mRNA_E-siliculosus-1a_M_contig98.17691.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig98.17691.1
Unique NamemRNA_E-siliculosus-1a_M_contig98.17691.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig98.17691.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig98contigE-siliculosus-1a_M_contig98:98397..99056 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size516
Model size660
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig98.17691.1prot_E-siliculosus-1a_M_contig98.17691.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig98 98540..99055 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936556.5142207-UTR-E-siliculosus-1a_M_contig98:98396..985391622936556.5142207-UTR-E-siliculosus-1a_M_contig98:98396..98539Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig98 98397..98539 +
1696251129.4614031-UTR-E-siliculosus-1a_M_contig98:98396..985391696251129.4614031-UTR-E-siliculosus-1a_M_contig98:98396..98539Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig98 98397..98539 +
1622936556.547297-UTR-E-siliculosus-1a_M_contig98:99055..990561622936556.547297-UTR-E-siliculosus-1a_M_contig98:99055..99056Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig98 99056..99056 +
1696251129.4843557-UTR-E-siliculosus-1a_M_contig98:99055..990561696251129.4843557-UTR-E-siliculosus-1a_M_contig98:99055..99056Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig98 99056..99056 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936556.5300944-CDS-E-siliculosus-1a_M_contig98:98539..990551622936556.5300944-CDS-E-siliculosus-1a_M_contig98:98539..99055Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig98 98540..99055 +
1696251129.469775-CDS-E-siliculosus-1a_M_contig98:98539..990551696251129.469775-CDS-E-siliculosus-1a_M_contig98:98539..99055Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig98 98540..99055 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig98.17691.1

>prot_E-siliculosus-1a_M_contig98.17691.1 ID=prot_E-siliculosus-1a_M_contig98.17691.1|Name=mRNA_E-siliculosus-1a_M_contig98.17691.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=172bp
MHTPRTPINEFLQALWHNSPPPLPAPTPIKNFCTQNDYARPRPACPHVLS
MAATPPVLLVPLPLVANTQPDSTKAAMILKPYTHARLCVMFYYYSARCWR
SRPRWSSGAESTRTLSRYPPIVRGSRPIAQVALDDSTAASKWPPRITLAR
AKHQEYRDATSKKAPRQWISW*
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mRNA from alignment at E-siliculosus-1a_M_contig98:98397..99056+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig98.17691.1 ID=mRNA_E-siliculosus-1a_M_contig98.17691.1|Name=mRNA_E-siliculosus-1a_M_contig98.17691.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=660bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:98397..99056+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CGTGATGATTGTTTCGTTCAATTTATCTTTTCAACTTTTATTGGTCTCGT
TAAGACAACCTGCCACTCACTCAACAACAGGAGGTATGTAGCGAAACACA
CTCGGCAACAAACACACAGCAGCAGCAGAGTGCTACGCAACTTATGCATA
CTCCCCGTACACCCATAAACGAATTTCTGCAAGCACTATGGCATAATTCC
CCCCCACCGCTCCCCGCACCTACACCCATAAAGAATTTCTGTACGCAAAA
CGACTATGCCCGCCCCCGTCCCGCATGCCCCCATGTTCTATCCATGGCAG
CCACGCCGCCCGTGCTCCTCGTCCCCCTCCCCCTAGTGGCTAACACACAA
CCAGATTCGACCAAAGCAGCAATGATCTTAAAACCATACACACACGCTCG
TCTGTGCGTCATGTTCTACTACTACAGTGCTCGTTGTTGGCGCTCTCGTC
CCAGGTGGAGCAGCGGCGCAGAAAGCACGCGCACGCTCTCCAGATACCCC
CCCATCGTGCGCGGTAGTAGACCCATAGCCCAAGTCGCGCTCGACGATAG
TACCGCTGCCTCAAAATGGCCCCCTAGAATAACTCTCGCGCGCGCGAAAC
ACCAAGAGTACCGCGACGCAACGAGTAAAAAGGCCCCTCGTCAATGGATT
TCCTGGTAGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig98:98397..99056+

>mRNA_E-siliculosus-1a_M_contig98.17691.1 ID=mRNA_E-siliculosus-1a_M_contig98.17691.1|Name=mRNA_E-siliculosus-1a_M_contig98.17691.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1032bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:98397..99056+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCATACTCCCCGTACACCCATAAACGAATTTCTGCAAGCACTATGGCA
TAATTCCCCCCCACCGCTCCCCGCACCTACACCCATAAAGAATTTCTGTA
CGCAAAACGACTATGCCCGCCCCCGTCCCGCATGCCCCCATGTTCTATCC
ATGGCAGCCACGCCGCCCGTGCTCCTCGTCCCCCTCCCCCTAGTGGCTAA
CACACAACCAGATTCGACCAAAGCAGCAATGATCTTAAAACCATACACAC
ACGCTCGTCTGTGCGTCATGTTCTACTACTACAGTGCTCGTTGTTGGCGC
TCTCGTCCCAGGTGGAGCAGCGGCGCAGAAAGCACGCGCACGCTCTCCAG
ATACCCCCCCATCGTGCGCGGTAGTAGACCCATAGCCCAAGTCGCGCTCG
ACGATAGTACCGCTGCCTCAAAATGGCCCCCTAGAATAACTCTCGCGCGC
GCGAAACACCAAGAGTACCGCGACGCAACGAGTAAAAAGGCCCCTCGTCA
ATGGATTTCCTGGTAGATGCATACTCCCCGTACACCCATAAACGAATTTC
TGCAAGCACTATGGCATAATTCCCCCCCACCGCTCCCCGCACCTACACCC
ATAAAGAATTTCTGTACGCAAAACGACTATGCCCGCCCCCGTCCCGCATG
CCCCCATGTTCTATCCATGGCAGCCACGCCGCCCGTGCTCCTCGTCCCCC
TCCCCCTAGTGGCTAACACACAACCAGATTCGACCAAAGCAGCAATGATC
TTAAAACCATACACACACGCTCGTCTGTGCGTCATGTTCTACTACTACAG
TGCTCGTTGTTGGCGCTCTCGTCCCAGGTGGAGCAGCGGCGCAGAAAGCA
CGCGCACGCTCTCCAGATACCCCCCCATCGTGCGCGGTAGTAGACCCATA
GCCCAAGTCGCGCTCGACGATAGTACCGCTGCCTCAAAATGGCCCCCTAG
AATAACTCTCGCGCGCGCGAAACACCAAGAGTACCGCGACGCAACGAGTA
AAAAGGCCCCTCGTCAATGGATTTCCTGGTAG
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