Homology
BLAST of mRNA_E-siliculosus-1a_M_contig98.17704.1 vs. uniprot
Match: A0A6H5JW80_9PHAE (Tr-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JW80_9PHAE) HSP 1 Score: 58.5 bits (140), Expect = 1.090e-6 Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = -2 Query: 493 LSACPLESGIPEDVEEGRLNPRDDAK 570
LSACPLESGIPEDVEEGRLNPRDDAK
Sbjct: 627 LSACPLESGIPEDVEEGRLNPRDDAK 652
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 432 |
| Model size | 571 |
| Exons | 1 |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936556.6583989-UTR-E-siliculosus-1a_M_contig98:256424..256476 | 1622936556.6583989-UTR-E-siliculosus-1a_M_contig98:256424..256476 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig98 256425..256476 + |
| 1696251129.5275862-UTR-E-siliculosus-1a_M_contig98:256424..256476 | 1696251129.5275862-UTR-E-siliculosus-1a_M_contig98:256424..256476 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig98 256425..256476 + |
| 1622936556.7063212-UTR-E-siliculosus-1a_M_contig98:256908..256995 | 1622936556.7063212-UTR-E-siliculosus-1a_M_contig98:256908..256995 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig98 256909..256995 + |
| 1696251129.5616417-UTR-E-siliculosus-1a_M_contig98:256908..256995 | 1696251129.5616417-UTR-E-siliculosus-1a_M_contig98:256908..256995 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig98 256909..256995 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936556.6779501-CDS-E-siliculosus-1a_M_contig98:256476..256908 | 1622936556.6779501-CDS-E-siliculosus-1a_M_contig98:256476..256908 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig98 256477..256908 + |
| 1696251129.5469785-CDS-E-siliculosus-1a_M_contig98:256476..256908 | 1696251129.5469785-CDS-E-siliculosus-1a_M_contig98:256476..256908 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig98 256477..256908 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig98.17704.1 >prot_E-siliculosus-1a_M_contig98.17704.1 ID=prot_E-siliculosus-1a_M_contig98.17704.1|Name=mRNA_E-siliculosus-1a_M_contig98.17704.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=144bp
MWGTRQIWCWENRKGGTPHAGGRNTKCGGRDKFGAWTMSQGELRGNTQHT
LLRGADASRKAHCGVAGTGSARAEHYSSITSHYPWKTANNKTRIRIFEYY
RYMQSHKRVMLHTPSPLKLASSNTAEHKPTPYTKIQDRRDMYI* back to topmRNA from alignment at E-siliculosus-1a_M_contig98:256425..256995+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_M_contig98.17704.1 ID=mRNA_E-siliculosus-1a_M_contig98.17704.1|Name=mRNA_E-siliculosus-1a_M_contig98.17704.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=571bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:256425..256995+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TCTGGGAGAATAGGAAGGGTGGCACGCCACACGCGGGAGGACGAAACACA
AAATGTGGGGGACGCGACAAATTTGGTGCTGGGAGAATAGGAAGGGTGGC
ACGCCACACGCGGGAGGACGAAACACAAAATGTGGGGGACGCGACAAATT
TGGTGCTTGGACAATGAGCCAGGGTGAACTAAGAGGTAACACACAACACA
CCTTGCTCCGCGGGGCTGACGCCAGTAGGAAGGCACATTGCGGTGTAGCT
GGAACAGGGAGCGCAAGAGCCGAACATTACTCTAGCATAACATCGCACTA
CCCCTGGAAGACGGCGAATAACAAGACACGTATCCGAATATTCGAATACT
ACCGATACATGCAGAGCCACAAACGCGTTATGCTTCACACGCCCTCTCCC
CTAAAACTGGCATCTTCTAATACCGCGGAACACAAACCTACTCCATATAC
AAAAATTCAAGATAGACGCGACATGTATATTTAATTGCACACCTTCGCGT
CGTCCCTGGGGTTAAGGCGGCCCTCCTCCACGTCTTCGGGGATGCCCGAC
TCCAGGGGGCACGCGGACAGG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_M_contig98:256425..256995+ >mRNA_E-siliculosus-1a_M_contig98.17704.1 ID=mRNA_E-siliculosus-1a_M_contig98.17704.1|Name=mRNA_E-siliculosus-1a_M_contig98.17704.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=864bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:256425..256995+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTGGGGGACGCGACAAATTTGGTGCTGGGAGAATAGGAAGGGTGGCAC
GCCACACGCGGGAGGACGAAACACAAAATGTGGGGGACGCGACAAATTTG
GTGCTTGGACAATGAGCCAGGGTGAACTAAGAGGTAACACACAACACACC
TTGCTCCGCGGGGCTGACGCCAGTAGGAAGGCACATTGCGGTGTAGCTGG
AACAGGGAGCGCAAGAGCCGAACATTACTCTAGCATAACATCGCACTACC
CCTGGAAGACGGCGAATAACAAGACACGTATCCGAATATTCGAATACTAC
CGATACATGCAGAGCCACAAACGCGTTATGCTTCACACGCCCTCTCCCCT
AAAACTGGCATCTTCTAATACCGCGGAACACAAACCTACTCCATATACAA
AAATTCAAGATAGACGCGACATGTATATTTAAATGTGGGGGACGCGACAA
ATTTGGTGCTGGGAGAATAGGAAGGGTGGCACGCCACACGCGGGAGGACG
AAACACAAAATGTGGGGGACGCGACAAATTTGGTGCTTGGACAATGAGCC
AGGGTGAACTAAGAGGTAACACACAACACACCTTGCTCCGCGGGGCTGAC
GCCAGTAGGAAGGCACATTGCGGTGTAGCTGGAACAGGGAGCGCAAGAGC
CGAACATTACTCTAGCATAACATCGCACTACCCCTGGAAGACGGCGAATA
ACAAGACACGTATCCGAATATTCGAATACTACCGATACATGCAGAGCCAC
AAACGCGTTATGCTTCACACGCCCTCTCCCCTAAAACTGGCATCTTCTAA
TACCGCGGAACACAAACCTACTCCATATACAAAAATTCAAGATAGACGCG
ACATGTATATTTAA back to top
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