mRNA_E-siliculosus-1a_M_contig97.17650.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig97.17650.1 vs. uniprot
Match: A0A6H5KHC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHC8_9PHAE) HSP 1 Score: 2553 bits (6616), Expect = 0.000e+0 Identity = 1337/1602 (83.46%), Postives = 1387/1602 (86.58%), Query Frame = 1 Query: 25 MLDKAPSLSPPTDHPQRSKSLLPPSIVELNSDNVVLSWRAALGRCSIHAENPDNISESQEWANLDEDTRKHQHDADGSAKKSGDVKTFDVDHVELQTCCGCPRCLHEGDENDQKNEDGGSLEGRACSCRCCSSARCGRGCWRPVYQGPHNQCRVQLVQGNKMHFFRLLVRARLPPPSMRNYMRPKNGLVSGSDPETSGGVMQPNDGGSPNLSSPNRRRQRRQNEYSGIPTVTCSDSEEETLLSGSPALAHGGSRSTAGGGDDHACDRSPDRGQQRGGVGVSLSTQRGDESRATIAAGKNVWFVSDSVFVDSRPPAVTLHGIGTALVLTWPALAGLSGGEQVSYILEQWSQATTTPTPSLNRTSPRADQGAPSELDGRPKSRRGHHRNYNHRRHLAPPKQVDLKEAFAVGTRCWFMPTGLKTGMRYWYRLSLIHEGGKGVGGKWVSYSTSVAPPRCVGMTSRALVLSLPRALDDAARSGSEGESQDRRISPDRQHHADHNNNNDELLLTPRDENRLSVDNDAEHLEAPEMDGQRLGTRSLPTGSAGDKTEKHGDAEDVGVTTNRHPNGGEEKIEQPMVWYTLEGFLVEEKRWVALYRGPSPEVVVE-------------------------------------------GLEPSTLVGFRLGIDVDITELRHRSLGPLASLELEPTSPDAVGVAATAVAPVAAAAPTTCGENQCPKWTQLSQTYPPPTRPVVVRPALRLKSAADAK---KSMGHGASNPKTDLGRNRWQWSPATSPAASKMRREGFAFHDATATVGGGFYLERPLLSWGRLQCHSGGAMWECCAIGAGAGEGGQCREYSACVEFATAPLAPRYAAFVVGESPQVKLWWAEPKPDLRSSTAPSALVRPSSAPPFATPARHRGRHRLAPPEEALDSSPGRQSTAVAVGERSGVSPYAQQHPLFTVILLEPGTDGEHTPIRRRAYSGPRQWLGLGRYPEFFSASGAGVFAELAPSTAFAVGLCTKATDSQPASEVQAVVVTAPPAPVMEPIAVANDSAAAEAEGEVFGAVSLKATWRTDIDQRYLPAGIDLPPLSIALEMAHIPEAGLSAHGVGETAAKVSQNGQQTSSPRTAALTSATATVDGRVVSPTSLNTARPSSGTQDIPVRTDAGFGQSWTLGSSSWGRSRSREEDFEIVWRGEEGGAGTEKGVVEAQSPPLPPGMRFLFRVRVECRFGVAVSASTVYETALVVPLSPKGLRACLTTHESRAGNLSRCVRLLWDAFHPGHGKNVVTSFTVQARRPRPSSPEDQVTRDANHPHPPPTPAHPWQDVCSCPEIGCLDPATLGVPHVLADYRVRAEGPGGKGPWCEPLRVDLLVQEDTPRNGLCLPPGXXXXXXXXXXXXXXXXXXXXXXVTFAAAKQEKRHSGRQPMDFVRPGARARDPLTGEARRRLWANQRPLKVPPPPAAVATLVLPGAVVTARVRTTAVAEHRCRLAGGSNQLLWGALASPRAARGCRVEETLSSRAAPGAAEICGFNRAVSAGDDPENSLGPKTQGEPVGPRSRARGGRGERLAVAAMPHELASLLREELDVSCRLGCYEAGPWESEGRGGAVDRLYQRGPETPVVAW 4692
MLDKAPS+SPP DHPQR+KSLLPPSIVELNSDNVVLSWRAA+GRCSI ENPDNIS SQEWANLDEDTRKHQHDADG K+ G VK FDVDHVELQTCCGCPRCLHEGDEN Q+NEDG ++GRACSC CCSSARCGRGCWRPVYQGPHN CRVQLVQGN+MHFFRLLVRARLPPP+MRN+MRPKNG+VSGSDP+TSGGVMQPNDGGSP+LS P+RRRQRR+NEYS IPTV+C D E TLLS SPALA GGSRSTAGGGD HAC RS R QQRGGVGVSLST GDESRAT AAGKNVWFVSDSVFVDSRPPAVTLHGIGTALVLTWPALAGL+GGEQVSYILEQWSQAT T TPS+NRTSPR DQG P+ELDGR KS RGH R++NHRRHLAPPKQVDLKEAFAVGTRCWFMPTGLKTGMRYWYRLSLIHEGGKGVGG WVSYSTSV PPRC+GMTSRALVLSLPRALDD ARSGSEGESQDRR SPDRQHHADHNN +DE L TPRDENRLSVDNDAEHLEA EMDGQRLGTR+LPTGSAGDKTEKHG+AEDVGVTTN+HPNGGEEKIEQPMVWYTLEGF VEEKRWVALYRGPSPEVVVE GLEPS LV FRLGIDVDITELRHRSLGPLASLELEPTSPD G AATAVAPVAAAAPTTCGE+ CPK TQ SQT P P R VVRPALRLKSAA+A + +GHGASNPKTDLGRNRWQWSPATSPAASKMRREGFAFHDA+ATVGGGFYLERPLLSWGRLQCHSGGAMWECCAIGAGAGEGGQCREYSACVEFATAPLAPRYAAFVVGESPQVKLWWAEPKPDL SSTAPSA VRPSSAPPFATPAR RG HRLA EA +S PGRQS +VAVG+RS VSPYAQQHPLFTV LLEP TDG+H P+RRR YSGP+QWLGLGRYPEF SASGAGVFAELAPSTAFAVGLCT ATDSQP SEVQAVVVTAPPAPVMEPIAVAN+SAAAEAEGEVFGAV+LKATWRTDIDQRYLPAGIDLPPLSIALEMAH+ EAGLSA GVG+TAAK +QNGQ SSPRTAAL ATATV VSPTS NT RPSSGT+DIPVRTDAGFGQSWTLGSSSWGR RS E+FEIVWRGEEGGAG EKGVVEAQ PPLPPGMRFLFRVRVEC FGVAVSASTVYETA V PLSPKGLRACLTTHESRAGN+SRCVRL WDAFHPGHG NVVTSFTVQARR RPSSPEDQVTRDANHPHPPPTPAHPWQDV SCPEIGCLDPATLGVPHVLADYRVRAEGPGGKGPWCEPLRVDLLVQEDTPRNGLCL GXXXXXXXXXX VTFAAA+QEKRHSGRQPMDFVRPGARARDPLTGEARRRLWANQRPLKVP LAGGSNQLLWGALASPRAARGCRVE TLSSRAAPGAAE+ GFN A+S GDDPENS GPKT+GE VGPRSRARGGRGERLAVAAMPHELA LLREELDVS RLGC EAGPWESEGRGG VD + ET W
Sbjct: 1 MLDKAPSMSPPNDHPQRAKSLLPPSIVELNSDNVVLSWRAAIGRCSIQVENPDNISASQEWANLDEDTRKHQHDADGWVKRFGGVKLFDVDHVELQTCCGCPRCLHEGDENGQENEDG-DIKGRACSCLCCSSARCGRGCWRPVYQGPHNHCRVQLVQGNRMHFFRLLVRARLPPPNMRNFMRPKNGVVSGSDPDTSGGVMQPNDGGSPDLSLPDRRRQRRRNEYSRIPTVSCCDPEAVTLLSSSPALARGGSRSTAGGGDAHACYRSSGRSQQRGGVGVSLSTPLGDESRATTAAGKNVWFVSDSVFVDSRPPAVTLHGIGTALVLTWPALAGLTGGEQVSYILEQWSQATATMTPSVNRTSPRTDQGVPAELDGRQKSPRGHRRHHNHRRHLAPPKQVDLKEAFAVGTRCWFMPTGLKTGMRYWYRLSLIHEGGKGVGGMWVSYSTSVIPPRCIGMTSRALVLSLPRALDDTARSGSEGESQDRRNSPDRQHHADHNNKSDEHLPTPRDENRLSVDNDAEHLEALEMDGQRLGTRNLPTGSAGDKTEKHGNAEDVGVTTNQHPNGGEEKIEQPMVWYTLEGFSVEEKRWVALYRGPSPEVVVEVQKTTFDVETHLAHLPLLPMLQRSIRLPVDVYRNAGVPPLTQQGLEPSALVRFRLGIDVDITELRHRSLGPLASLELEPTSPDVFGFAATAVAPVAAAAPTTCGESLCPKRTQRSQTCPSPARSAVVRPALRLKSAAEATNQTRPIGHGASNPKTDLGRNRWQWSPATSPAASKMRREGFAFHDASATVGGGFYLERPLLSWGRLQCHSGGAMWECCAIGAGAGEGGQCREYSACVEFATAPLAPRYAAFVVGESPQVKLWWAEPKPDLESSTAPSAFVRPSSAPPFATPARGRGSHRLAL-VEAQESPPGRQSISVAVGDRSAVSPYAQQHPLFTVTLLEPATDGDHPPLRRRVYSGPQQWLGLGRYPEFLSASGAGVFAELAPSTAFAVGLCTNATDSQPESEVQAVVVTAPPAPVMEPIAVANNSAAAEAEGEVFGAVTLKATWRTDIDQRYLPAGIDLPPLSIALEMAHVSEAGLSARGVGQTAAKGAQNGQHASSPRTAAL--ATATV---AVSPTSPNTVRPSSGTRDIPVRTDAGFGQSWTLGSSSWGRLRSWAEEFEIVWRGEEGGAGKEKGVVEAQLPPLPPGMRFLFRVRVECPFGVAVSASTVYETARVAPLSPKGLRACLTTHESRAGNISRCVRLFWDAFHPGHGINVVTSFTVQARRLRPSSPEDQVTRDANHPHPPPTPAHPWQDVSSCPEIGCLDPATLGVPHVLADYRVRAEGPGGKGPWCEPLRVDLLVQEDTPRNGLCLSSGXXXXXXXXXXAVSS--------VTFAAAEQEKRHSGRQPMDFVRPGARARDPLTGEARRRLWANQRPLKVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAGGSNQLLWGALASPRAARGCRVERTLSSRAAPGAAEVSGFNSAISGGDDPENSRGPKTEGEHVGPRSRARGGRGERLAVAAMPHELALLLREELDVSRRLGCDEAGPWESEGRGGRVDSVEDCTGETWKPQW 1587
BLAST of mRNA_E-siliculosus-1a_M_contig97.17650.1 vs. uniprot
Match: D7FTP8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTP8_ECTSI) HSP 1 Score: 2378 bits (6163), Expect = 0.000e+0 Identity = 1263/1552 (81.38%), Postives = 1292/1552 (83.25%), Query Frame = 1 Query: 1 TLGATGTEMLDKAPSLSPPTDHPQRSKSLLPPSIVELNSDNVVLSWRAALGRCSIHAENPDNISESQEWANLDEDTRKHQHDADGSAKKSGDVKTFDVDHVELQTCCGCPRCLHEGDENDQKNEDGGSLEGRACSCRCCSSARCGRGCWRPVYQGPHNQCRVQLVQGNKMHFFRLLVRARLPPPSMRNYMRPKNGLVSGSDPETSGGVMQPNDGGSPNLSSPNRRRQRRQNEYSGIPTVTCSDSEEETLLSGSPALAHGGSRSTAGGGDDHACDRSPDRGQQRGGVGVSLSTQRGDESRATIAAGKNVWFVSDSVFVDSRPPAVTLHGIGTALVLTWPALAGLSGGEQVSYILEQWSQATTTPTPSLNRTSPRADQGAPSELDGRPKSRRGHHRNYNHRRHLAPPKQVDLKEAFAVGTRCWFMPTGLKTGMRYWYRLSLIHEGGKGVGGKWVSYSTSVAPPRCVGMTSRALVLSLPRALDDAARSGSEGESQDRRISPDRQHHADHNNNNDELLLTPRDENRLSVDNDAEHLEAPEMDGQRLGTRSLPTGSAGDKTEKHGDAEDVGVTTNRHPNGGEEKIEQPMVWYTLEGFLVEEKRWVALYRGPSPEVVVEGLEPSTLVGFRLGIDVDITELRHRSLGPLASLELEPTSPDAVGVAATAVAPVAAAAPTTCGENQCPKWTQLSQTYPPPTRPVVVRPALRLKSAADAKKSMGHGASNPKTDLGRNRWQWSPATSPAASKMRREGFAFHDATATVGGGFYLERPLLSWGRLQCHSGGAMWECCAIGAGAGEGGQCREYSACVEFATAPLAPRYAAFVVGESPQVKLWWAEPKPDLRSSTAPSALVRPSSAPPFATPARHRGRHRLAPPEEALDSSPGRQSTAVAVGERSGVSPYAQQHPLFTVILLEPGTDGEHTPIRRRAYSGPRQWLGLGRYPEFFSASGAGVFAELAPSTAFAVGLCTKATDSQPASEVQAVVVTAPPAPVMEPIAVANDSAAAEAEGEVFGAVSLKATWRTDIDQRYLPAGIDLPPLSIALEMAHIPEAGLSAHGVGETAAKVSQNGQQTSSPRTAALTSATATVDGRVVSPTSLNTARPSSGTQDIPVRTDAGFGQSWTLGSSSWGRSRSREEDFEIVWRGEEGGAGTEKGVVEAQSPPLPPGMRFLFRVRVECRFGVAVSASTVYETALVVPLSPKGLRACLTTHESRAGNLSRCVRLLWDAFHPGHGKNVVTSFTVQARRPRPSSPEDQVTRDANHPHPPPTPAHPWQDVCSCPEIGCLDPATLGVPHVLADYRVRAEGPGGKGPWCEPLRVDLLVQEDTPRNGLCLPPGXXXXXXXXXXXXXXXXXXXXXX--VTFAAAKQEKRHSGRQPMDFVRPGARARDPLTGEARRRLWANQRPLKVPPPPAAVATLVLPGAVVTARVRTTAVAEHRCRLAGGSNQLLWGALASPRAARGCRVEETLSSRAAPGAAEICGFNRAVSAGDDPENSLGPKTQGEPVGPRSRARGGRGERLAVAAMPHELASLLREELDVSCRLGCYEAGPWESEGRGGAVD 4650
TLGATGTEMLDKAPSLSPP DHPQRSKSLLPPSIVELN D+VVLSWRAALG+CSIHAENPDNISESQEWANLDEDTR HQH ADGSAKKSGDVK FDVDHVELQTCCGCPRCLHEGDEN+QK+E GGSLEGRACSCRCCSSARCGRGCWRPVYQGPHNQCRVQLVQGNKMHFFRLLVRARLPPPSMRNYMRPK+G+V GSDP+TSGGVMQPNDGGS +L+SPNRRRQRRQNEYSGIPTVTC D EE TL SGSPALAHGGS STAGGGD HACDRSP RGQQRGGVGVSLST GDESRAT AAGK+VWFVSDSVFVDSRPPAVTLHGIGTALVLTWPALAGLSGGEQ+SYILEQWSQATTTPTP LNRTSPR DQGAPSELDGRPKSRRGH HLAPPKQVDLKEAFAVGTRCWFMPTGLKTGMRYWYRLSLIH+GGKGVGGKWVSYSTSVAPPRCVGMTSRALVLSLPRALDDAARSGSE EHLEAPEMDGQ L TRSLPTGSAGDKTE++GDAEDVGVTTN+HPNG EEKIEQPMVWYTLEGFLVEEKRWVALYRGPSPEVVVEGLEPSTLV FRLGIDVDITELRHRSLGPLASLELEPTSPDAVGVAATA AP AAAAPTTCGEN CPK TQL Q P PTR VVVRPALRLKS A+AKKS+GHGA NPKTDLGRNRWQWSPA SPAASKMRREGFAFHDATATVGGGFYLERPLLSWGRLQCHS DGE TPIRR+AYSG RQWLGLGRYPEFFSA+GAGV AELA STAFAVGLCTKATDSQP SEVQAVVVTAPPAPVMEPIAVANDSAAAEAEGEVFGAV+LKATWRTDIDQR+LPAGIDLPPL IALEMAHIPEAGLSA GVGETAAKVSQNGQQ SSP TAALT+ATATVDGR VSPTS NTARPSSGTQ+IPVRTDAGFGQSWTLGSSSWGRSRSR E+FEIVWRGEEGGAGTEKGVVEAQSPPLPPGMRFLFRVRVECRFGVAVSASTVYETA VVPLSPKGLRACL THESRAGN SRCVRLLWDAFHPGHGKNV+TSFTVQARRPRPSSPEDQVTRDANHPHPPPTPAHPWQ VCSCPEIGCLDPATLGVPHVLADYRVRAEGPGGKGPWCEPLRVDLLVQEDTPRNGLCLP G XXXXXXXXXXXXXX VTF AAKQEKRHSGRQPMDFVRPGARARDPLTGEARRRLW NQRPLKVPPPPAAVATLVLPGAVVTAR RTTA+AEHRCRLAGGSNQLLWGALASPRAARGCRVE TLSSRAAPGAA + GFNRA+S GDDPENS GPKT+GE VGPRS ARGGRGERLAVAAMPHELA LLREELDVS RLGC EAGPWESEGRGGAVD
Sbjct: 2 TLGATGTEMLDKAPSLSPPNDHPQRSKSLLPPSIVELNRDSVVLSWRAALGKCSIHAENPDNISESQEWANLDEDTRNHQHAADGSAKKSGDVKIFDVDHVELQTCCGCPRCLHEGDENNQKDEGGGSLEGRACSCRCCSSARCGRGCWRPVYQGPHNQCRVQLVQGNKMHFFRLLVRARLPPPSMRNYMRPKSGVVLGSDPDTSGGVMQPNDGGSHDLTSPNRRRQRRQNEYSGIPTVTCCDPEEVTLWSGSPALAHGGSCSTAGGGDVHACDRSPGRGQQRGGVGVSLSTPLGDESRATTAAGKSVWFVSDSVFVDSRPPAVTLHGIGTALVLTWPALAGLSGGEQISYILEQWSQATTTPTPFLNRTSPRTDQGAPSELDGRPKSRRGHXXXXXXXXHLAPPKQVDLKEAFAVGTRCWFMPTGLKTGMRYWYRLSLIHDGGKGVGGKWVSYSTSVAPPRCVGMTSRALVLSLPRALDDAARSGSE-----------------------------------------EHLEAPEMDGQPLETRSLPTGSAGDKTEEYGDAEDVGVTTNQHPNGEEEKIEQPMVWYTLEGFLVEEKRWVALYRGPSPEVVVEGLEPSTLVRFRLGIDVDITELRHRSLGPLASLELEPTSPDAVGVAATAAAPAAAAAPTTCGENLCPKRTQLGQACPSPTRTVVVRPALRLKSTAEAKKSVGHGARNPKTDLGRNRWQWSPAKSPAASKMRREGFAFHDATATVGGGFYLERPLLSWGRLQCHS---------------------------------------------------------------------------------------------------------------------------------------DGEETPIRRQAYSGLRQWLGLGRYPEFFSANGAGVCAELATSTAFAVGLCTKATDSQPESEVQAVVVTAPPAPVMEPIAVANDSAAAEAEGEVFGAVTLKATWRTDIDQRHLPAGIDLPPLLIALEMAHIPEAGLSARGVGETAAKVSQNGQQASSPGTAALTTATATVDGRAVSPTSPNTARPSSGTQNIPVRTDAGFGQSWTLGSSSWGRSRSRAEEFEIVWRGEEGGAGTEKGVVEAQSPPLPPGMRFLFRVRVECRFGVAVSASTVYETAPVVPLSPKGLRACLATHESRAGNTSRCVRLLWDAFHPGHGKNVITSFTVQARRPRPSSPEDQVTRDANHPHPPPTPAHPWQVVCSCPEIGCLDPATLGVPHVLADYRVRAEGPGGKGPWCEPLRVDLLVQEDTPRNGLCLPSGGXXXXXXXXXXXXXXCESSGAVSSVTFVAAKQEKRHSGRQPMDFVRPGARARDPLTGEARRRLWVNQRPLKVPPPPAAVATLVLPGAVVTARTRTTAMAEHRCRLAGGSNQLLWGALASPRAARGCRVEGTLSSRAAPGAAGVSGFNRAISGGDDPENSRGPKTEGEHVGPRSPARGGRGERLAVAAMPHELALLLREELDVSRRLGCDEAGPWESEGRGGAVD 1377 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig97.17650.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig97.17650.1 >prot_E-siliculosus-1a_M_contig97.17650.1 ID=prot_E-siliculosus-1a_M_contig97.17650.1|Name=mRNA_E-siliculosus-1a_M_contig97.17650.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=1718bp MLDKAPSLSPPTDHPQRSKSLLPPSIVELNSDNVVLSWRAALGRCSIHAEback to top mRNA from alignment at E-siliculosus-1a_M_contig97:233548..241050- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig97.17650.1 ID=mRNA_E-siliculosus-1a_M_contig97.17650.1|Name=mRNA_E-siliculosus-1a_M_contig97.17650.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=7503bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig97:233548..241050- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig97:233548..241050- >mRNA_E-siliculosus-1a_M_contig97.17650.1 ID=mRNA_E-siliculosus-1a_M_contig97.17650.1|Name=mRNA_E-siliculosus-1a_M_contig97.17650.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=10308bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig97:233548..241050- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |