mRNA_E-siliculosus-1a_M_contig966.17630.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig966.17630.1
Unique NamemRNA_E-siliculosus-1a_M_contig966.17630.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig966.17630.1 vs. uniprot
Match: D1J708_ECTSI (Uncharacterized protein ycf40 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J708_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 1.350e-26
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 1
Query:    7 SDLLEFFNHQKELVIIEYNGKIYNNLASRPQYLREKDKIEIITIVGGG 150
            SDLLEFFNHQKELVIIEYNGKIYNNLASRPQYLREKDKIEIITIVGGG
Sbjct:   28 SDLLEFFNHQKELVIIEYNGKIYNNLASRPQYLREKDKIEIITIVGGG 75          
BLAST of mRNA_E-siliculosus-1a_M_contig966.17630.1 vs. uniprot
Match: A0A5B9RD79_9PHAE (Ycf40 protein n=14 Tax=Laminariales TaxID=2886 RepID=A0A5B9RD79_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 2.840e-19
Identity = 39/47 (82.98%), Postives = 42/47 (89.36%), Query Frame = 1
Query:   10 DLLEFFNHQKELVIIEYNGKIYNNLASRPQYLREKDKIEIITIVGGG 150
            DLLEFFNHQKELVII++NGKI+N L    QYLREKDKIEIITIVGGG
Sbjct:   29 DLLEFFNHQKELVIIQHNGKIHNYLNKNSQYLREKDKIEIITIVGGG 75          
BLAST of mRNA_E-siliculosus-1a_M_contig966.17630.1 vs. uniprot
Match: A0A8F0JZ90_9PHAE (Uncharacterized protein n=1 Tax=Egregia menziesii TaxID=105409 RepID=A0A8F0JZ90_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 2.840e-19
Identity = 38/47 (80.85%), Postives = 43/47 (91.49%), Query Frame = 1
Query:   10 DLLEFFNHQKELVIIEYNGKIYNNLASRPQYLREKDKIEIITIVGGG 150
            DLLEFFN+QKEL+IIE+NGKI+N L   PQYLR+KDKIEIITIVGGG
Sbjct:   29 DLLEFFNYQKELIIIEHNGKIHNYLNKTPQYLRQKDKIEIITIVGGG 75          
BLAST of mRNA_E-siliculosus-1a_M_contig966.17630.1 vs. uniprot
Match: A0A1I9LW05_9PHAE (Uncharacterized protein n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LW05_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 8.140e-19
Identity = 37/47 (78.72%), Postives = 43/47 (91.49%), Query Frame = 1
Query:   10 DLLEFFNHQKELVIIEYNGKIYNNLASRPQYLREKDKIEIITIVGGG 150
            DLL+FFN+QKEL+IIEYNGKIYNN  +R QYL++KD IEIITIVGGG
Sbjct:   29 DLLKFFNYQKELIIIEYNGKIYNNSITRTQYLKQKDIIEIITIVGGG 75          
BLAST of mRNA_E-siliculosus-1a_M_contig966.17630.1 vs. uniprot
Match: A0A0S0GBR2_COSCS (Uncharacterized protein n=4 Tax=Laminariales TaxID=2886 RepID=A0A0S0GBR2_COSCS)

HSP 1 Score: 79.7 bits (195), Expect = 1.640e-18
Identity = 36/47 (76.60%), Postives = 42/47 (89.36%), Query Frame = 1
Query:   10 DLLEFFNHQKELVIIEYNGKIYNNLASRPQYLREKDKIEIITIVGGG 150
            DL+EFFNHQK+LVIIE+NGKI N L   PQY+R+KDKIE+ITIVGGG
Sbjct:   29 DLIEFFNHQKDLVIIEHNGKIQNYLNKTPQYVRQKDKIEVITIVGGG 75          
BLAST of mRNA_E-siliculosus-1a_M_contig966.17630.1 vs. uniprot
Match: A0A516ICZ3_9PHAE (Uncharacterized protein n=2 Tax=Lessonia TaxID=105411 RepID=A0A516ICZ3_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 6.690e-18
Identity = 38/47 (80.85%), Postives = 42/47 (89.36%), Query Frame = 1
Query:   10 DLLEFFNHQKELVIIEYNGKIYNNLASRPQYLREKDKIEIITIVGGG 150
            DLLEFFN+QKELVII++NGKI+N L    QYLREKDKIEIITIVGGG
Sbjct:   29 DLLEFFNYQKELVIIQHNGKIHNYLNKNFQYLREKDKIEIITIVGGG 75          
BLAST of mRNA_E-siliculosus-1a_M_contig966.17630.1 vs. uniprot
Match: A0A7T8JJY9_SCYLO (Ycf40 n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A7T8JJY9_SCYLO)

HSP 1 Score: 77.8 bits (190), Expect = 1.080e-17
Identity = 39/49 (79.59%), Postives = 43/49 (87.76%), Query Frame = 1
Query:   10 DLLEFFNHQKELVIIEYNGKIYNNLA--SRPQYLREKDKIEIITIVGGG 150
            DLLEFFN+QKELVIIEYNGKIYNNL   +R  YL++KD IEIITIVGGG
Sbjct:   32 DLLEFFNYQKELVIIEYNGKIYNNLELHNRLSYLKKKDNIEIITIVGGG 80          
BLAST of mRNA_E-siliculosus-1a_M_contig966.17630.1 vs. uniprot
Match: A0A0R6LV33_UNDPI (Uncharacterized protein n=1 Tax=Undaria pinnatifida TaxID=74381 RepID=A0A0R6LV33_UNDPI)

HSP 1 Score: 77.4 bits (189), Expect = 1.350e-17
Identity = 34/48 (70.83%), Postives = 44/48 (91.67%), Query Frame = 1
Query:    7 SDLLEFFNHQKELVIIEYNGKIYNNLASRPQYLREKDKIEIITIVGGG 150
            SD+LEFFN+QKELVII++NGKI+N+L    QY+++KDK+EIITIVGGG
Sbjct:   28 SDILEFFNYQKELVIIQHNGKIHNDLNKNSQYVKQKDKVEIITIVGGG 75          
BLAST of mRNA_E-siliculosus-1a_M_contig966.17630.1 vs. uniprot
Match: A0A8F0JZ63_9PHAE (Uncharacterized protein n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0JZ63_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 1.920e-17
Identity = 33/47 (70.21%), Postives = 42/47 (89.36%), Query Frame = 1
Query:   10 DLLEFFNHQKELVIIEYNGKIYNNLASRPQYLREKDKIEIITIVGGG 150
            D+LEFFNH+++L+IIE NGKI N L ++PQY ++KDKIEIITIVGGG
Sbjct:   29 DILEFFNHERQLIIIEQNGKIQNKLNNKPQYFKDKDKIEIITIVGGG 75          
BLAST of mRNA_E-siliculosus-1a_M_contig966.17630.1 vs. uniprot
Match: A0A8E8PDZ4_9PHAE (ThiS n=4 Tax=Alariaceae TaxID=2887 RepID=A0A8E8PDZ4_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 1.920e-17
Identity = 34/47 (72.34%), Postives = 43/47 (91.49%), Query Frame = 1
Query:   10 DLLEFFNHQKELVIIEYNGKIYNNLASRPQYLREKDKIEIITIVGGG 150
            DLLEFFNHQKELVII++NGKI+N+L    +Y+++KDKIE+ITIVGGG
Sbjct:   29 DLLEFFNHQKELVIIQHNGKIHNDLNKTQKYVKQKDKIEVITIVGGG 75          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig966.17630.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J708_ECTSI1.350e-26100.00Uncharacterized protein ycf40 n=1 Tax=Ectocarpus s... [more]
A0A5B9RD79_9PHAE2.840e-1982.98Ycf40 protein n=14 Tax=Laminariales TaxID=2886 Rep... [more]
A0A8F0JZ90_9PHAE2.840e-1980.85Uncharacterized protein n=1 Tax=Egregia menziesii ... [more]
A0A1I9LW05_9PHAE8.140e-1978.72Uncharacterized protein n=1 Tax=Pleurocladia lacus... [more]
A0A0S0GBR2_COSCS1.640e-1876.60Uncharacterized protein n=4 Tax=Laminariales TaxID... [more]
A0A516ICZ3_9PHAE6.690e-1880.85Uncharacterized protein n=2 Tax=Lessonia TaxID=105... [more]
A0A7T8JJY9_SCYLO1.080e-1779.59Ycf40 n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0... [more]
A0A0R6LV33_UNDPI1.350e-1770.83Uncharacterized protein n=1 Tax=Undaria pinnatifid... [more]
A0A8F0JZ63_9PHAE1.920e-1770.21Uncharacterized protein n=1 Tax=Chorda asiatica Ta... [more]
A0A8E8PDZ4_9PHAE1.920e-1772.34ThiS n=4 Tax=Alariaceae TaxID=2887 RepID=A0A8E8PDZ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig966contigE-siliculosus-1a_M_contig966:1444..1596 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size153
Model size153
Exons1
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936541.574638-CDS-E-siliculosus-1a_M_contig966:1443..15961622936541.574638-CDS-E-siliculosus-1a_M_contig966:1443..1596Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig966 1444..1596 +
1696251122.810005-CDS-E-siliculosus-1a_M_contig966:1443..15961696251122.810005-CDS-E-siliculosus-1a_M_contig966:1443..1596Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig966 1444..1596 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig966.17630.1prot_E-siliculosus-1a_M_contig966.17630.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig966 1444..1596 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig966.17630.1

>prot_E-siliculosus-1a_M_contig966.17630.1 ID=prot_E-siliculosus-1a_M_contig966.17630.1|Name=mRNA_E-siliculosus-1a_M_contig966.17630.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=51bp
MSSDLLEFFNHQKELVIIEYNGKIYNNLASRPQYLREKDKIEIITIVGGG
*
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mRNA from alignment at E-siliculosus-1a_M_contig966:1444..1596+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig966.17630.1 ID=mRNA_E-siliculosus-1a_M_contig966.17630.1|Name=mRNA_E-siliculosus-1a_M_contig966.17630.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=153bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig966:1444..1596+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGAGCAGTGATTTACTAGAATTCTTTAATCATCAAAAAGAACTTGTAAT AATTGAATATAATGGTAAAATCTATAATAATTTAGCTAGTCGACCTCAAT ATTTAAGGGAAAAAGATAAAATAGAAATTATTACAATTGTAGGTGGCGGT TAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig966:1444..1596+

>mRNA_E-siliculosus-1a_M_contig966.17630.1 ID=mRNA_E-siliculosus-1a_M_contig966.17630.1|Name=mRNA_E-siliculosus-1a_M_contig966.17630.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=306bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig966:1444..1596+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGAGCAGTGATTTACTAGAATTCTTTAATCATCAAAAAGAACTTGTAAT
AATTGAATATAATGGTAAAATCTATAATAATTTAGCTAGTCGACCTCAAT
ATTTAAGGGAAAAAGATAAAATAGAAATTATTACAATTGTAGGTGGCGGT
TAAATGAGCAGTGATTTACTAGAATTCTTTAATCATCAAAAAGAACTTGT
AATAATTGAATATAATGGTAAAATCTATAATAATTTAGCTAGTCGACCTC
AATATTTAAGGGAAAAAGATAAAATAGAAATTATTACAATTGTAGGTGGC
GGTTAA
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