mRNA_E-siliculosus-1a_M_contig97.17642.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig97.17642.1 vs. uniprot
Match: A0A6H5K116_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K116_9PHAE) HSP 1 Score: 542 bits (1397), Expect = 3.380e-186 Identity = 377/561 (67.20%), Postives = 386/561 (68.81%), Query Frame = 1 Query: 67 MRRVRQTANVVANPIGRTLARRKSCPHNRLVESTTTERGASAAALRRDLQRPPPLPRGGGLGKSSSLLSAQHRVRPLPLRSSQQHGASGSGETKRNKSSAAVAAGSFPASWNHAGPPRRLAGTAWG-TSTGLSAAGSGGGPPAPRGVAATATVDTAARTRMDGLHTTAARRGKDNGASSSPPAXXXXXXXXXXKSADGTPPRRGEKNDGDSAVGSGGGEASGIKKERGWXXXXXXXXXXXXXXXXXXXXXXXXXXXXAYGGSAGSGAG-----------------GVVGDLPHQVSELYAEMERNLMSRMHAQDKNRFRAVGLSSVLILIWVLSMFGTEIRRYFASQTAEVARETLKVEALQVQTQELATALVQALLNDQEVVRAGALFLREASANPETQAALVSLALYVLQHPDTRAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIKTQQFRQGASELVVALGQSQEVYGAVVDLASRVIQDPKVQATLSTVLSASSREVLQDQVVFDHSKVFVAQVMGDDAVQRSGGDALWSSVQYALQTRLFKATGICLLAAGSAV 1695
MRRVRQTAN VANPIGR LA KSCP+NRLVES TTERGA AAA RRDL RPPPLPRGGGLG+SS LLSAQ+RVRPLPLRSSQQHGA GS E KRNK SAA AAG P S N P R LAGTAWG TS GLS AG G D A KSADG PPR G SG+ KERGW G+ G GA GVVGDLP+QVSELYAEMERNLMSRMHAQDKNRFRAVGLSS+LILIWVLSMFGTEIRRYFASQTAEVARETLKVEALQVQTQELATALVQALLNDQEVVRAGALFLREASAN ETQAALVSLALYVLQHPDTRA XXXXXXXXXXXXXXXXXXXX VI+ QFRQGASELVVALGQS+EVYGA VQATLSTVLSASSREVLQDQVVFDHSKVFVAQVMGDDAVQRSGGDALWSSVQYALQTRLFKATGICLLAAGSAV
Sbjct: 1 MRRVRQTANAVANPIGRALAG-KSCPYNRLVESKTTERGA-AAAWRRDLHRPPPLPRGGGLGESSRLLSAQYRVRPLPLRSSQQHGAFGSEEMKRNKISAAAAAGLSPTSCN---PQRHLAGTAWGRTSRGLSDAGRG---------------DAEA-----------------------------------GKSADGAPPR-GXXXXXXXXXXXXXXXTSGMIKERGWAAAAATGGDSAARRA----------------GNGGRGAXXXXXXXXXXXXXXXXXXGVVGDLPYQVSELYAEMERNLMSRMHAQDKNRFRAVGLSSLLILIWVLSMFGTEIRRYFASQTAEVARETLKVEALQVQTQELATALVQALLNDQEVVRAGALFLREASANSETQAALVSLALYVLQHPDTRAXXXXXXXXXXXXXXXXXXXXXQVTDMALKVIRNPQFRQGASELVVALGQSEEVYGAXXXXXXXXXXXXXVQATLSTVLSASSREVLQDQVVFDHSKVFVAQVMGDDAVQRSGGDALWSSVQYALQTRLFKATGICLLAAGSAV 489
BLAST of mRNA_E-siliculosus-1a_M_contig97.17642.1 vs. uniprot
Match: D7FTZ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ2_ECTSI) HSP 1 Score: 222 bits (566), Expect = 1.630e-65 Identity = 129/159 (81.13%), Postives = 130/159 (81.76%), Query Frame = 1 Query: 1096 QVQTQELATALVQALLNDQEVVRAGALFLREASANPETQAALVSLALYVLQHPDTRAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIKTQQFRQGASELVVALGQSQEVYGAVVDLASRVIQDPKVQATLSTVLSASSREVLQDQVVFDHSKVFVAQV 1572
QVQTQELATALVQALLNDQEVVRAGALFLREASANPETQAALVSLALYVLQHPDTRAE VI+T QFRQGASELVVALGQSQEVYGAVVDLASRVIQDPKVQATLSTVLSASSREVLQDQVVFDHSKVFVAQV
Sbjct: 15 QVQTQELATALVQALLNDQEVVRAGALFLREASANPETQAALVSLALYVLQHPDTRAETKVLAKKLIKAILDDPDTVLQVTDMVLKVIRTPQFRQGASELVVALGQSQEVYGAVVDLASRVIQDPKVQATLSTVLSASSREVLQDQVVFDHSKVFVAQV 173
BLAST of mRNA_E-siliculosus-1a_M_contig97.17642.1 vs. uniprot
