mRNA_E-siliculosus-1a_F_contig105.358.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig105.358.1 vs. uniprot
Match: D8LSE7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSE7_ECTSI) HSP 1 Score: 481 bits (1237), Expect = 4.220e-153 Identity = 555/621 (89.37%), Postives = 559/621 (90.02%), Query Frame = 1
Query: 829 RLGTRLNRPRSGGRGRHGXXXXXXXXXXXXXNAPNGGRKERAVKSTPEGASWRDSDLDGKSRSFLFVKEIKAIPKWNGERVMNVLKEAQRLSEAS-----GDGGGAADTRRGLEMTSFMYNACISHMSSCGRWQQALEILELMRAADFPPDEFCVTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAGDGTRYEIDRVSXXXXXXXXXXXXXXXXXXXXXXXMTHPXXXXXXXXXXXXXXXXXXRGEV----RVSADMISYNTIIDVCKKCGPWEEAVKLLREMSTPGNGRGXXXXXXXXXXXXVIIPNVVTYTSAIVACGRSGHWDEALELFREMKAVGIQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGLDVLRTTMXXXXXXXXXXXXXXXXXXXXVSKEWGKVRGVVEEMAVERGLSPNAACLTDLVVVGVKTGQWEDLLETLEKLEKGGILPKDPEIGQAAVTAARACGKDQAEQLRLAEILTRTRHQN 2664
RLGTRLNRPRSGGRGRHGXXXXXXXXXX NAPNGGRKERAVKSTPEGASWRDSDLDGKSRSFLFVKEIKAIPKWNGERVMNVLKEAQRLSEA+ GDGGGAAD RRGLEMTSFMYNACISHMSSCGRWQQALEILELMRAADFPPDEFCVTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAGDGTRYEIDRVSXXXXXXXXXXXXXXXXXXXXXXXMTHPXXXXXXXXXXXXXXXXXX RV+ADMI+YNTIIDVCKKCGPWEEAVKLLREMSTPGNG G VIIPNV VGIQ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGLDVLRTTMXXXXXXXXXXXXXXXXXXXXVSKEWGKVRGVVEEMAVERGLSPNAACLTDLVVVGVKTGQWEDLLETLEKLE+GGILPKDPEIGQAAVTAAR CGKDQAEQLRLAEI TRTRHQN
Sbjct: 50 RLGTRLNRPRSGGRGRHGXXXXXXXXXXS--NAPNGGRKERAVKSTPEGASWRDSDLDGKSRSFLFVKEIKAIPKWNGERVMNVLKEAQRLSEAAAAAAPGDGGGAADARRGLEMTSFMYNACISHMSSCGRWQQALEILELMRAADFPPDEFCVTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAGDGTRYEIDRVSXXXXXXXXXXXXXXXXXXXXXXXMTHPXXXXXXXXXXXXXXXXXXXXXXXXXGRVTADMIAYNTIIDVCKKCGPWEEAVKLLREMSTPGNGGGGSGSGG------VIIPNVXXXXXXXXXXXXXXXXXXXXXXXXXXXTVGIQPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGLDVLRTTMXXXXXXXXXXXXXXXXXXXXVSKEWGKVRGVVEEMAVERGLSPNAACLTDLVVVGVKTGQWEDLLETLEKLEEGGILPKDPEIGQAAVTAARTCGKDQAEQLRLAEIFTRTRHQN 662
BLAST of mRNA_E-siliculosus-1a_F_contig105.358.1 vs. uniprot
Match: I2CQP9_NANGC (PPR_long domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=I2CQP9_NANGC) HSP 1 Score: 59.7 bits (143), Expect = 3.680e-5 Identity = 34/98 (34.69%), Postives = 48/98 (48.98%), Query Frame = 1
Query: 1858 VSADMISYNTIIDVCKKCGPWEEAVKLLREMSTPGNGRGXXXXXXXXXXXX-------------VIIPNVVTYTSAIVACGRSGHWDEALELFREMKA 2112
+ ++ISYNT I+ C K G +EEA+ +LR M P + V P++VTY SAI ACG +G W+ AL L E++A
Sbjct: 377 IRPNIISYNTAIEACAKRGRFEEALAILRSMQVPDTEKAGGHVPLPSASKKRNGASHHRRHQRLVPEPDLVTYHSAIKACGHAGQWEHALSLLAEVRA 474 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig105.358.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig105.358.1 >prot_E-siliculosus-1a_F_contig105.358.1 ID=prot_E-siliculosus-1a_F_contig105.358.1|Name=mRNA_E-siliculosus-1a_F_contig105.358.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=780bp MALISSLGTAAAASTAASAAASAAVTAVTIPPHTRDCRIASSLGVRANPTback to top mRNA from alignment at E-siliculosus-1a_F_contig105:59090..68406- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig105.358.1 ID=mRNA_E-siliculosus-1a_F_contig105.358.1|Name=mRNA_E-siliculosus-1a_F_contig105.358.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=9317bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig105:59090..68406- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig105:59090..68406- >mRNA_E-siliculosus-1a_F_contig105.358.1 ID=mRNA_E-siliculosus-1a_F_contig105.358.1|Name=mRNA_E-siliculosus-1a_F_contig105.358.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=4680bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig105:59090..68406- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |