|
|
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig97.17649.1 vs. uniprot
Match: D7FTP7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTP7_ECTSI) HSP 1 Score: 783 bits (2023), Expect = 7.770e-276 Identity = 412/444 (92.79%), Postives = 419/444 (94.37%), Query Frame = 2 Query: 239 MPKIMFIRPAVVGAAMLSAVLPAPDQQASAFSPVPAGLGTSSIVGRGHHQFERGFFSNVRGTSDSLQMAASAEQQSRREGAMKTTPPAPVVAQPPFDLPLVLEECPMCIPDPEVRETDAGYALTFNLPSGISDTGLEVSVSGHLLTIEARTTREENHDVISKSADKGSEGSKGWVMTRCTTKTNAAARSFTLPDSVSNEVTASWGSDNQVVINLTKVAHHDPVNTGGMNNVFSTMEDSGVVPVERRHGDDQHPSASSSAAEYLYGSKLDGAGLKPSSILELDLEFRSLVRDMWHGDGAVRFPTEEQAAATVARARKERKKIVKALRRATMATDVSEKELEYVVKFALPQGATRNDVELMVTPDNNGLRVAFFGEGNHMVSKAVCLPSDASFSDISARFTPEPRNRGRGGAAGGGLEGGKKSRNVAGLEVAVRRAAPQLPKRIEI 1570
MPKIMFIRPAVVGAAMLSAVLPAPDQQ SAFSPVPAGLGTSS+VGRGH +RGFFSNVRG SDSLQMAASAEQQSR VVA PPFDLPLVLEECPMCIPDPEVRETDAGYALTFNLPSGISDTGLEVSVSG LLT+EARTTREENHDVISKSADKGSEGSKGWVMTRCTTKTNAAARSFTLPDSVSNEVTASWG+DNQVVINLTKVAH+DPVN GGMNNVFSTMEDSGVVPVERRHGDDQHPSASSSAAEYLYGSKLDGA LKPSSILELDLEFRSLVRDMWHGDG+VRFPTEEQ AATVARARKERKKIVKALRRATMATDVSEKELEYVVKFALPQGATR+DVELMVTPDNNGLRVAFFGEGNHMVSKAVCLPSDASFSDISARFTPEPR RGRGGAAGGGLEGGKKSRNVAGLEVAV RAAPQLPK IEI
Sbjct: 1 MPKIMFIRPAVVGAAMLSAVLPAPDQQVSAFSPVPAGLGTSSVVGRGH---QRGFFSNVRGKSDSLQMAASAEQQSRXXXXXXXXXXXXVVAHPPFDLPLVLEECPMCIPDPEVRETDAGYALTFNLPSGISDTGLEVSVSGRLLTVEARTTREENHDVISKSADKGSEGSKGWVMTRCTTKTNAAARSFTLPDSVSNEVTASWGNDNQVVINLTKVAHYDPVNAGGMNNVFSTMEDSGVVPVERRHGDDQHPSASSSAAEYLYGSKLDGASLKPSSILELDLEFRSLVRDMWHGDGSVRFPTEEQVAATVARARKERKKIVKALRRATMATDVSEKELEYVVKFALPQGATRDDVELMVTPDNNGLRVAFFGEGNHMVSKAVCLPSDASFSDISARFTPEPRKRGRGGAAGGGLEGGKKSRNVAGLEVAVGRAAPQLPKSIEI 441
BLAST of mRNA_E-siliculosus-1a_M_contig97.17649.1 vs. uniprot
Match: A0A6H5L316_9PHAE (SHSP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L316_9PHAE) HSP 1 Score: 124 bits (312), Expect = 3.540e-26 Identity = 131/400 (32.75%), Postives = 182/400 (45.50%), Query Frame = 2 Query: 569 DPEV-RETDAGYALTFNLPSGISDTGLEVSVSGHLLTIEARTTREENHDVISKSADKGSEGSKGWVMTRCTTKTNAAARSFTLPDS-VSNEVTASWGSDN-QVVINLTKVAHHDPVNTGG------MNNVFSTMEDSGVVPVERRHGDDQHPS---ASSSAAEYLYGSK-------LDGAGL----------KPSSILE-LDLEFRSLVRDMW--HGDGAVRFPTEEQAAATVARARKE------------------RKKIVKALRRATMATDVS--EKELEYVVKFALPQGATRNDVELMVTPDNNGLRVAFFGEG------NHMVSKAVCLPSDASFSDISARFTPEPRNRGRG--------GAAGGGLEGGKKSRNVAGLEVAVRRAAPQLPKRIEI 1570
DP V ET+ Y L F+LP+G+ GLEVSVS LLT++A TRE+ D GWV TR +++ ++ +RSF LP+ V + TAS +V N K + +T ++ D+ P P+ S++ AE +D A +P+ E +D EFR + MW H ++ PT+E+ A A AR+ K V A+RRATMA ++S E+ YVV+FALP+G TR DV+L V P N+ +RVA + V K V LP DA S+ISA+F E G+G AGGG G K VAG+EV V +A+P PK +EI
Sbjct: 121 DPAVILETNDLYTLAFDLPAGVDHDGLEVSVSDRLLTVKASITREQEADPFITRG--------GWV-TR-SSRVDSVSRSFVLPEGLVESSATASLSEGKAEVRFNKDKSVRGEAASTAAPPITPSTTGTAASAGDTTAAPTSSADAGRTPPTDSTGSTAVAEXXXXXXXXXXXXPVDAASTPAASTEPRPSRPTFPFEAVDQEFREFAKAMWGEHVLERLQVPTQEELAEQAAMAREAWTKRXXXXXXXXXXXXXXXXKRVLAMRRATMAANISLSEEGSSYVVRFALPEGTTREDVKLTVNPSNS-IRVAVSARSTAAAGPDRPVYKDVVLPKDAILSEISAKFEAEQHRDGKGTIEEEGEEATAGGG--GATKEGAVAGVEVTVGKASPPQPKHVEI 507
BLAST of mRNA_E-siliculosus-1a_M_contig97.17649.1 vs. uniprot
Match: D8LP10_ECTSI (SHSP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP10_ECTSI) HSP 1 Score: 121 bits (303), Expect = 5.010e-25 Identity = 129/401 (32.17%), Postives = 175/401 (43.64%), Query Frame = 2 Query: 578 VRETDAGYALTFNLPSGISDTGLEVSVSGHLLTIEARTTREENHDVISKSADKGSEGSKGWVMTRCTTKTNAAARSFTLPDS-VSNEVTASWG-SDNQVVINLTKVAHHD----------PVNTGGMNNVFSTME------DSGVVPVERRHGDDQHPSASSSAAEYLYGSKLDGAGL----------KPSSILE-LDLEFRSLVRDMWHGDGAVRF--PTEEQAAATVARARKERKKI------------------VKALRRATMATDVSEKE--LEYVVKFALPQGATRNDVELMVTPDNNGLRVAFFGEG-------------NHMVSKAVCLPSDASFSDISARFTPEPRNRGRGGAAGGGLE------GGKKSRNVAGLEVAVRRAAPQLPKRIEI 1570
+ ETD YAL F+LP+G+ GL+VSVS LLT++A TRE+ D + GWV TR +++ ++ +RSF LP+ V + TAS S +V N K + P TG + + T D+G P+ G +P+S E +D EFR + MW D R PT+E+ A A AR+ K V A+RRATMA D+S E YVV+FALP+G TR DV+L V P + +RVA + V K V LP DA S+ISA+F E +G A GG + G K VAG+EV V +A+P PK +EI
Sbjct: 121 ILETDDLYALAFDLPAGVDHDGLDVSVSDRLLTVKASITREQEADPFTTRG--------GWV-TR-SSRVDSVSRSFVLPEGLVESSATASLAESKAEVRFNKDKSVRGEAASTAAPPVTPSTTGTVASAGDTTAAPASSADAGRTPLTDSTGSXPXXXXXXXXXXXXXXXXXXXXXXXXXXXEPRPSRPASPFEAVDQEFREFAKAMWGEDVLERLQVPTQEELAEQAAMAREAWAKREAXXXXXXXXXXXXXXXRVLAMRRATMAADISLSEDGSSYVVRFALPEGTTREDVKLTVNPSKS-IRVAVSATSXXXXXXXXXXXXPDRSVYKDVALPKDAILSEISAKFEAEQHPDEKGNAEEGGEKATAGGGGATKEGAVAGVEVTVGKASPPQPKNVEI 510
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 1338 |
| Model size | 2983 |
| Exons | 4 |
| Ec32 ortholog | Ec-06_009340.1 |
| Ec32 ortholog description | HSP20-like chaperone |
| Hectar predicted targeting category | chloroplast |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936547.4051962-UTR-E-siliculosus-1a_M_contig97:226002..226240 | 1622936547.4051962-UTR-E-siliculosus-1a_M_contig97:226002..226240 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig97 226003..226240 + |
| 1696251124.974592-UTR-E-siliculosus-1a_M_contig97:226002..226240 | 1696251124.974592-UTR-E-siliculosus-1a_M_contig97:226002..226240 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig97 226003..226240 + |
| 1622936547.4706907-UTR-E-siliculosus-1a_M_contig97:231204..232611 | 1622936547.4706907-UTR-E-siliculosus-1a_M_contig97:231204..232611 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig97 231205..232611 + |
| 1696251125.0564117-UTR-E-siliculosus-1a_M_contig97:231204..232611 | 1696251125.0564117-UTR-E-siliculosus-1a_M_contig97:231204..232611 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig97 231205..232611 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936547.4188733-CDS-E-siliculosus-1a_M_contig97:226240..226662 | 1622936547.4188733-CDS-E-siliculosus-1a_M_contig97:226240..226662 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig97 226241..226662 + |
| 1696251124.9856508-CDS-E-siliculosus-1a_M_contig97:226240..226662 | 1696251124.9856508-CDS-E-siliculosus-1a_M_contig97:226240..226662 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig97 226241..226662 + |
| 1622936547.4304328-CDS-E-siliculosus-1a_M_contig97:229134..229309 | 1622936547.4304328-CDS-E-siliculosus-1a_M_contig97:229134..229309 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig97 229135..229309 + |
| 1696251125.000486-CDS-E-siliculosus-1a_M_contig97:229134..229309 | 1696251125.000486-CDS-E-siliculosus-1a_M_contig97:229134..229309 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig97 229135..229309 + |
| 1622936547.4426947-CDS-E-siliculosus-1a_M_contig97:229998..230432 | 1622936547.4426947-CDS-E-siliculosus-1a_M_contig97:229998..230432 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig97 229999..230432 + |
| 1696251125.018438-CDS-E-siliculosus-1a_M_contig97:229998..230432 | 1696251125.018438-CDS-E-siliculosus-1a_M_contig97:229998..230432 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig97 229999..230432 + |
| 1622936547.4580019-CDS-E-siliculosus-1a_M_contig97:230897..231204 | 1622936547.4580019-CDS-E-siliculosus-1a_M_contig97:230897..231204 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig97 230898..231204 + |
| 1696251125.0427787-CDS-E-siliculosus-1a_M_contig97:230897..231204 | 1696251125.0427787-CDS-E-siliculosus-1a_M_contig97:230897..231204 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig97 230898..231204 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig97.17649.1 >prot_E-siliculosus-1a_M_contig97.17649.1 ID=prot_E-siliculosus-1a_M_contig97.17649.1|Name=mRNA_E-siliculosus-1a_M_contig97.17649.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=446bp
MPKIMFIRPAVVGAAMLSAVLPAPDQQASAFSPVPAGLGTSSIVGRGHHQ
FERGFFSNVRGTSDSLQMAASAEQQSRREGAMKTTPPAPVVAQPPFDLPL
VLEECPMCIPDPEVRETDAGYALTFNLPSGISDTGLEVSVSGHLLTIEAR
TTREENHDVISKSADKGSEGSKGWVMTRCTTKTNAAARSFTLPDSVSNEV
TASWGSDNQVVINLTKVAHHDPVNTGGMNNVFSTMEDSGVVPVERRHGDD
QHPSASSSAAEYLYGSKLDGAGLKPSSILELDLEFRSLVRDMWHGDGAVR
FPTEEQAAATVARARKERKKIVKALRRATMATDVSEKELEYVVKFALPQG
ATRNDVELMVTPDNNGLRVAFFGEGNHMVSKAVCLPSDASFSDISARFTP
EPRNRGRGGAAGGGLEGGKKSRNVAGLEVAVRRAAPQLPKRIEIT* back to topmRNA from alignment at E-siliculosus-1a_M_contig97:226003..232611+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_M_contig97.17649.1 ID=mRNA_E-siliculosus-1a_M_contig97.17649.1|Name=mRNA_E-siliculosus-1a_M_contig97.17649.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=6609bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig97:226003..232611+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GAGCTGGTGGTGCAACAGACGCCCTTTGCCTCCCACTTCCCCCCCCACCC
CCACTTCCCCACGCGACCCTGCAACAGACCCTACACTGTGAAGCTATCGA
GCACCAAAACTAGAATCAGAAGGCGACCGGGTCCACACCAACCGCGATAT
CTTGTTTGAGACTCCACGACTCTACGCGATCTTTCGCCGCGCGCCGAAAG
CAGCAGCTGTTTGAAGTTTGACAACAGCAACCAACGACATGCCGAAGATC
ATGTTCATCCGCCCGGCCGTGGTGGGGGCTGCGATGCTCTCCGCCGTGCT
GCCCGCGCCCGATCAACAAGCGTCAGCCTTTTCGCCAGTTCCGGCGGGCC
TAGGTACGTCGTCTATTGTTGGGCGAGGGCATCATCAATTCGAAAGAGGT
TTCTTTTCAAATGTGCGCGGAACATCCGACTCCTTGCAAATGGCAGCCAG
CGCCGAACAGCAGTCTCGTCGTGAGGGGGCGATGAAGACGACCCCCCCCG
CGCCTGTCGTAGCACAGCCGCCCTTCGACCTGCCCCTCGTGCTGGAGGAA
TGCCCGATGTGTATCCCAGACCCCGAGGTTCGCGAGACCGACGCCGGGTA
CGCGCTCACCTTCAACTTGCCGAGCGGAATCAGCGACACCGGATTGGAGG
TGTCGGTCAGGTCAGTCGTTCAGCTTAGTTGGTTGTTCCTCCTTGAAGTT
CACTGAGTGTAACCAGCTGGTTTCAACCTGGACATCACTCCCCCCCCCTC
CCCCCCCTCGTCCTTACTACGTGGTTATGTCTCTCGCAGTTGCCTTGCGC
CGTGAGGCCTAGGACTTCTAGCTAGTCTTCCACAGAGAGCCGTGGTTGAC
TATTGTTCTCTCATGTTTTCAAAAACGGAAGTGGCCTCTGGGTGCTTAGT
CATATTCTGGGGGGCAGCAGTCTACGCCGTGCGGAATATGTTCGACGTAT
GCATACCATCCCCGCGATCACACAGGAGAAAAGGCACTGGGTGTGTTTTT
GTCTCTCTCGCCTCTGGCATGCTCGTGTTCGGCGGTTAGTGTTTTGAAAC
GTCCCATTCATTCACATTCCCAGTGCCTGTGCGGACCGACCGTTCGTTGG
CTCTCGGCGTCAGTAGTTTCAAATTTGCCTGCGCTCATCGGGCACCTACA
GATCGTCGTAGTGGTGGGACAAAACGTGTTTGTCCTCCTCAGAAGAATAC
AAACAATATCACCTATGACCTACCGTACGTACCCGTTCGAGACACAGACT
ATGCATACCACAACAGTTAGTTGCAAGGGATGTGTGGTTGAGTTTTTCCA
GTGGGTGGGGTCTGTGACGTTTTGTGAGTATCAACATGCGTTCGGCTGGA
TGTCTCCTTGTTTTATTTCGGCCTGCCGAAAGGTGCTCCAAGGTGGCACC
CCTGTAAGTTGGCGTGTATGCTATGTTTGTTGCTGTCTTCACATTACAAC
CTACACATGTAAGTTCCTCAGATACAGTCGTGGCTCCAATGTAAGAGGAG
GGTGGTGTGACAAAGGCCCTCCACGCACTAACATCGGAGCCCTCTCATGT
ACTTCCCGGAAAAGAGAGTACTCAACTATACTCCATAAGAAGGTCGAGTC
GGTGACACTCGATTTCGCTCCCTTACATATATCGTCTCCCCAAAACCAAA
AAACCAAAATCATTCCCCAAACCAAAAACAATTAATAGGCAGAGCACCCA
TAAATAGGGCAATTTTTTTGTAAGACACGGAAGAACTTCCAACAATTATC
TATGTTTTAGAGGGGTAGAGCCGGGTGGATGCCCATCTCCCACCAATCAC
CCGTCGATTTTGTAAGACATTTTGTAAGACAGAGACAGATGATTGGGCGA
TGGGCACGACGCTCTCGGCAGAATCACCGAAATCCTCTTGCACAGCAGCA
CCATACACATCACGCGTAGACAACATACGATACAACCAGCACAGCAGCAT
ACGGACTGCTGTAGGCCAAGGGCAGCCAAAGGCACACATCATGGGAGGCG
TCGGGTATGACCCTTGCAGCCCGTTGCCTGCTGTCGGCAGCACAAGGGAG
TGACGACGCAAGTCAATCCGCGGTCCGTCTGCATCATCACCCTCAACCTA
CCGATGGATATTTGGAGCTTTCCGCACAGACGCATCCCCACAACAGAGAA
AACGAGGCCTACACACTGCTGTAGGTCAAGGCCGGCCAAAGGCACACATC
ATGGCTGGCGTCGGAAGCTATTTTTAGACCCCGAGGCCTACTGGTAGCAG
CGTCAGCGAGGGAACATGCGAGTGCACACAACAAGTCAGATCTCTGTCTG
CGGTCTCTTCGTCTGCCGGCCGATCTTTGCTTCCATAACAGACGCACCCA
GAGACAGAGACAAGTGAGACGTACACAGCGCTGTAAGCCAAGGGCGGCCA
AATACACACGTCGTGGGGGGTCCGGGCCAATTTTTAGAGCCCGTTGCCCT
TTACTCGTGGCAACAGCGAAGAAAGCAAGTGCGCACCCATGCACAGCAGC
AGCAGCAGCAGCGGCGGCGGCAACAACAGCAGGCAGCAGCAGCACTGCTG
CCGCTGAGCTGTGATGATGATGAGAATTAAACAGCGCTCCCATTCATCCC
CTGACTGACTGGTGGTACCGGGTGAGGTGTGAGCGTGCGCACTGGTAACC
TACGTGGTGGCTTAGGCTCCATCCATATCTATCTTCGCTTGCTTTGATGT
CTCTCTCCGACCCTTCTTTTCGCGCTTCGCGCGAAATAATTTAATTTCTT
TTTGTTGGACCCCTATGTATGGGAGGGGAGCCTAATTATATAAAAGAAAC
ACACCCCATTTTATTGTATGATACTCCCCGAACCTCAAAAGTAAATACTC
CCCAAATCAAACAAACCAAAACGACATAATTAACGCACCCATGTTTTCGG
AGCCCCCTCTTATATACGGAGGTATCAAATACATCATGTAAAAGGCATTT
GTTGCTCTTGTGCCGGTGTGTACTCTATTTGTGTTGGTTTGTTGCTAAAA
TACGAGAAACAAAAAGCTCCTGCTCTCAAGGACCATCGACCGCCGTGATG
CACTTCTATCCCACTGACACGTACTGCTGATTGATGTCTTGGTTGTGCCT
AACGACATTCTTTCATGTTTCCTGCTCCCCAGTGGACACCTGCTAACCAT
CGAGGCCCGGACAACGCGCGAAGAGAACCACGACGTGATCAGCAAGTCGG
CTGACAAGGGCAGCGAAGGCTCCAAGGGATGGGTTATGACTCGATGCACA
ACCAAGACGAATGCCGCCGCGCGCTCCTTCACGCTCCCGGATAGCGTTTC
CAACGAGGTGAACAAACAACAAGCACGATTGGAAAATGAAGATACCTTCG
GCTTGTAACGACACGGCGGGCTTCCCTCGATAGATGGAGACCCTGGTCGC
GGTAGTCTTTACTGTACACCCCACCAGGGACTGGCATTTGAATTTGTTGA
GAATTGGCAAGGGGGGACGGTCTCGGAAGGAGGAGAGCGAAAGAGAGAGA
CAACGAAGGGGGGGCTTTTGCTGAAGAATACGATTTTTTTTCCCCGCTCA
CCGTCTCTCCTCAGTGTGGCTTTGGAGTATTGTAGTCGTATCAATAGCAC
GTTTTATTGGTGTTCAACGCCAGCAAGATACCCCGCTCAGCTGGTATCCT
ACCTCACAGTAGTATGTGCACCAATAGTTGAACACCCCCATATCTAGAAG
GGAAGTTTTTCCCTTCTTTCTGATGAGCATTGCAGGGGGTGAGGCGACAA
TGAGATATTTATGTTAGTCCATAGAGATATTGATATTGGGTTGTGGAAGC
GCGCCGCAAGAGCCAAAATGAAGTGAGGAGCACGTACTTTTCGCACACTC
TTCTGACTACCATGATTTTGTACATGGCGTGTTTTTTTTTTGTCGAGATG
GTCACCATCATGCACGCACGTTTTGCACGAAGAAACCATTAGCATAAACA
TATGTACGCATCGTCAACGGCTTGTCCGAAACATGCATACCCGCAGGTCA
CCGCTTCCTGGGGCAGCGACAACCAGGTCGTGATCAACCTCACCAAGGTC
GCCCACCACGACCCGGTCAACACCGGCGGAATGAACAACGTCTTCTCGAC
CATGGAAGACTCGGGGGTTGTTCCCGTCGAGCGCCGCCACGGCGACGACC
AACACCCGTCCGCCTCGTCCTCCGCCGCCGAGTACCTCTACGGCTCGAAA
CTCGACGGCGCCGGCCTTAAGCCTTCGAGCATCCTGGAGCTGGACCTCGA
GTTCCGTAGCCTCGTGAGGGACATGTGGCATGGCGATGGTGCCGTGAGGT
TTCCCACGGAGGAGCAGGCGGCGGCCACGGTCGCCAGGGCCCGGAAGGAG
AGGAAGAAGATCGTCAAGGCCCTCAGGAGGGCCACGATGGCCACGGACGT
GTCGGAGAAGGAGCTGGAGTACGTCGTCAAGTGCGTGGGATGCGTGAAAC
CAGTTTCTCTCCGAGAGTCTTAGGTTTTTTTTTTACGTGTTTAGCAACAC
CGAAGTTCAATGCAGGGCTCTTTCTGCGGCATGTGTTTGGTGATTTTTTA
CCCGCTGTTCTGCGTAGAGTCACGATGTCTCGTAGTCGATGTACCCTACT
GTTGTTGGCAGGGACCCAAGCAGCGCTCGCGTCTTGCGTAGGGTCGGTTT
CGGCAAAATCAAATGCCTGAAAATGGATAGGTCCGAGACTCTCTCAACAA
CCATTCACTTTGCCACCCACTCTCTCATCGGACGGGTTATCCATGCTTTC
TTCTTAAGTCCACAAAGGAAACATCAAGTGTTCGACGTTTCTGATATTTG
GCTCCCGTCTCTCCCTCCCTCGAAACCCGTCAACGTCGCGCGTACCCCCT
TGGAATATGGACTCAACAAAATTTCATTGGTGCCCGCGCTCGCAGGTTTG
CTCTGCCGCAGGGCGCGACTCGCAACGACGTGGAGCTGATGGTGACGCCG
GATAACAACGGGCTTCGCGTGGCCTTCTTCGGCGAAGGCAACCACATGGT
CTCCAAGGCCGTGTGCCTGCCGTCGGACGCTTCGTTCTCCGACATCTCGG
CCAGGTTCACGCCGGAGCCACGCAATCGCGGCCGCGGTGGTGCTGCCGGT
GGCGGTCTCGAGGGAGGCAAGAAATCGCGCAACGTTGCTGGGCTGGAGGT
CGCTGTCCGCAGGGCCGCCCCCCAGCTGCCCAAGAGAATCGAAATCACGT
AGTAGTCCAGCCGACGACAAGCACTTCCTACTGCTACAACGGCTGCCCGG
CTCGGTAACTCTGCGTTGATGTATGTTGGTTTTTTGTTTCCTGGGGGTTG
TTGTATATTGTGATGCCCATACGGGGGAGCAGAGTTTTTGGTTGCGAATT
GTCGTCTGTCAAAAACCAATGTATGTTCAAATGTATTCTGCGGCCGTAGG
GGGCATTCGGTCGTGGGGGAAGACGTGGCTGACACGTGGCTTGAAGAAGA
TCGGGCGACGTGCAGGTGTCTGCCGTCGAACCGTGTGATGTTTTGTGGCG
CATTTTGGCAGCAGCGAAACGGTATTATATGCGGCGTTGTGTGGTAACCT
GGGCTGGTTGCCGTGAAATAGAGGCGATGGACGTGATTTGTCGCCTGTCG
AGGGCTTGTTTGATTTACAACTAGAATTACCAATTTAATTTTTTGTACTA
CTGTCCTGTACATACAAAGGCGCCAGGGGTCGACGTCCTTGGTGCCACAT
CGTGGATGAAAGAAAGGCACAGTTCGAAACCCTGAGCATTGTTGTAGATA
AATCGGAGATGGTGACTATGTCGAAGAGTGGCGTGGTGTTGTCTTGGGCG
ACGGTGAATGGAATATATGGCGAAACTGGCCCCCGTCTGGTCTACCGTAG
AAGTTATTTGTTAAGACGTGCGTGCAGTCGAAGGCAGGGTGGCACTGCCG
CAACGCATGGTGTACATCGTTTGTCACGAGATGAGGAAGGACGGGTGCAA
GGGGGACAAGCGAGTCGATAAATGGTATGGTTTTAACAAACACAAGGTGT
AGCCGTAGGGACAAAAAGTGATATTGGTGTAGCATGGAAGGGCGCGAGAG
GGGCACATACCTCAGGGAACCCCCTACTACCCTGGTTGGTCCCGGGAGCG
TGCGGAGCGGGTGTGGCGGGGCAACGATTGTCGATCGGCTCACGTTGTGT
GTAGTGCATGTTTAGAGTTGTGTGGAAAGATCACGGTACATACTCGGGTT
TTCATGAGCAAGAAAAACAATTACTGTCTCTCTTTCGATCTTGAAGGCGT
CTGTTGGTCGGCATTTAGTTGTTGCGCAAACAACGTCCACTTTCTTCAAA
AATTACGTCGGTTACACCGACTCTAACCCAATTGGTTCATTCCATTTGGT
TTGGTTCAGAGTTACATGGGCACAACGCGCGCCTCCGGAGCTGGCTCATC
AGAGAGCATGTTAGGGGTGTCACCAAGGCGTGATGAAAGATGAAAGTCAA
GCATACGTTGGACCATGGTGTGAATCAGTGCCATCGGCCATCGGTGTCGT
TTCCGTTTCCCTAGCTCGAACAGCTCACGCAGCTGACGTGTTTCGACTTG
AAGAGCCCAGTGAACCTTAACGAACCAAGAAGAACAATTCGCCACAAAGT
CCGTGCAAG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_M_contig97:226003..232611+ >mRNA_E-siliculosus-1a_M_contig97.17649.1 ID=mRNA_E-siliculosus-1a_M_contig97.17649.1|Name=mRNA_E-siliculosus-1a_M_contig97.17649.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2676bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig97:226003..232611+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCCGAAGATCATGTTCATCCGCCCGGCCGTGGTGGGGGCTGCGATGCT
CTCCGCCGTGCTGCCCGCGCCCGATCAACAAGCGTCAGCCTTTTCGCCAG
TTCCGGCGGGCCTAGGTACGTCGTCTATTGTTGGGCGAGGGCATCATCAA
TTCGAAAGAGGTTTCTTTTCAAATGTGCGCGGAACATCCGACTCCTTGCA
AATGGCAGCCAGCGCCGAACAGCAGTCTCGTCGTGAGGGGGCGATGAAGA
CGACCCCCCCCGCGCCTGTCGTAGCACAGCCGCCCTTCGACCTGCCCCTC
GTGCTGGAGGAATGCCCGATGTGTATCCCAGACCCCGAGGTTCGCGAGAC
CGACGCCGGGTACGCGCTCACCTTCAACTTGCCGAGCGGAATCAGCGACA
CCGGATTGGAGGTGTCGGTCAGATGCCGAAGATCATGTTCATCCGCCCGG
CCGTGGTGGGGGCTGCGATGCTCTCCGCCGTGCTGCCCGCGCCCGATCAA
CAAGCGTCAGCCTTTTCGCCAGTTCCGGCGGGCCTAGGTACGTCGTCTAT
TGTTGGGCGAGGGCATCATCAATTCGAAAGAGGTTTCTTTTCAAATGTGC
GCGGAACATCCGACTCCTTGCAAATGGCAGCCAGCGCCGAACAGCAGTCT
CGTCGTGAGGGGGCGATGAAGACGACCCCCCCCGCGCCTGTCGTAGCACA
GCCGCCCTTCGACCTGCCCCTCGTGCTGGAGGAATGCCCGATGTGTATCC
CAGACCCCGAGGTTCGCGAGACCGACGCCGGGTACGCGCTCACCTTCAAC
TTGCCGAGCGGAATCAGCGACACCGGATTGGAGGTGTCGGTCAGTGGACA
CCTGCTAACCATCGAGGCCCGGACAACGCGCGAAGAGAACCACGACGTGA
TCAGCAAGTCGGCTGACAAGGGCAGCGAAGGCTCCAAGGGATGGGTTATG
ACTCGATGCACAACCAAGACGAATGCCGCCGCGCGCTCCTTCACGCTCCC
GGATAGCGTTTCCAACGAGTGGACACCTGCTAACCATCGAGGCCCGGACA
ACGCGCGAAGAGAACCACGACGTGATCAGCAAGTCGGCTGACAAGGGCAG
CGAAGGCTCCAAGGGATGGGTTATGACTCGATGCACAACCAAGACGAATG
CCGCCGCGCGCTCCTTCACGCTCCCGGATAGCGTTTCCAACGAGGTCACC
GCTTCCTGGGGCAGCGACAACCAGGTCGTGATCAACCTCACCAAGGTCGC
CCACCACGACCCGGTCAACACCGGCGGAATGAACAACGTCTTCTCGACCA
TGGAAGACTCGGGGGTTGTTCCCGTCGAGCGCCGCCACGGCGACGACCAA
CACCCGTCCGCCTCGTCCTCCGCCGCCGAGTACCTCTACGGCTCGAAACT
CGACGGCGCCGGCCTTAAGCCTTCGAGCATCCTGGAGCTGGACCTCGAGT
TCCGTAGCCTCGTGAGGGACATGTGGCATGGCGATGGTGCCGTGAGGTTT
CCCACGGAGGAGCAGGCGGCGGCCACGGTCGCCAGGGCCCGGAAGGAGAG
GAAGAAGATCGTCAAGGCCCTCAGGAGGGCCACGATGGCCACGGACGTGT
CGGAGAAGGAGCTGGAGTACGTCGTCAAGTCACCGCTTCCTGGGGCAGCG
ACAACCAGGTCGTGATCAACCTCACCAAGGTCGCCCACCACGACCCGGTC
AACACCGGCGGAATGAACAACGTCTTCTCGACCATGGAAGACTCGGGGGT
TGTTCCCGTCGAGCGCCGCCACGGCGACGACCAACACCCGTCCGCCTCGT
CCTCCGCCGCCGAGTACCTCTACGGCTCGAAACTCGACGGCGCCGGCCTT
AAGCCTTCGAGCATCCTGGAGCTGGACCTCGAGTTCCGTAGCCTCGTGAG
GGACATGTGGCATGGCGATGGTGCCGTGAGGTTTCCCACGGAGGAGCAGG
CGGCGGCCACGGTCGCCAGGGCCCGGAAGGAGAGGAAGAAGATCGTCAAG
GCCCTCAGGAGGGCCACGATGGCCACGGACGTGTCGGAGAAGGAGCTGGA
GTACGTCGTCAAGTTTGCTCTGCCGCAGGGCGCGACTCGCAACGACGTGG
AGCTGATGGTGACGCCGGATAACAACGGGCTTCGCGTGGCCTTCTTCGGC
GAAGGCAACCACATGGTCTCCAAGGCCGTGTGCCTGCCGTCGGACGCTTC
GTTCTCCGACATCTCGGCCAGGTTCACGCCGGAGCCACGCAATCGCGGCC
GCGGTGGTGCTGCCGGTGGCGGTCTCGAGGGAGGCAAGAAATCGCGCAAC
GTTGCTGGGCTGGAGGTCGCTGTCCGCAGGGCCGCCCCCCAGCTGCCCAA
GAGAATCGAAATCACGTAGGTTTGCTCTGCCGCAGGGCGCGACTCGCAAC
GACGTGGAGCTGATGGTGACGCCGGATAACAACGGGCTTCGCGTGGCCTT
CTTCGGCGAAGGCAACCACATGGTCTCCAAGGCCGTGTGCCTGCCGTCGG
ACGCTTCGTTCTCCGACATCTCGGCCAGGTTCACGCCGGAGCCACGCAAT
CGCGGCCGCGGTGGTGCTGCCGGTGGCGGTCTCGAGGGAGGCAAGAAATC
GCGCAACGTTGCTGGGCTGGAGGTCGCTGTCCGCAGGGCCGCCCCCCAGC
TGCCCAAGAGAATCGAAATCACGTAG back to top
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