Match: A0A835YV69_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV69_9STRA) HSP 1 Score: 199 bits (506), Expect = 2.500e-56 Identity = 115/268 (42.91%), Postives = 163/268 (60.82%), Query Frame = 1 Query: 904 LYAEMERNLMSRMHAQDKNRFRAVGLSSVLILIWVLSMFGTEIRRYFASQTAEVARETLKVEALQVQTQELATALVQALLNDQEVVRAGALFLREASANPETQAALVSLALYVLQHPDTRAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIKTQQFRQGASELVVALGQSQ------EVYGAVVDLASRVIQDPKVQATLSTVLSASSREVLQDQVVFDHSKVFVAQVMGDDAVQRSGGDALWSSVQYALQTRLFKATGICLLAAGS 1689
+Y++ME LM+RM +K RFR + +VL +IWV + FG EIR + QTAEVARETLK EA+Q+QTQELA A+V LLND +V+ A ++FL++A+++P+TQAA+VSLA +VLQHPDT E ++K ++ +L + VY A +D+ SR+I +P+V+ +S +++ S VL D V H K FVA+VMGDD VQ++GGDALW SVQYAL+ RL G+ + AG+
Sbjct: 1 MYSDMEAKLMARMRTHNKGRFRTAAIVTVLTVIWVFNTFGKEIRVWMGGQTAEVARETLKHEAIQIQTQELAMAVVNTLLNDPKVLAATSVFLQDAASDPDTQAAIVSLASHVLQHPDTLQEVHALAQKLIAQ-----------------LVKEAAATLRTCTVLASLKHTHLKCILDHVYEAFLDMVSRIIAEPRVKEQVSLIMADGSHHVLADADVLQHGKDFVAEVMGDDQVQKTGGDALWHSVQYALRWRLMVVAGLSMACAGA 251
BLAST of mRNA_E-siliculosus-1a_M_contig97.17642.1 vs. uniprot
Match: A0A7S3UXV6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UXV6_HETAK) HSP 1 Score: 179 bits (455), Expect = 1.600e-47 Identity = 98/253 (38.74%), Postives = 147/253 (58.10%), Query Frame = 1 Query: 919 ERNLMSRMHAQDKNRFRAVGLSSVLILIWVLSMFGTEIRRYFASQTAEVARETLKVEALQVQTQELATALVQALLNDQEVVRAGALFLREASANPETQAALVSLALYVLQHPDTRAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIKTQQFRQGASELVVALGQSQEVYGAVVDLASRVIQDPKVQATLSTVLSASSREVLQDQVVFDHSKVFVAQVMGDDAVQRSGGDALWSSVQYALQTRLFKATGICLL 1677
E LM R+H ++NRFR L ++L W+ + FG EI +F QTAEVA+ETL+ E+LQ+QTQELATA+VQ LLND +V++ +FL+EA+ N ET+ ALV L L++LQH +T E V+K ++ ++ AS+LV L ++++VY AVV L +RV+ +S VL D V HSK F+++V D+ +Q++G ALW +V+Y++Q L + G L+
Sbjct: 113 EEYLMKRIHIGNQNRFRTAVLGTILTCCWLTATFGQEIYSFFTKQTAEVAKETLRQESLQIQTQELATAIVQTLLNDDQVMKNATIFLKEAAGNEETKKALVGLGLFILQHEETMREAVELGRKIVVQLSKEPSVINNIALLMLEVLKDKRVQESASDLVADLSENEQVYEAVVQLTNRVLSXXXXXXXXXXXXXEASISVLSDDTVISHSKEFISEVANDEEIQKAGSKALWHTVKYSVQPHLKRIVGAALV 365
BLAST of mRNA_E-siliculosus-1a_M_contig97.17642.1 vs. uniprot
Match: A0A7R9YAX6_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YAX6_9STRA) HSP 1 Score: 144 bits (363), Expect = 4.280e-35 Identity = 92/262 (35.11%), Postives = 144/262 (54.96%), Query Frame = 1 Query: 880 DLPHQVSELYAEMERNLMSRMHAQDKNRFRAVGLSSVLILIWVLSMFGTEIRRYFASQTAEVARETLKVEALQVQTQELATALVQALLNDQEVVRAGALFLREASANPETQAALVSLALYVLQHPDTRAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIKTQQFRQGASELVVALGQSQEVYGAVVDLASRVIQDPKVQATLSTVLSASSREVLQDQVVFDHSKVFVAQVMGDDAVQRSGGDALWSSVQYALQTRLFKATG 1665
++ +V + Y E+E LM A + + R ++ L+ +WV S+FG IRR+F+ QTAEVARETL+ E LQ +TQELA A+V+ +LND++++ F+R + + + ALV LAL++LQH DT AE + R +L+V L Q+QEV AV+ L + V +P ++ L +L A++ V+ D+ V +K FV +V+ D VQR+GG +L +SV Y+L+ L + G
Sbjct: 43 EVSQRVVDNYKEIEARLMRTTRASNVEQIRLALTAAALVTVWVFSVFGRHIRRFFSKQTAEVARETLENEELQARTQELAAAVVRTILNDEDILVKITAFIRNTADDDNLRDALVQLALHILQHDDTLAEVKVLGLKLVDYILKDETVTIEAGALVQRTWNLPEVRTATLDLLVDLLQTQEVNQAVLALLTSVADEPVFKSKLQELLIAATHGVVIDKGVHTAAKDFVHEVVTDTDVQRTGGRSLRASVWYSLEPVLARVAG 304
BLAST of mRNA_E-siliculosus-1a_M_contig97.17642.1 vs. uniprot
Match: A0A7S3HRC0_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HRC0_9STRA) HSP 1 Score: 106 bits (264), Expect = 9.560e-23 Identity = 77/183 (42.08%), Postives = 114/183 (62.30%), Query Frame = 1 Query: 1129 VQALLNDQEVVRAGALFLREASANPETQAALVSLALYVLQHPDTRAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIKTQQFRQGASELVVALGQSQEVYGAVVDLASRVIQDPKVQATLSTVLSASSREVLQDQVVFDHSKVFVAQVMGDDAVQRSGGDALWSSVQYALQTRLFKATGICLL 1677
VQ +L D+++ A FL+EAS PETQ AL+ L +++LQH DT E XXXXXXXXXXXXXXXXX V++ R L+ L Q +EV+ +V L ++ +PKV + S +L+ S +++ D + S+ F+A V+GDD +Q+ GG ALW+S+QYAL+ + + TG+ L+
Sbjct: 1 VQTILEDKDITNHAATFLKEASTAPETQQALLKLTMHILQHKDTLEELTKMSQKLXXXXXXXXXXXXXXXXXFTKVLQDPALRTAMVTLIGDLCQDKEVFESVSGLVVQLAGEPKVTESTSALLTGSISDLMHDDEISHQSRQFIADVVGDDLLQKEGGYALWNSIQYALKPGIIRVTGVTLV 183
BLAST of mRNA_E-siliculosus-1a_M_contig97.17642.1 vs. uniprot
Match: A0A485KNS4_9STRA (Aste57867_9680 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KNS4_9STRA) HSP 1 Score: 103 bits (256), Expect = 2.590e-20 Identity = 76/252 (30.16%), Postives = 117/252 (46.43%), Query Frame = 1 Query: 880 DLPHQVSELYAEMERNLMSR-MHAQDKNRFRAVGLSSVLILIWVLSMFGTEIRRYFASQTAEVARETLKVEALQVQTQELATALVQALLNDQEVVRAGALFLREASANPETQAALVSLALYVLQHPDTRAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIKTQQFRQGASELVVALGQSQEVYGAVVDLASRVIQDPKVQATLSTVLSASSREVLQDQVVFDHSKVFVAQVMGDDAVQRSGGDALWSSVQY 1632
+ P VS + L M+ Q KN + GL + + ++ + FG E+R TAEVA ETL+ E+LQ+QTQELA+ +VQ +LND +V+ FL++ A T ALV L VL P T A I R+ L+ L Q + + L + +VQ +++T ++ S +V+ +Q V DH+K F+ V+ D+ VQ G+ALW ++ Y
Sbjct: 63 EAPPTVSREIVHASQQLQQLYMNMQGKN-WNMWGLGIIGVGVFXMIAFGPEMRSKMTKTTAEVATETLQNESLQIQTQELASQIVQTVLNDPKVLDQACHFLKKLFAMEMTHVALVQLTSGVLNDPQTLAHVTKLAKQLLFNLFQDPTTLRQFVDLIKTAIVDPNTRESVIALLDQLMQDEATRARLTKLMAWTFVQDQVQGSVTTTITKSVHQVMSNQDVQDHAKEFIGGVVRDETVQTQSGEALWKTLLY 313
BLAST of mRNA_E-siliculosus-1a_M_contig97.17642.1 vs. uniprot
Match: A0A024UV14_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UV14_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 1.420e-16 Identity = 72/249 (28.92%), Postives = 111/249 (44.58%), Query Frame = 1 Query: 892 QVSELYAEMERNLMSRMHAQDKNRFRAVGLSSVLILIWVLSMFGTEIRRYFASQTAEVARETLKVEALQVQTQELATALVQALLNDQEVVRAGALFLREASANPETQAALVSLALYVLQHPDTRAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIKTQQFRQGASELVVALGQSQEVYGAVVDLASRVIQDPKVQATLSTVLSASSREVLQDQVVFDHSKVFVAQVMGDDAVQRSGGDALWSSVQYAL 1638
Q +LY M QDK + GL + + + FG E+R TAEVA ETL+ E+LQ+QTQELA+ +VQ +LND +V+ + FL++ A T+ A+V L T A I RQ L+ L + + + L + P VQ ++S +++S V+ ++ V DH+K F+ V+ D+ VQ G+ALW ++ Y L
Sbjct: 65 QFQQLYLRM----------QDKP-WNMWGLGLLGVXXXXVIAFGPEMRSKMTKTTAEVATETLQNESLQIQTQELASQIVQTVLNDPKVLDQASQFLQKLMAMDATRGAMVQLXXXXXXXXXTLAHVTKLSKQILFNLFQDPATLRQFVDLIKAAIVDPHTRQNVILLLDQLMKDEPTRARLTALLAWTFVQPPVQHSVSATMTSSVHNVMSNKDVQDHAKEFIGGVVRDETVQTQSGEALWKTLMYVL 302
BLAST of mRNA_E-siliculosus-1a_M_contig97.17642.1 vs. uniprot
Match: A0A1V9YHQ0_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YHQ0_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 3.460e-16 Identity = 70/241 (29.05%), Postives = 113/241 (46.89%), Query Frame = 1 Query: 928 LMSRMHAQ-DKNRFRAVGLSSVLILIWVLSMFGTEIRRYFASQTAEVARETLKVEALQVQTQELATALVQALLNDQEVVRAGALFLREASANPETQAALVSLALYVLQHPDTRAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIKTQQFRQGASELVVALGQSQEVYGAVVDLASRVIQDPKVQATLSTVLSASSREVLQDQVVFDHSKVFVAQVMGDDAVQRSGGDALWSSVQYALQTR 1647
L+SR A +K + A+GL + ++ F E++ + TAEVA ETL+ E LQ+QTQELA+ +VQ +LND +V+ F++ S + TQ ALV+L VL +P T A+ XXXX + + L S V+ +++ L+ S +V+ + + DH+KVF+ V+ D+ VQ G+A+W+++ Y R
Sbjct: 7 LLSRHKASWNKWGYVALGLGGLCLIA-----FAPELKNSMSKTTAEVASETLQNENLQIQTQELASQIVQTVLNDPKVLNQALQFIKNLSESEITQTALVNLTSNVLNNPQTMAQVTKLSKQLLLNLLQDPTTLRQFVNXXXXXXXXXXXXXXXXXXXXXXXXXENTKARLAHLMSHTFVQEPVKKSVTNTLTNSLHDVMSNPDIQDHAKVFIGGVVRDETVQTQSGEAIWNTMSYVFTPR 242
BLAST of mRNA_E-siliculosus-1a_M_contig97.17642.1 vs. uniprot
Match: A0A482RS36_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RS36_9ARCH) HSP 1 Score: 76.3 bits (186), Expect = 1.900e-13 Identity = 42/74 (56.76%), Postives = 52/74 (70.27%), Query Frame = 1 Query: 1474 VQATLSTVLSASSREVLQDQVVFDHSKVFVAQVMGDDAVQRSGGDALWSSVQYALQTRLFKATGICLLAAGSAV 1695
+QAT VL S+ EVLQD+ V + S++FVA V+GDD +QR GG ALW SV YALQ L + TGICLL A A+
Sbjct: 9 LQATYE-VLQGSASEVLQDRQVQEQSRLFVANVVGDDVLQREGGTALWRSVLYALQPGLIRMTGICLLGASVAL 81 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig97.17642.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig97.17642.1 >prot_E-siliculosus-1a_M_contig97.17642.1 ID=prot_E-siliculosus-1a_M_contig97.17642.1|Name=mRNA_E-siliculosus-1a_M_contig97.17642.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=565bp PPTAPSTHSIASGGVLQSAAGTMRRVRQTANVVANPIGRTLARRKSCPHNback to top mRNA from alignment at E-siliculosus-1a_M_contig97:119757..130902+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig97.17642.1 ID=mRNA_E-siliculosus-1a_M_contig97.17642.1|Name=mRNA_E-siliculosus-1a_M_contig97.17642.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=11146bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig97:119757..130902+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig97:119757..130902+ >mRNA_E-siliculosus-1a_M_contig97.17642.1 ID=mRNA_E-siliculosus-1a_M_contig97.17642.1|Name=mRNA_E-siliculosus-1a_M_contig97.17642.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=3390bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig97:119757..130902+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |