mRNA_E-siliculosus-1a_M_contig962.17628.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig962.17628.1
Unique NamemRNA_E-siliculosus-1a_M_contig962.17628.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig962.17628.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig962contigE-siliculosus-1a_M_contig962:1596..1914 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size318
Model size321
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936541.501663-CDS-E-siliculosus-1a_M_contig962:1595..19131622936541.501663-CDS-E-siliculosus-1a_M_contig962:1595..1913Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig962 1596..1913 +
1696251122.785022-CDS-E-siliculosus-1a_M_contig962:1595..19131696251122.785022-CDS-E-siliculosus-1a_M_contig962:1595..1913Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig962 1596..1913 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig962.17628.1prot_E-siliculosus-1a_M_contig962.17628.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig962 1596..1913 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig962.17628.1

>prot_E-siliculosus-1a_M_contig962.17628.1 ID=prot_E-siliculosus-1a_M_contig962.17628.1|Name=mRNA_E-siliculosus-1a_M_contig962.17628.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=106bp
LGGFCRGVSHVVLSLYEDLVTSRRGGAIDTERVKFWPCTFFLHWSCVSQM
VYNQDFTYAAIVKLNHPCPELSTAPQRVSGLPGLLFTVSPSMSKLVSEKK
KRGLSV
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mRNA from alignment at E-siliculosus-1a_M_contig962:1596..1914+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig962.17628.1 ID=mRNA_E-siliculosus-1a_M_contig962.17628.1|Name=mRNA_E-siliculosus-1a_M_contig962.17628.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=319bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig962:1596..1914+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TTAGGAGGTTTCTGCAGAGGGGTATCTCACGTTGTGCTGTCGTTGTATGA
GGATCTCGTCACTTCTCGACGTGGCGGTGCGATTGACACTGAAAGAGTCA
AGTTCTGGCCTTGCACCTTCTTTCTGCATTGGTCCTGCGTCAGTCAAATG
GTGTACAACCAGGACTTTACGTACGCGGCCATAGTGAAATTGAACCATCC
CTGTCCGGAACTTTCTACGGCGCCCCAAAGGGTATCCGGTCTTCCGGGGT
TACTGTTTACTGTTTCTCCTTCGATGTCAAAACTTGTATCTGAAAAAAAA
AAGCGAGGGTTGTCGGTGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig962:1596..1914+

>mRNA_E-siliculosus-1a_M_contig962.17628.1 ID=mRNA_E-siliculosus-1a_M_contig962.17628.1|Name=mRNA_E-siliculosus-1a_M_contig962.17628.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=636bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig962:1596..1914+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TTAGGAGGTTTCTGCAGAGGGGTATCTCACGTTGTGCTGTCGTTGTATGA
GGATCTCGTCACTTCTCGACGTGGCGGTGCGATTGACACTGAAAGAGTCA
AGTTCTGGCCTTGCACCTTCTTTCTGCATTGGTCCTGCGTCAGTCAAATG
GTGTACAACCAGGACTTTACGTACGCGGCCATAGTGAAATTGAACCATCC
CTGTCCGGAACTTTCTACGGCGCCCCAAAGGGTATCCGGTCTTCCGGGGT
TACTGTTTACTGTTTCTCCTTCGATGTCAAAACTTGTATCTGAAAAAAAA
AAGCGAGGGTTGTCGGTGTTAGGAGGTTTCTGCAGAGGGGTATCTCACGT
TGTGCTGTCGTTGTATGAGGATCTCGTCACTTCTCGACGTGGCGGTGCGA
TTGACACTGAAAGAGTCAAGTTCTGGCCTTGCACCTTCTTTCTGCATTGG
TCCTGCGTCAGTCAAATGGTGTACAACCAGGACTTTACGTACGCGGCCAT
AGTGAAATTGAACCATCCCTGTCCGGAACTTTCTACGGCGCCCCAAAGGG
TATCCGGTCTTCCGGGGTTACTGTTTACTGTTTCTCCTTCGATGTCAAAA
CTTGTATCTGAAAAAAAAAAGCGAGGGTTGTCGGTG
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