mRNA_E-siliculosus-1a_M_contig98.17704.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig98.17704.1
Unique NamemRNA_E-siliculosus-1a_M_contig98.17704.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig98.17704.1 vs. uniprot
Match: A0A6H5JW80_9PHAE (Tr-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JW80_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 1.090e-6
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = -2 
Query:  493 LSACPLESGIPEDVEEGRLNPRDDAK 570
            LSACPLESGIPEDVEEGRLNPRDDAK
Sbjct:  627 LSACPLESGIPEDVEEGRLNPRDDAK 652
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig98.17704.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JW80_9PHAE1.090e-6100.00Tr-type G domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig98contigE-siliculosus-1a_M_contig98:256425..256995 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size432
Model size571
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig98.17704.1prot_E-siliculosus-1a_M_contig98.17704.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig98 256477..256908 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936556.6583989-UTR-E-siliculosus-1a_M_contig98:256424..2564761622936556.6583989-UTR-E-siliculosus-1a_M_contig98:256424..256476Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig98 256425..256476 +
1696251129.5275862-UTR-E-siliculosus-1a_M_contig98:256424..2564761696251129.5275862-UTR-E-siliculosus-1a_M_contig98:256424..256476Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig98 256425..256476 +
1622936556.7063212-UTR-E-siliculosus-1a_M_contig98:256908..2569951622936556.7063212-UTR-E-siliculosus-1a_M_contig98:256908..256995Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig98 256909..256995 +
1696251129.5616417-UTR-E-siliculosus-1a_M_contig98:256908..2569951696251129.5616417-UTR-E-siliculosus-1a_M_contig98:256908..256995Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig98 256909..256995 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936556.6779501-CDS-E-siliculosus-1a_M_contig98:256476..2569081622936556.6779501-CDS-E-siliculosus-1a_M_contig98:256476..256908Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig98 256477..256908 +
1696251129.5469785-CDS-E-siliculosus-1a_M_contig98:256476..2569081696251129.5469785-CDS-E-siliculosus-1a_M_contig98:256476..256908Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig98 256477..256908 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig98.17704.1

>prot_E-siliculosus-1a_M_contig98.17704.1 ID=prot_E-siliculosus-1a_M_contig98.17704.1|Name=mRNA_E-siliculosus-1a_M_contig98.17704.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=144bp
MWGTRQIWCWENRKGGTPHAGGRNTKCGGRDKFGAWTMSQGELRGNTQHT
LLRGADASRKAHCGVAGTGSARAEHYSSITSHYPWKTANNKTRIRIFEYY
RYMQSHKRVMLHTPSPLKLASSNTAEHKPTPYTKIQDRRDMYI*
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mRNA from alignment at E-siliculosus-1a_M_contig98:256425..256995+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig98.17704.1 ID=mRNA_E-siliculosus-1a_M_contig98.17704.1|Name=mRNA_E-siliculosus-1a_M_contig98.17704.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=571bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:256425..256995+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TCTGGGAGAATAGGAAGGGTGGCACGCCACACGCGGGAGGACGAAACACA
AAATGTGGGGGACGCGACAAATTTGGTGCTGGGAGAATAGGAAGGGTGGC
ACGCCACACGCGGGAGGACGAAACACAAAATGTGGGGGACGCGACAAATT
TGGTGCTTGGACAATGAGCCAGGGTGAACTAAGAGGTAACACACAACACA
CCTTGCTCCGCGGGGCTGACGCCAGTAGGAAGGCACATTGCGGTGTAGCT
GGAACAGGGAGCGCAAGAGCCGAACATTACTCTAGCATAACATCGCACTA
CCCCTGGAAGACGGCGAATAACAAGACACGTATCCGAATATTCGAATACT
ACCGATACATGCAGAGCCACAAACGCGTTATGCTTCACACGCCCTCTCCC
CTAAAACTGGCATCTTCTAATACCGCGGAACACAAACCTACTCCATATAC
AAAAATTCAAGATAGACGCGACATGTATATTTAATTGCACACCTTCGCGT
CGTCCCTGGGGTTAAGGCGGCCCTCCTCCACGTCTTCGGGGATGCCCGAC
TCCAGGGGGCACGCGGACAGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig98:256425..256995+

>mRNA_E-siliculosus-1a_M_contig98.17704.1 ID=mRNA_E-siliculosus-1a_M_contig98.17704.1|Name=mRNA_E-siliculosus-1a_M_contig98.17704.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=864bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:256425..256995+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTGGGGGACGCGACAAATTTGGTGCTGGGAGAATAGGAAGGGTGGCAC
GCCACACGCGGGAGGACGAAACACAAAATGTGGGGGACGCGACAAATTTG
GTGCTTGGACAATGAGCCAGGGTGAACTAAGAGGTAACACACAACACACC
TTGCTCCGCGGGGCTGACGCCAGTAGGAAGGCACATTGCGGTGTAGCTGG
AACAGGGAGCGCAAGAGCCGAACATTACTCTAGCATAACATCGCACTACC
CCTGGAAGACGGCGAATAACAAGACACGTATCCGAATATTCGAATACTAC
CGATACATGCAGAGCCACAAACGCGTTATGCTTCACACGCCCTCTCCCCT
AAAACTGGCATCTTCTAATACCGCGGAACACAAACCTACTCCATATACAA
AAATTCAAGATAGACGCGACATGTATATTTAAATGTGGGGGACGCGACAA
ATTTGGTGCTGGGAGAATAGGAAGGGTGGCACGCCACACGCGGGAGGACG
AAACACAAAATGTGGGGGACGCGACAAATTTGGTGCTTGGACAATGAGCC
AGGGTGAACTAAGAGGTAACACACAACACACCTTGCTCCGCGGGGCTGAC
GCCAGTAGGAAGGCACATTGCGGTGTAGCTGGAACAGGGAGCGCAAGAGC
CGAACATTACTCTAGCATAACATCGCACTACCCCTGGAAGACGGCGAATA
ACAAGACACGTATCCGAATATTCGAATACTACCGATACATGCAGAGCCAC
AAACGCGTTATGCTTCACACGCCCTCTCCCCTAAAACTGGCATCTTCTAA
TACCGCGGAACACAAACCTACTCCATATACAAAAATTCAAGATAGACGCG
ACATGTATATTTAA
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