mRNA_E-siliculosus-1a_M_contig97.17658.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig97.17658.1 vs. uniprot
Match: D7FTQ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTQ4_ECTSI) HSP 1 Score: 882 bits (2279), Expect = 6.280e-308 Identity = 463/631 (73.38%), Postives = 486/631 (77.02%), Query Frame = 1 Query: 91 MWRWFTYEEEHPGEESKHDPNNVL-RQTSSSSGRLSAQAPQGGSSSNSGTDSDSDVAPTFDKLDPSVTAAILAQAAFRGYRLRERLRRLPAREAEKHILGLHNNARGFRRVGLFLLFSGLYLALVFYGVDVAFQRSVQQALRDHVAGVKYGPDLDKTHHDVASLADVHEWVQAFFLKTYDGTQLEHPCTPCAIKPPDDVCDACDFTPLYEMFANDSDSSAADAVGSEREPNSGEAVAAAWNGRRKVXXXXXXXXXXXXXXXXXTFGLSEECVQCLIALNCVGDLLQNCQEVLGLPYSNTTAXXXXXXXXXXXXTFSTLLEELDLEPSGGVRASAGYLTVENVDYSGNGYVGDRNRAIGGMLVTFTRRNRLSSDKCSSSSSGDYYDICLADEGTNKTTYTPPQPWGFFRPEEEMIYSGVASGYPVLLDTGGLNIGLNFGYCTLLVMEDLDVIPRDEVRSVNVQLVTYNGNQGSAFGSINIGFTFDHGGEVEAHELVTAYILTGNAGQGNDRIRWILGLIFVCMTLAMIRHDTKKWYRARRAKARRNKCHCCCGFTFFTLIILNVLMWVGWASLGQVITSDVVLEGTSTEDDLVLGALIGQVLALQEAALFSWALHIIFLLTTLAGLYRWIFQ 1980
MWRWFTYEEE+PGEESKHDPNNVL RQTSSSSGRLSA++P G SN GTDSDSDVAPTFD LDPSVTAAILAQAAFRGYRLRERLRRLPAREAEKHILGLHNNARGFRRVGLFLLFSGLY LVFYGVDVAFQRSVQQALRDHVAGVKYGPDLDKTHHDVASL DVH+W+Q IALNC+G L+ C+EVLGLP SNTTA FS LLEELDLEPSGGVRAS GY+TVENV+Y GNGY GDRNRAIGGMLVTFTRRNRLSSD+CSSSSSGDYYDICLADEGTNKTTY+PPQPW FR EEM+YSGVASGYPVL++TGG NIGLNFGYCTLLVMEDLDVIPRDEVRSVNVQLVTYNGNQGSAFGSINIGFTFDHGGEVEAHELVTAYILTGNAGQGNDRIRWILGLIFVCMTLAMIRHDTKKWYRAR AKARRNKCHCCCGFTFFTLIILNVLMW+GWASLG+VI DVVL+GTS+E+D V+ AL GQ+LALQEAALFSW+LHIIFLLTTLAGLYRWIFQ
Sbjct: 1 MWRWFTYEEEYPGEESKHDPNNVLARQTSSSSGRLSAKSPHG---SNGGTDSDSDVAPTFDNLDPSVTAAILAQAAFRGYRLRERLRRLPAREAEKHILGLHNNARGFRRVGLFLLFSGLYFTLVFYGVDVAFQRSVQQALRDHVAGVKYGPDLDKTHHDVASLGDVHDWIQ-------------------------------------------------------------------------------------------------------IALNCIGVFLEKCEEVLGLPSSNTTASSSTATSEAVAANFSALLEELDLEPSGGVRASGGYVTVENVNYDGNGYAGDRNRAIGGMLVTFTRRNRLSSDECSSSSSGDYYDICLADEGTNKTTYSPPQPWASFRQSEEMVYSGVASGYPVLIETGGFNIGLNFGYCTLLVMEDLDVIPRDEVRSVNVQLVTYNGNQGSAFGSINIGFTFDHGGEVEAHELVTAYILTGNAGQGNDRIRWILGLIFVCMTLAMIRHDTKKWYRARHAKARRNKCHCCCGFTFFTLIILNVLMWLGWASLGKVIAFDVVLQGTSSEEDSVMAALTGQILALQEAALFSWSLHIIFLLTTLAGLYRWIFQ 525
BLAST of mRNA_E-siliculosus-1a_M_contig97.17658.1 vs. uniprot
Match: D7FTQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTQ5_ECTSI) HSP 1 Score: 599 bits (1544), Expect = 8.380e-200 Identity = 333/361 (92.24%), Postives = 344/361 (95.29%), Query Frame = 1 Query: 91 MWRWFTYEEEHPGEESKHDPNNVLR-QTSSSSGRLSAQAPQGGSSSNSGTDSDSDVAPTFDKLDPSVTAAILAQAAFRGYRLRERLRRLPAREAEKHILGLHNNARGFRRVGLFLLFSGLYLALVFYGVDVAFQRSVQQALRDHVAGVKYGPDLDKTHHDVASLADVHEWVQAFFLKTYDGTQLEHPCTPCAIKPPDDVCDACDFTPLYEMFANDSDSSAADAVGSEREPNSGEAVAAAWNGRRKVXXXXXXXXXXXXXXXXXTFGLSEECVQCLIALNCVGDLLQNCQEVLGLPYSNTTAXXXXXXXXXXXXTFSTLLEELDLEPSGGVRASAGYLTVENVDYSGNGYVGDRNRAIGGML 1170
MWRWFTYEEE+PGEESKHDPNNVL QTSS+SGRLSAQAP G SSSNSG DSDSDVAPTFDKLDPSVTAAILAQAAFRGYRLRERLRRLPAREAEKHILGL+NNARGFRRVGLFLLFSGLY ALVFYGVDV+FQRSVQQALRDHVAGVKYGPDLDKTHHDVASLADVH+WVQAFFLKTYDGTQLEHPCTPCAIKPPDDVCDACDFTPLYEMFANDSDSSAAD VGS+ EP+ G+ VAAAWNGRRKV XXXXXXXXXXXXX +FG+SEECVQCLIALNCVGDLLQNCQEVLGLPYSNTTAXXXXXXXXXXX FSTLLEELDLEPSGGVRAS GY+TVENVDYSGNGYVGDRNRAIGGML
Sbjct: 1 MWRWFTYEEEYPGEESKHDPNNVLALQTSSNSGRLSAQAPHGDSSSNSGIDSDSDVAPTFDKLDPSVTAAILAQAAFRGYRLRERLRRLPAREAEKHILGLYNNARGFRRVGLFLLFSGLYFALVFYGVDVSFQRSVQQALRDHVAGVKYGPDLDKTHHDVASLADVHQWVQAFFLKTYDGTQLEHPCTPCAIKPPDDVCDACDFTPLYEMFANDSDSSAADNVGSQGEPSPGDGVAAAWNGRRKVAXXXXXXXXXXXXXST-SFGISEECVQCLIALNCVGDLLQNCQEVLGLPYSNTTAXXXXXXXXXXXANFSTLLEELDLEPSGGVRASGGYVTVENVDYSGNGYVGDRNRAIGGML 360
BLAST of mRNA_E-siliculosus-1a_M_contig97.17658.1 vs. uniprot
Match: A0A6H5L574_9PHAE (PKD_channel domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L574_9PHAE) HSP 1 Score: 533 bits (1373), Expect = 4.540e-176 Identity = 281/304 (92.43%), Postives = 286/304 (94.08%), Query Frame = 1 Query: 2020 MLTFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAFAALTWLLVGSSTKEFSTLEDAWQSVTRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAILLEAYRGVVSGMHGEDTILQSFIAFVGMSWCSSKTRIRWATACIRWRLGGRRNTSPQDRVRRPSLKMFLQGSTGVCGVDGRPVVMVRRPPESSTVLGRQLSFNCPRYITVTEMQALIEATPVPARVADRLVRKIVHDWVFRSDERITGGVVQSPSSSGEYGNGIGGGNGSVTATHPRRTSSTDSSRPMLRRWSSSTAS 2931
MLTFHKRMSIVTDTLSRASTHL+HFLFVFFLVILAFAALTWLLVGSSTKEFSTLEDAW+SV RISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAILLEAYRGV SGMHGEDTI QSFIAFVGMSWCS TRIRWATACIRWRLGGRRNTS RPSLK+FLQGSTGVCGVDGRPVVMVRRPPESST+LGRQLSFNCPRYITVTEMQALIEATPVPARVADRLVRKIVHDWVFRSDERITGG QSPSSSGEYGNG GGGNG VTAT+ RRTSSTDSSRPM RR SSSTAS
Sbjct: 1 MLTFHKRMSIVTDTLSRASTHLNHFLFVFFLVILAFAALTWLLVGSSTKEFSTLEDAWRSVIRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAILLEAYRGVASGMHGEDTIFQSFIAFVGMSWCSLTTRIRWATACIRWRLGGRRNTS------RPSLKIFLQGSTGVCGVDGRPVVMVRRPPESSTILGRQLSFNCPRYITVTEMQALIEATPVPARVADRLVRKIVHDWVFRSDERITGGSFQSPSSSGEYGNGTGGGNGGVTATNLRRTSSTDSSRPMQRRPSSSTAS 298
BLAST of mRNA_E-siliculosus-1a_M_contig97.17658.1 vs. uniprot
Match: A0A6H5L8A4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8A4_9PHAE) HSP 1 Score: 370 bits (950), Expect = 4.350e-115 Identity = 206/229 (89.96%), Postives = 215/229 (93.89%), Query Frame = 1 Query: 232 GTDSDSDVAPTFDKLDPSVTAAILAQAAFRGYRLRERLRRLPAREAEKHILGLHNNARGFRRVGLFLLFSGLYLALVFYGVDVAFQRSVQQALRDHVAGVKYGPDLDKTHHDVASLADVHEWVQAFFLKTYDGTQLEHPCTPCAIKPPDDVCDACDFTPLYEMFANDSDSSAADAVGSEREPNSGEAVAAAWNGRRKVXXXXXXXXXXXXXXXXXTFGLSEECVQCLIA 918
GT+SDSDVAPT+DKLDPSVTAAILAQAAFRGYRLRERLRRLPAREAEK ILGLH+NARGFRRVGLFLLFSGLY ALVFYGVDVAFQRSVQQALRDHVAGVKYGPDLDKTHHDVASLADVH+WVQAFFLKTYDGTQLEHPCTPCAIKPPDDVCDACDFTPL EMFANDSDSSAAD VGS+ + +SGEAVAAAWN XXXXXXXXXXXXXXX T GLSEECVQCL++
Sbjct: 6 GTESDSDVAPTYDKLDPSVTAAILAQAAFRGYRLRERLRRLPAREAEKQILGLHSNARGFRRVGLFLLFSGLYFALVFYGVDVAFQRSVQQALRDHVAGVKYGPDLDKTHHDVASLADVHQWVQAFFLKTYDGTQLEHPCTPCAIKPPDDVCDACDFTPLIEMFANDSDSSAADDVGSKGKSSSGEAVAAAWNAXXXXXXXXXXXXXXXXXXX--TMGLSEECVQCLVS 232
BLAST of mRNA_E-siliculosus-1a_M_contig97.17658.1 vs. uniprot
Match: A0A6H5KUB6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUB6_9PHAE) HSP 1 Score: 300 bits (767), Expect = 1.980e-90 Identity = 156/173 (90.17%), Postives = 162/173 (93.64%), Query Frame = 1 Query: 91 MWRWFTYEEEHPGEESKHDPNNVL-RQTSSSSG-RLSAQAPQGGSSSNSGTDSDSDVAPTFDKLDPSVTAAILAQAAFRGYRLRERLRRLPAREAEKHILGLHNNARGFRRVGLFLLFSGLYLALVFYGVDVAFQRSVQQALRDHVAGVKYGPDLDKTHHDVASLADVHEWVQ 603
MWRWFTYEEE+PGEESKHDPN+VL RQTS+S+G RLSAQAP GGSSSN DVAPTFDKLDPSVTAAILAQAAFRGYRLRERLRRLPAREAEKHILGLHNNARGFRRVGLFLLFSGLY ALVFYGVDV+FQRSVQQALRDHVAGVKYGPDLDKTHHDVASLADVH+WVQ
Sbjct: 1 MWRWFTYEEEYPGEESKHDPNHVLVRQTSTSTGGRLSAQAPHGGSSSNXXXXXXXDVAPTFDKLDPSVTAAILAQAAFRGYRLRERLRRLPAREAEKHILGLHNNARGFRRVGLFLLFSGLYFALVFYGVDVSFQRSVQQALRDHVAGVKYGPDLDKTHHDVASLADVHQWVQ 173
BLAST of mRNA_E-siliculosus-1a_M_contig97.17658.1 vs. uniprot
Match: A0A6H5JES1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JES1_9PHAE) HSP 1 Score: 273 bits (699), Expect = 1.620e-80 Identity = 151/216 (69.91%), Postives = 157/216 (72.69%), Query Frame = 1 Query: 2344 EAYRGVVSGMHGEDTILQSFIAFVGMSW--------------------CSSKTRIRWATACIRWRLGGRRNTSPQDRVRRPSLKMFLQGSTGVCGVDGRPVVMVRRPPESSTVLGRQLSFNCPRYITVTEMQALIEATPVPARVADRLVRKIVHDWVFRSDERITGGVVQSPSSSGEYGNGIGGGNGSVTATHPRRTSSTDSSRPMLRRWSSSTAS 2931
+AYRGVVSGM GEDTIL SFIAFVGMSW C KT IRWATA IRWRL GRRNT PQD RRPSL+MFLQGSTGVCGVDGRPVVMVR PESST+LGRQL ALIEA PVPARVA RLVRKIVH+WVFRSDERITGGV QSPSSSGEYG+G GGGNG VT RRT TDSSRPMLRRWSS + S
Sbjct: 13 KAYRGVVSGMRGEDTILPSFIAFVGMSWWVLHSRQTARQPEQILTSVSCVLKTGIRWATAYIRWRLAGRRNTPPQDGPRRPSLRMFLQGSTGVCGVDGRPVVMVRGLPESSTILGRQLPA------------ALIEAFPVPARVAGRLVRKIVHEWVFRSDERITGGVSQSPSSSGEYGSGTGGGNGGVTVLSTRRTYCTDSSRPMLRRWSSFSPS 216
BLAST of mRNA_E-siliculosus-1a_M_contig97.17658.1 vs. uniprot
Match: D7FTQ7_ECTSI (Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTQ7_ECTSI) HSP 1 Score: 241 bits (614), Expect = 4.670e-70 Identity = 129/136 (94.85%), Postives = 130/136 (95.59%), Query Frame = 1 Query: 2020 MLTFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAFAALTWLLVGSSTKEFSTLEDAWQSVTRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAILLEAYRGVVSGMHGEDTILQSFIAFVGMSW 2427
MLTFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAFAALTWLLVGSSTKEFSTL +AW SVTRISLGESENFYPQILDAQPTVGPV VVLYQVLGVVLLLNVVIAI LEAYRGVVSGM GEDTI QSFIAFVGMSW
Sbjct: 1 MLTFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAFAALTWLLVGSSTKEFSTLVEAWGSVTRISLGESENFYPQILDAQPTVGPVAVVLYQVLGVVLLLNVVIAIFLEAYRGVVSGMRGEDTIFQSFIAFVGMSW 136
BLAST of mRNA_E-siliculosus-1a_M_contig97.17658.1 vs. uniprot
Match: D7FTQ6_ECTSI (Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTQ6_ECTSI) HSP 1 Score: 224 bits (570), Expect = 7.730e-64 Identity = 131/191 (68.59%), Postives = 138/191 (72.25%), Query Frame = 1 Query: 1780 MWVGWASLGQVITSDVVLEGTSTEDDLVLGALIGQVLALQEAALFSWALHIIFLLTTLAGLYRWIFQARDRSKNTMKKEFMLTFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAFAALTWLLVGSSTKEFSTLEDAWQSVTRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAILLEAY 2352
MW+GWASLG+VI +DVVL+GTS+E+D VL A MLTFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAFAALTWLLVGSSTKEFSTLEDAWQSVTRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAILLE +
Sbjct: 1 MWLGWASLGKVIANDVVLQGTSSEEDSVLDA-------------------------------------------------MLTFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAFAALTWLLVGSSTKEFSTLEDAWQSVTRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAILLETF 142
BLAST of mRNA_E-siliculosus-1a_M_contig97.17658.1 vs. uniprot
Match: A0A6H5JJW1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJW1_9PHAE) HSP 1 Score: 182 bits (463), Expect = 2.800e-49 Identity = 110/164 (67.07%), Postives = 118/164 (71.95%), Query Frame = 1 Query: 91 MWRWFTYEEEHPGEESKHDPNNVL-RQTSSSS-GRLSAQAPQGGSSSNSGTDSDSDVAPTFDKLDPSVTAAI------------LAQAAFRGYRLRERLRRLPAREAEKHILGLHNNARGFRRVGLFLLFSGLYLALVFYGVDVAFQRSVQQALRDHVAGVKYG 540
MWRWFTYEEE+PG ESKHD N+V+ RQ SSSS GRLSA++P GS N GT+ DSDVAPT D +T + AAFRGY LRERLRRLPARE EKHILGLHNNA GFRRVGLFLLFSGLY LVFY VAFQ SVQQALRDHVA V G
Sbjct: 1 MWRWFTYEEEYPGAESKHDSNHVVARQPSSSSRGRLSAKSPHSGS--NDGTEGDSDVAPTLDTWIHLLTGGMGDYVRQSSGGPAALVAAFRGYHLRERLRRLPAREVEKHILGLHNNASGFRRVGLFLLFSGLYFTLVFY---VAFQPSVQQALRDHVAAVSLG 159
BLAST of mRNA_E-siliculosus-1a_M_contig97.17658.1 vs. uniprot
Match: A0A6H5JIW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIW8_9PHAE) HSP 1 Score: 177 bits (450), Expect = 1.100e-47 Identity = 108/171 (63.16%), Postives = 117/171 (68.42%), Query Frame = 1 Query: 1822 DVVLEGTSTEDDLVLGALIGQVLALQEAALFSWALHIIFLLTTLAGLYRWIFQARDRSKNTMKKEFMLTFHKRMSIVTDTLSRASTHLDHFLFVFFL--------------------------VILAFAALTWLLVGSSTKEFSTLEDAWQSVTRISLGESENFYPQILDA 2256
DVVL+ TS+E D VLGAL G +LALQEA LFSW+L+IIFLLTTLAGLY WIFQ M TFHKRMSIV DTLSRASTHL FLFVFFL V+LAFAALT+LLVGSSTKE STLEDAW+SV RIS GES+N YPQILDA
Sbjct: 4 DVVLQDTSSEADSVLGALTGPILALQEAELFSWSLYIIFLLTTLAGLYPWIFQ-------------MFTFHKRMSIVPDTLSRASTHLTQFLFVFFLERLTQLPDKRCLGVLVLVVVLTTPMVVVLAFAALTFLLVGSSTKEISTLEDAWRSVIRISPGESDNLYPQILDA 161 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig97.17658.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 15 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig97.17658.1 >prot_E-siliculosus-1a_M_contig97.17658.1 ID=prot_E-siliculosus-1a_M_contig97.17658.1|Name=mRNA_E-siliculosus-1a_M_contig97.17658.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=948bp MWRWFTYEEEHPGEESKHDPNNVLRQTSSSSGRLSAQAPQGGSSSNSGTDback to top mRNA from alignment at E-siliculosus-1a_M_contig97:334845..353654+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig97.17658.1 ID=mRNA_E-siliculosus-1a_M_contig97.17658.1|Name=mRNA_E-siliculosus-1a_M_contig97.17658.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=18810bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig97:334845..353654+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig97:334845..353654+ >mRNA_E-siliculosus-1a_M_contig97.17658.1 ID=mRNA_E-siliculosus-1a_M_contig97.17658.1|Name=mRNA_E-siliculosus-1a_M_contig97.17658.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=5688bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig97:334845..353654+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |