mRNA_E-siliculosus-1a_M_contig97.17659.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig97.17659.1 vs. uniprot
Match: D7FTQ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTQ4_ECTSI) HSP 1 Score: 885 bits (2288), Expect = 5.960e-309 Identity = 470/630 (74.60%), Postives = 494/630 (78.41%), Query Frame = 1 Query: 73 MWRWFTYEEEYPAEESKHDPNHELVRQTSNNNSGGRLSAQAPHGGSSSNSDTDSDSDVAPTFDKLDPSVTAAILAQAAFRGYRLRERLRRLPAREAERHILGLHNNARGFRRVGLFLLFSGLYLALVFYGVDVSFQRSVQQALRDHVAGVKYGPDLDKTHHDVASLADVHQWVQAFYLKTYDGTQLEHPCTPCAIKPPDDVCDACDFTSVYEMFAEDSDSSSADSVGSEGEPSSGEAVAVAWNGRRKMSAASGYSSXXXXXSTMGLSEECVQCLIATNCVGVFLEKCEEVLGLPSSNTTASSSTAMSDAAAANFSALLAELDLEPSGGVRASGGYVTIENIDYDGNGYVGDRNRVIGGMLVTFTRRNRLSSDECSSSSSGDYYDICLADEGTNKTTYTPPQPWGSFRIDEQMVYSGVASGYPVLLDAGGFNTGLNFGYCTLLVMEDLGVIPRDEVRSVNVQLVTYNGNQGSAFGSINIGFTFDHGGEVEANELVTAYILTGNAGQGSDRIRWILGLIFVCMTLAMIRHDTRKWYRARRAKARRNKCHCVCGFTFFTLIILNVLMWLGWASLGQVIAFDVVVQNTG-EESSVLDALVGQVLALQEAALFSWALHIIFLLTTLAGLYRWIFQ 1959
MWRWFTYEEEYP EESKHDPN+ L RQTS+ S GRLSA++PHG SN TDSDSDVAPTFD LDPSVTAAILAQAAFRGYRLRERLRRLPAREAE+HILGLHNNARGFRRVGLFLLFSGLY LVFYGVDV+FQRSVQQALRDHVAGVKYGPDLDKTHHDVASL DVH W+Q IA NC+GVFLEKCEEVLGLPSSNTTASSSTA S+A AANFSALL ELDLEPSGGVRASGGYVT+EN++YDGNGY GDRNR IGGMLVTFTRRNRLSSDECSSSSSGDYYDICLADEGTNKTTY+PPQPW SFR E+MVYSGVASGYPVL++ GGFN GLNFGYCTLLVMEDL VIPRDEVRSVNVQLVTYNGNQGSAFGSINIGFTFDHGGEVEA+ELVTAYILTGNAGQG+DRIRWILGLIFVCMTLAMIRHDT+KWYRAR AKARRNKCHC CGFTFFTLIILNVLMWLGWASLG+VIAFDVV+Q T EE SV+ AL GQ+LALQEAALFSW+LHIIFLLTTLAGLYRWIFQ
Sbjct: 1 MWRWFTYEEEYPGEESKHDPNNVLARQTSS--SSGRLSAKSPHG---SNGGTDSDSDVAPTFDNLDPSVTAAILAQAAFRGYRLRERLRRLPAREAEKHILGLHNNARGFRRVGLFLLFSGLYFTLVFYGVDVAFQRSVQQALRDHVAGVKYGPDLDKTHHDVASLGDVHDWIQ----------------------------------------------------------------------------------------------------IALNCIGVFLEKCEEVLGLPSSNTTASSSTATSEAVAANFSALLEELDLEPSGGVRASGGYVTVENVNYDGNGYAGDRNRAIGGMLVTFTRRNRLSSDECSSSSSGDYYDICLADEGTNKTTYSPPQPWASFRQSEEMVYSGVASGYPVLIETGGFNIGLNFGYCTLLVMEDLDVIPRDEVRSVNVQLVTYNGNQGSAFGSINIGFTFDHGGEVEAHELVTAYILTGNAGQGNDRIRWILGLIFVCMTLAMIRHDTKKWYRARHAKARRNKCHCCCGFTFFTLIILNVLMWLGWASLGKVIAFDVVLQGTSSEEDSVMAALTGQILALQEAALFSWSLHIIFLLTTLAGLYRWIFQ 525
BLAST of mRNA_E-siliculosus-1a_M_contig97.17659.1 vs. uniprot
Match: D7FTQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTQ5_ECTSI) HSP 1 Score: 560 bits (1444), Expect = 1.030e-184 Identity = 297/362 (82.04%), Postives = 317/362 (87.57%), Query Frame = 1 Query: 73 MWRWFTYEEEYPAEESKHDPNHELVRQTSNNNSGGRLSAQAPHGGSSSNSDTDSDSDVAPTFDKLDPSVTAAILAQAAFRGYRLRERLRRLPAREAERHILGLHNNARGFRRVGLFLLFSGLYLALVFYGVDVSFQRSVQQALRDHVAGVKYGPDLDKTHHDVASLADVHQWVQAFYLKTYDGTQLEHPCTPCAIKPPDDVCDACDFTSVYEMFAEDSDSSSADSVGSEGEPSSGEAVAVAWNGRRKMSAASGYSSXXXXX--STMGLSEECVQCLIATNCVGVFLEKCEEVLGLPSSNTTASSSTAMSDAAAANFSALLAELDLEPSGGVRASGGYVTIENIDYDGNGYVGDRNRVIGGML 1152
MWRWFTYEEEYP EESKHDPN+ L QTS+N+ GRLSAQAPHG SSSNS DSDSDVAPTFDKLDPSVTAAILAQAAFRGYRLRERLRRLPAREAE+HILGL+NNARGFRRVGLFLLFSGLY ALVFYGVDVSFQRSVQQALRDHVAGVKYGPDLDKTHHDVASLADVHQWVQAF+LKTYDGTQLEHPCTPCAIKPPDDVCDACDFT +YEMFA DSDSS+AD+VGS+GEPS G+ VA AWNGRRK++ XXXXX ++ G+SEECVQCLIA NCVG L+ C+EVLGLP SNTTA ANFS LL ELDLEPSGGVRASGGYVT+EN+DY GNGYVGDRNR IGGML
Sbjct: 1 MWRWFTYEEEYPGEESKHDPNNVLALQTSSNS--GRLSAQAPHGDSSSNSGIDSDSDVAPTFDKLDPSVTAAILAQAAFRGYRLRERLRRLPAREAEKHILGLYNNARGFRRVGLFLLFSGLYFALVFYGVDVSFQRSVQQALRDHVAGVKYGPDLDKTHHDVASLADVHQWVQAFFLKTYDGTQLEHPCTPCAIKPPDDVCDACDFTPLYEMFANDSDSSAADNVGSQGEPSPGDGVAAAWNGRRKVAXXXXXXXXXXXXXSTSFGISEECVQCLIALNCVGDLLQNCQEVLGLPYSNTTAXXXXXXXXXXXANFSTLLEELDLEPSGGVRASGGYVTVENVDYSGNGYVGDRNRAIGGML 360
BLAST of mRNA_E-siliculosus-1a_M_contig97.17659.1 vs. uniprot
Match: A0A6H5L574_9PHAE (PKD_channel domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L574_9PHAE) HSP 1 Score: 534 bits (1376), Expect = 2.820e-176 Identity = 282/305 (92.46%), Postives = 287/305 (94.10%), Query Frame = 1 Query: 2011 MLTFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAFAALTWLLVGSSTKEFSTLEDAWRSVIRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAIFLEAYRGVVSGMRGEDTILQSFIAFVGMSWCSLKTRIRWATACIRWRLGGRRNTSPQDRPRRPSLKMFLQGSTGVCGVDGRPVVMVRRPPESSTVLGRQLSFNCPRYITVTEMQALIEATPVPARVADRLVRKIVHDWVFRSDERITGGVFQSPSSSGEYGNGTGGRNGGVTVPSTRRSSSTDSSRPMLRRWSSSTASR 2925
MLTFHKRMSIVTDTLSRASTHL+HFLFVFFLVILAFAALTWLLVGSSTKEFSTLEDAWRSVIRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAI LEAYRGV SGM GEDTI QSFIAFVGMSWCSL TRIRWATACIRWRLGGRRNTS RPSLK+FLQGSTGVCGVDGRPVVMVRRPPESST+LGRQLSFNCPRYITVTEMQALIEATPVPARVADRLVRKIVHDWVFRSDERITGG FQSPSSSGEYGNGTGG NGGVT + RR+SSTDSSRPM RR SSSTASR
Sbjct: 1 MLTFHKRMSIVTDTLSRASTHLNHFLFVFFLVILAFAALTWLLVGSSTKEFSTLEDAWRSVIRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAILLEAYRGVASGMHGEDTIFQSFIAFVGMSWCSLTTRIRWATACIRWRLGGRRNTS------RPSLKIFLQGSTGVCGVDGRPVVMVRRPPESSTILGRQLSFNCPRYITVTEMQALIEATPVPARVADRLVRKIVHDWVFRSDERITGGSFQSPSSSGEYGNGTGGGNGGVTATNLRRTSSTDSSRPMQRRPSSSTASR 299
BLAST of mRNA_E-siliculosus-1a_M_contig97.17659.1 vs. uniprot
Match: A0A6H5L8A4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8A4_9PHAE) HSP 1 Score: 359 bits (922), Expect = 5.660e-111 Identity = 191/226 (84.51%), Postives = 203/226 (89.82%), Query Frame = 1 Query: 226 TDSDSDVAPTFDKLDPSVTAAILAQAAFRGYRLRERLRRLPAREAERHILGLHNNARGFRRVGLFLLFSGLYLALVFYGVDVSFQRSVQQALRDHVAGVKYGPDLDKTHHDVASLADVHQWVQAFYLKTYDGTQLEHPCTPCAIKPPDDVCDACDFTSVYEMFAEDSDSSSADSVGSEGEPSSGEAVAVAWNGRRKMSAASGYSSXXXXXS-TMGLSEECVQCLIA 900
T+SDSDVAPT+DKLDPSVTAAILAQAAFRGYRLRERLRRLPAREAE+ ILGLH+NARGFRRVGLFLLFSGLY ALVFYGVDV+FQRSVQQALRDHVAGVKYGPDLDKTHHDVASLADVHQWVQAF+LKTYDGTQLEHPCTPCAIKPPDDVCDACDFT + EMFA DSDSS+AD VGS+G+ SSGEAVA AWN XXXXX TMGLSEECVQCL++
Sbjct: 7 TESDSDVAPTYDKLDPSVTAAILAQAAFRGYRLRERLRRLPAREAEKQILGLHSNARGFRRVGLFLLFSGLYFALVFYGVDVAFQRSVQQALRDHVAGVKYGPDLDKTHHDVASLADVHQWVQAFFLKTYDGTQLEHPCTPCAIKPPDDVCDACDFTPLIEMFANDSDSSAADDVGSKGKSSSGEAVAAAWNAXXXXXXXXXXXXXXXXXXXTMGLSEECVQCLVS 232
BLAST of mRNA_E-siliculosus-1a_M_contig97.17659.1 vs. uniprot
Match: A0A6H5KUB6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUB6_9PHAE) HSP 1 Score: 306 bits (785), Expect = 7.310e-93 Identity = 159/174 (91.38%), Postives = 162/174 (93.10%), Query Frame = 1 Query: 73 MWRWFTYEEEYPAEESKHDPNHELVRQTSNNNSGGRLSAQAPHGGSSSNSDTDSDSDVAPTFDKLDPSVTAAILAQAAFRGYRLRERLRRLPAREAERHILGLHNNARGFRRVGLFLLFSGLYLALVFYGVDVSFQRSVQQALRDHVAGVKYGPDLDKTHHDVASLADVHQWVQ 594
MWRWFTYEEEYP EESKHDPNH LVRQTS + +GGRLSAQAPHGGSSSN DVAPTFDKLDPSVTAAILAQAAFRGYRLRERLRRLPAREAE+HILGLHNNARGFRRVGLFLLFSGLY ALVFYGVDVSFQRSVQQALRDHVAGVKYGPDLDKTHHDVASLADVHQWVQ
Sbjct: 1 MWRWFTYEEEYPGEESKHDPNHVLVRQTSTS-TGGRLSAQAPHGGSSSNXXXXXXXDVAPTFDKLDPSVTAAILAQAAFRGYRLRERLRRLPAREAEKHILGLHNNARGFRRVGLFLLFSGLYFALVFYGVDVSFQRSVQQALRDHVAGVKYGPDLDKTHHDVASLADVHQWVQ 173
BLAST of mRNA_E-siliculosus-1a_M_contig97.17659.1 vs. uniprot
Match: A0A6H5JES1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JES1_9PHAE) HSP 1 Score: 285 bits (729), Expect = 1.380e-84 Identity = 160/226 (70.80%), Postives = 172/226 (76.11%), Query Frame = 1 Query: 2311 NVVIAIFL-EAYRGVVSGMRGEDTILQSFIAFVGMSW--------------------CSLKTRIRWATACIRWRLGGRRNTSPQDRPRRPSLKMFLQGSTGVCGVDGRPVVMVRRPPESSTVLGRQLSFNCPRYITVTEMQALIEATPVPARVADRLVRKIVHDWVFRSDERITGGVFQSPSSSGEYGNGTGGRNGGVTVPSTRRSSSTDSSRPMLRRWSSSTASR 2925
++ +A+F+ +AYRGVVSGMRGEDTIL SFIAFVGMSW C LKT IRWATA IRWRL GRRNT PQD PRRPSL+MFLQGSTGVCGVDGRPVVMVR PESST+LGRQL ALIEA PVPARVA RLVRKIVH+WVFRSDERITGGV QSPSSSGEYG+GTGG NGGVTV STRR+ TDSSRPMLRRWSS + SR
Sbjct: 4 SLALAVFVVKAYRGVVSGMRGEDTILPSFIAFVGMSWWVLHSRQTARQPEQILTSVSCVLKTGIRWATAYIRWRLAGRRNTPPQDGPRRPSLRMFLQGSTGVCGVDGRPVVMVRGLPESSTILGRQLPA------------ALIEAFPVPARVAGRLVRKIVHEWVFRSDERITGGVSQSPSSSGEYGSGTGGGNGGVTVLSTRRTYCTDSSRPMLRRWSSFSPSR 217
BLAST of mRNA_E-siliculosus-1a_M_contig97.17659.1 vs. uniprot
Match: D7FTQ7_ECTSI (Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTQ7_ECTSI) HSP 1 Score: 245 bits (625), Expect = 1.580e-71 Identity = 130/136 (95.59%), Postives = 131/136 (96.32%), Query Frame = 1 Query: 2011 MLTFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAFAALTWLLVGSSTKEFSTLEDAWRSVIRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAIFLEAYRGVVSGMRGEDTILQSFIAFVGMSW 2418
MLTFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAFAALTWLLVGSSTKEFSTL +AW SV RISLGESENFYPQILDAQPTVGPV VVLYQVLGVVLLLNVVIAIFLEAYRGVVSGMRGEDTI QSFIAFVGMSW
Sbjct: 1 MLTFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAFAALTWLLVGSSTKEFSTLVEAWGSVTRISLGESENFYPQILDAQPTVGPVAVVLYQVLGVVLLLNVVIAIFLEAYRGVVSGMRGEDTIFQSFIAFVGMSW 136
BLAST of mRNA_E-siliculosus-1a_M_contig97.17659.1 vs. uniprot
Match: D7FTQ6_ECTSI (Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTQ6_ECTSI) HSP 1 Score: 214 bits (545), Expect = 1.840e-60 Identity = 130/195 (66.67%), Postives = 134/195 (68.72%), Query Frame = 1 Query: 1762 MWLGWASLGQVIAFDVVVQNTG-EESSVLDALVGQVLALQEAALFSWALHIIFLLTTLAGLYRWIFQARDRSKNTTKEKLCSEGMLTFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAFAALTWLLVGSSTKEFSTLEDAWRSVIRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAIFLEAY 2343
MWLGWASLG+VIA DVV+Q T EE SVLDA MLTFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAFAALTWLLVGSSTKEFSTLEDAW+SV RISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAI LE +
Sbjct: 1 MWLGWASLGKVIANDVVLQGTSSEEDSVLDA-----------------------------------------------------MLTFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAFAALTWLLVGSSTKEFSTLEDAWQSVTRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAILLETF 142
BLAST of mRNA_E-siliculosus-1a_M_contig97.17659.1 vs. uniprot
Match: A0A6H5JIW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIW8_9PHAE) HSP 1 Score: 178 bits (452), Expect = 6.040e-48 Identity = 110/177 (62.15%), Postives = 119/177 (67.23%), Query Frame = 1 Query: 1798 AFDVVVQNTGEES-SVLDALVGQVLALQEAALFSWALHIIFLLTTLAGLYRWIFQARDRSKNTTKEKLCSEGMLTFHKRMSIVTDTLSRASTHLDHFLFVFFL--------------------------VILAFAALTWLLVGSSTKEFSTLEDAWRSVIRISLGESENFYPQILDA 2247
AFDVV+Q+T E+ SVL AL G +LALQEA LFSW+L+IIFLLTTLAGLY WIFQ M TFHKRMSIV DTLSRASTHL FLFVFFL V+LAFAALT+LLVGSSTKE STLEDAWRSVIRIS GES+N YPQILDA
Sbjct: 2 AFDVVLQDTSSEADSVLGALTGPILALQEAELFSWSLYIIFLLTTLAGLYPWIFQ-----------------MFTFHKRMSIVPDTLSRASTHLTQFLFVFFLERLTQLPDKRCLGVLVLVVVLTTPMVVVLAFAALTFLLVGSSTKEISTLEDAWRSVIRISPGESDNLYPQILDA 161
BLAST of mRNA_E-siliculosus-1a_M_contig97.17659.1 vs. uniprot
Match: A0A6H5JJW1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJW1_9PHAE) HSP 1 Score: 179 bits (453), Expect = 6.320e-48 Identity = 106/165 (64.24%), Postives = 116/165 (70.30%), Query Frame = 1 Query: 73 MWRWFTYEEEYPAEESKHDPNHELVRQTSNNNSGGRLSAQAPHGGSSSNSDTDSDSDVAPTFDKLDPSVTAAI------------LAQAAFRGYRLRERLRRLPAREAERHILGLHNNARGFRRVGLFLLFSGLYLALVFYGVDVSFQRSVQQALRDHVAGVKYG 531
MWRWFTYEEEYP ESKHD NH + RQ S++ S GRLSA++PH GS N T+ DSDVAPT D +T + AAFRGY LRERLRRLPARE E+HILGLHNNA GFRRVGLFLLFSGLY LVFY V+FQ SVQQALRDHVA V G
Sbjct: 1 MWRWFTYEEEYPGAESKHDSNHVVARQPSSS-SRGRLSAKSPHSGS--NDGTEGDSDVAPTLDTWIHLLTGGMGDYVRQSSGGPAALVAAFRGYHLRERLRRLPAREVEKHILGLHNNASGFRRVGLFLLFSGLYFTLVFY---VAFQPSVQQALRDHVAAVSLG 159 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig97.17659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 13 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig97.17659.1 >prot_E-siliculosus-1a_M_contig97.17659.1 ID=prot_E-siliculosus-1a_M_contig97.17659.1|Name=mRNA_E-siliculosus-1a_M_contig97.17659.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=952bp MWRWFTYEEEYPAEESKHDPNHELVRQTSNNNSGGRLSAQAPHGGSSSNSback to top mRNA from alignment at E-siliculosus-1a_M_contig97:355728..374280- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig97.17659.1 ID=mRNA_E-siliculosus-1a_M_contig97.17659.1|Name=mRNA_E-siliculosus-1a_M_contig97.17659.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=18553bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig97:355728..374280- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig97:355728..374280- >mRNA_E-siliculosus-1a_M_contig97.17659.1 ID=mRNA_E-siliculosus-1a_M_contig97.17659.1|Name=mRNA_E-siliculosus-1a_M_contig97.17659.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=5712bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig97:355728..374280- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |