mRNA_E-siliculosus-1a_M_contig97.17674.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig97.17674.1
Unique NamemRNA_E-siliculosus-1a_M_contig97.17674.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig97.17674.1 vs. uniprot
Match: D7FZ90_ECTSI (Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ90_ECTSI)

HSP 1 Score: 301 bits (771), Expect = 1.060e-90
Identity = 190/209 (90.91%), Postives = 194/209 (92.82%), Query Frame = 1 
Query:    1 MVNLHDLASKGDLEGVRKFLARSAAKINKTDKAGQTPLHLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQVLCEAGASTSAGLQTSDGRSPLHIAANKGFVECAEVLLQHGAPIDTSRNKWGNLPEEDCVVSEIRTLIAAARQERDAAGPVAGAAGSSPYNPYAASAPPPMEEWKEGVGFPPGYSSPQAPPSYHE 627
            MVNLHDLASKGDLEGVRKFLARSAAKIN TDKAGQTPLH+AA         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AQVLCEAGASTSAGLQTSDGRSPLHIAANKGFVECAEVLLQHGAPIDTSRN+WGNLPEEDCVVSEIRTLIAAARQERDAAGPVAG AGSSPYNPYAASAPPPMEE KEGVGFPPG SSPQAPPS+ +
Sbjct:    1 MVNLHDLASKGDLEGVRKFLARSAAKINNTDKAGQTPLHIAAKGGHVEVCRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAQVLCEAGASTSAGLQTSDGRSPLHIAANKGFVECAEVLLQHGAPIDTSRNRWGNLPEEDCVVSEIRTLIAAARQERDAAGPVAGVAGSSPYNPYAASAPPPMEERKEGVGFPPGCSSPQAPPSFEK 209
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig97.17674.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZ90_ECTSI1.060e-9090.91Chain A, 4ank: A Designed Ankyrin Repeat Protein W... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig97contigE-siliculosus-1a_M_contig97:550919..553535 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size672
Model size672
Exons5
Hectar predicted targeting categoryother localisation
BRITEko00000,ko01000
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.G
EC2.4.2.30
EggNOG OGsCOG0666@1,KOG4177@2759
EggNOG free text desc.response to abiotic stimulus
KEGG koko:K15261
Seed eggNOG ortholog2880.D7FZ90
Seed ortholog evalue8e-80
Seed ortholog score303.5
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig97.17674.1prot_E-siliculosus-1a_M_contig97.17674.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig97 550919..553535 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936554.3395634-CDS-E-siliculosus-1a_M_contig97:550918..5510491622936554.3395634-CDS-E-siliculosus-1a_M_contig97:550918..551049Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig97 550919..551049 +
1696251128.4097245-CDS-E-siliculosus-1a_M_contig97:550918..5510491696251128.4097245-CDS-E-siliculosus-1a_M_contig97:550918..551049Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig97 550919..551049 +
1622936554.3602004-CDS-E-siliculosus-1a_M_contig97:551539..5517091622936554.3602004-CDS-E-siliculosus-1a_M_contig97:551539..551709Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig97 551540..551709 +
1696251128.430589-CDS-E-siliculosus-1a_M_contig97:551539..5517091696251128.430589-CDS-E-siliculosus-1a_M_contig97:551539..551709Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig97 551540..551709 +
1622936554.3772185-CDS-E-siliculosus-1a_M_contig97:552217..5523171622936554.3772185-CDS-E-siliculosus-1a_M_contig97:552217..552317Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig97 552218..552317 +
1696251128.4479516-CDS-E-siliculosus-1a_M_contig97:552217..5523171696251128.4479516-CDS-E-siliculosus-1a_M_contig97:552217..552317Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig97 552218..552317 +
1622936554.39388-CDS-E-siliculosus-1a_M_contig97:552894..5531121622936554.39388-CDS-E-siliculosus-1a_M_contig97:552894..553112Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig97 552895..553112 +
1696251128.458799-CDS-E-siliculosus-1a_M_contig97:552894..5531121696251128.458799-CDS-E-siliculosus-1a_M_contig97:552894..553112Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig97 552895..553112 +
1622936554.4129343-CDS-E-siliculosus-1a_M_contig97:553482..5535351622936554.4129343-CDS-E-siliculosus-1a_M_contig97:553482..553535Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig97 553483..553535 +
1696251128.4694126-CDS-E-siliculosus-1a_M_contig97:553482..5535351696251128.4694126-CDS-E-siliculosus-1a_M_contig97:553482..553535Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig97 553483..553535 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig97.17674.1

>prot_E-siliculosus-1a_M_contig97.17674.1 ID=prot_E-siliculosus-1a_M_contig97.17674.1|Name=mRNA_E-siliculosus-1a_M_contig97.17674.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=224bp
MVNLHDLASKGDLEGVRKFLARSAAKINKTDKAGQTPLHLAAKGGHVEVC
RELLASVASVDIEDTKHTTPLQLAVENNRAKVAQVLCEAGASTSAGLQTS
DGRSPLHIAANKGFVECAEVLLQHGAPIDTSRNKWGNLPEEDCVVSEIRT
LIAAARQERDAAGPVAGAAGSSPYNPYAASAPPPMEEWKEGVGFPPGYSS
PQAPPSYHESVSPSQSTGVEGNM*
back to top

mRNA from alignment at E-siliculosus-1a_M_contig97:550919..553535+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig97.17674.1 ID=mRNA_E-siliculosus-1a_M_contig97.17674.1|Name=mRNA_E-siliculosus-1a_M_contig97.17674.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=2617bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig97:550919..553535+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGTCAACTTGCATGATCTGGCCAGTAAGGGAGACTTGGAGGGAGTCCG
CAAGTTCCTGGCACGTTCAGCCGCGAAAATAAACAAAACGGACAAGGCAG
GACAAACGCCTCTCCATCTTGCAGCAAAAGGGTGAGCTCAAATATTCACG
TGCTGCTGATATGCTGATATACGCAGAAGGTGTATCTGACGCCTTAACAG
AGTATTCCTCAATGTCATACTTGACCCCACAGTTGTCAACTGCCACTTTT
ATGTCACCGTACGCCCTCAATTGCCGCTCTCGTCAGAACCAACGGAAAGG
CGTTCGACCCACGGTTACCTAGGACAATTCCTTGCGGCACGTGCCTTAAT
TTGCCAACGTGGCAAGGGTTCATCTGTTCTCTCGCTCGAATAGCGCACGG
AACTCTCTACTGAGTTCGATACACCGCTTGAATTCTTCGATAACCCATTC
TTTGAAGGCATTTCCTGACTAAAAACAAAAGTCGGCAGCCTAGGACCCTT
CCTTGAAGTTCGACCATGTCTGTTCGTCGAAGCCGCTTATTACCTCAAAA
GGCTTCTTTCTCCCTACAATTGATCGCACGTCGGCAACAAACTACACTTG
GTGTACGAACCCCTATCTCAGGGGTCATGTTGAGGTCTGCAGGGAACTAC
TTGCGTCCGTCGCGAGCGTGGACATCGAGGACACCAAGCACACCACACCT
CTACAGCTCGCGGTAGAGAACAACAGAGCCAAGGTGGCGCAAGTTTTATG
CGAAGCAGGTGCATCGACCAGCGCCGGCCTGCAAACTTCAGGTACGTTTG
GAGCAGTTGCTTCCTCGGGAAGTTGTCGGTCTGCGCTCTGGCGTGGGATA
GAACGACAGATCCACGTGCGTGCTGTTGCTCACCGGTGCATGGTAACGTG
GAAGACATAAAGCGTAGACCACTTTTGGGCATATGAGGCCAAGGCGTGAA
AAATCATCCTGTGGAATTTGACCGTTCCCGCGCATCTCGTTCATTCCTGC
CTCGAAACGAATTCTCTCCATGAATCATGAACTCTCGTTGGACTAGTCTA
GACAAAGCTTTCGCCGGGTATGCACGGTTATAACCCTAACCCGACCTCCG
ATCGCAGCCGTTCTTGAGCATCCTTGCTTGCTCACACAACCCTGACGCTA
ACTCCAGCCTTGGCCGCGACCCGGAGACTCAGCGACCTTGTGACACCAAG
ACACCAAATTGGTTAATAGGTGCACGCTTGATGTAGCTGTCCTGTCTCCG
AAAACGATTGCACATACACGCCCCCGGCGTGCCTCCCGTTTCTCACCAGA
CGGTCGGTCCCCACTGCACATCGCGGCGAACAAAGGATTCGTCGAGTGTG
CAGAAGTCCTGCTGCAGCATGGTGCACCGATTGACACGAGCCGTAACAAG
TGAGTGGGCGTTGTTCTGTGAGGATGCTGTCGGCCAGACCTTTTCTCACA
CGTTAGTTACTGGGTAACCTCCGCAGGTGCACAGACAGACAAGTCTGCAC
TATCTGGATGAGTATGGTAGATAGATTCGGCGTACAGTTCTTGTCTTCCG
CCGGCTCGTGGTACACGACATCGGATTACACCACGTCGTAAGCACCAAGC
TGAACTTGCCCTGTTCTCTCACCCCTGCACCGGACACGTAGCCTCACCCC
CTTCCCCGCCCCCCACCGACATCCAATGCCACACTCGGTGACATGTTACC
CACTAAAGCTCAGAATGTACGAACATAGCCCCATGCGAAACAATATTCAC
GATAAACGCGTGTACACTACACCGCTTTCTCTGCGTACAATCTATATGTA
CGTATGTAGAAGTCCATTAGGCTAGTCAGCGCTGACTAAGGGTTTGATTT
CGGCTTCAATACAATCGCACTTGCATCAAGCACCACCGACAACGCTGGGA
AATCGTGATGCTCCATTCGGAAAAAAATATGCATCTACCGTTGATGACGA
CGGGATCGTTTTCGGCCGGGCGCCAGGTGGGGTAACCTCCCCGAGGAGGA
CTGCGTGGTGTCCGAAATACGTACCCTGATCGCGGCGGCGCGCCAAGAGC
GCGATGCCGCCGGTCCCGTTGCCGGTGCTGCTGGCAGCTCTCCGTACAAC
CCGTACGCGGCGTCGGCGCCACCGCCGATGGAAGAGTGGAAGGAGGGAGT
CGGCTTTCCTCCGGGTTATTCTTCGCCACAGGCTCCGCCGTCGTGTGAGT
GTGGATCTTCACAAGGGGGGGCACCACCGGTGGTGGAACTAACAACGTGT
TTTTTTGGTTGGATCAGTAGCGGTGTCTCTCCGGACAACAGAGGTTGGTG
TTGTTCGTGTGGACCAGCCAGAACTCGTTTTTTTCGTTCTCAGCCGATGG
TATGACCGTTGCGCTCGCCATGCAGCGAGCGTCGTTTCGGTATTGCTTGG
TAGAGAAACTACAAGAAGAGGATGCATGCATAAGAATACAACTAAGTATG
AATTACTGCTTCATGAAGGGACGTCACATTTTTCAGTTCTTAAGCGATAC
GATCTCCACGCGCTCGACCGTTTTCCCGCTGGATGAATTTTGAACGCGCG
TGCCGGGTAAATAGACCACGAGTCTGTCAGCCCTAGCCAGAGCACAGGCG
TGGAGGGAAATATGTAG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig97:550919..553535+

>mRNA_E-siliculosus-1a_M_contig97.17674.1 ID=mRNA_E-siliculosus-1a_M_contig97.17674.1|Name=mRNA_E-siliculosus-1a_M_contig97.17674.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1344bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig97:550919..553535+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGTCAACTTGCATGATCTGGCCAGTAAGGGAGACTTGGAGGGAGTCCG
CAAGTTCCTGGCACGTTCAGCCGCGAAAATAAACAAAACGGACAAGGCAG
GACAAACGCCTCTCCATCTTGCAGCAAAAGGATGGTCAACTTGCATGATC
TGGCCAGTAAGGGAGACTTGGAGGGAGTCCGCAAGTTCCTGGCACGTTCA
GCCGCGAAAATAAACAAAACGGACAAGGCAGGACAAACGCCTCTCCATCT
TGCAGCAAAAGGGGGTCATGTTGAGGTCTGCAGGGAACTACTTGCGTCCG
TCGCGAGCGTGGACATCGAGGACACCAAGCACACCACACCTCTACAGCTC
GCGGTAGAGAACAACAGAGCCAAGGTGGCGCAAGTTTTATGCGAAGCAGG
TGCATCGACCAGCGCCGGCCTGCAAACTTCAGGGGTCATGTTGAGGTCTG
CAGGGAACTACTTGCGTCCGTCGCGAGCGTGGACATCGAGGACACCAAGC
ACACCACACCTCTACAGCTCGCGGTAGAGAACAACAGAGCCAAGGTGGCG
CAAGTTTTATGCGAAGCAGGTGCATCGACCAGCGCCGGCCTGCAAACTTC
AGACGGTCGGTCCCCACTGCACATCGCGGCGAACAAAGGATTCGTCGAGT
GTGCAGAAGTCCTGCTGCAGCATGGTGCACCGATTGACACGAGCCGTAAC
AAACGGTCGGTCCCCACTGCACATCGCGGCGAACAAAGGATTCGTCGAGT
GTGCAGAAGTCCTGCTGCAGCATGGTGCACCGATTGACACGAGCCGTAAC
AAGTGGGGTAACCTCCCCGAGGAGGACTGCGTGGTGTCCGAAATACGTAC
CCTGATCGCGGCGGCGCGCCAAGAGCGCGATGCCGCCGGTCCCGTTGCCG
GTGCTGCTGGCAGCTCTCCGTACAACCCGTACGCGGCGTCGGCGCCACCG
CCGATGGAAGAGTGGAAGGAGGGAGTCGGCTTTCCTCCGGGTTATTCTTC
GCCACAGGCTCCGCCGTCGTGTGGGGTAACCTCCCCGAGGAGGACTGCGT
GGTGTCCGAAATACGTACCCTGATCGCGGCGGCGCGCCAAGAGCGCGATG
CCGCCGGTCCCGTTGCCGGTGCTGCTGGCAGCTCTCCGTACAACCCGTAC
GCGGCGTCGGCGCCACCGCCGATGGAAGAGTGGAAGGAGGGAGTCGGCTT
TCCTCCGGGTTATTCTTCGCCACAGGCTCCGCCGTCGTACCACGAGTCTG
TCAGCCCTAGCCAGAGCACAGGCGTGGAGGGAAATATGTAGACCACGAGT
CTGTCAGCCCTAGCCAGAGCACAGGCGTGGAGGGAAATATGTAG
back to top