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Homology
BLAST of mRNA_E-siliculosus-1a_M_contig96.17625.1 vs. uniprot
Match: Q6XM79_9PHYC (FirrV-1-A8 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM79_9PHYC) HSP 1 Score: 101 bits (252), Expect = 1.210e-24 Identity = 56/137 (40.88%), Postives = 85/137 (62.04%), Query Frame = 1 Query: 16 RSDIERQLKQLPTSFTSTEITGMYHNLRKDIEKLKTEGVPQAAAERMLHSRHKLLAFSYPTLFFKVVKGEMSEHIFTTSMTIKQRLDSGDTSQEEARDLIVDSAKKHIGGVAPRPARPDGSQSGGSAQEIVIHAQVD 426
+S ++R++ LP SFTS EI M+ +L KD+E + G P + ++ +RHK LAFSYP+LF+K +KG+M H+ + + IK LD+G SQ+ AR+++VD AKK I + + + SGG+ Q I QVD
Sbjct: 2 QSYVKREISNLPGSFTSEEIDRMHSDLIKDMEAYR--GHPHF--DTVMCARHKTLAFSYPSLFYKTIKGDMEPHLLRSILHIKHLLDTGKISQDRAREMVVDGAKKQIE-ASQKTKNKSAAASGGAEQAFAIKCQVD 133
BLAST of mRNA_E-siliculosus-1a_M_contig96.17625.1 vs. uniprot
Match: B5LWH1_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWH1_9PHYC) HSP 1 Score: 100 bits (248), Expect = 9.340e-24 Identity = 56/148 (37.84%), Postives = 91/148 (61.49%), Query Frame = 1 Query: 13 QRSDIERQLKQLPTSFTSTEITGMYHNLRKDIEKLKTEGVPQAAAERMLHSRHKLLAFSYPTLFFKVVKGEMSEHIFTTSMTIKQRLDSGDTSQEEARDLIVDSAKKHIGGVAPRPARP--DGSQSGGSAQEIVIHAQVDANCDLKVS 450
QR+ +ER+L++LPTSF+S EI M ++L+ D+ G+ + R L+++HK+LA++YP+LFFK+V+GE HIF + + IK LD G+ + E A+ L+V AK+ + + + +P D S SG E+ VD D K++
Sbjct: 3 QRAAVERELRKLPTSFSSAEIRAMCNDLKADV------GLGLLSESR-LYAKHKVLAYAYPSLFFKIVRGEFDLHIFESLLKIKSSLDRGEITDERAKQLVVLGAKEQLASGSAKKMKPKSDSSTSG----ELTFECVVDEKGDFKMT 139
BLAST of mRNA_E-siliculosus-1a_M_contig96.17625.1 vs. uniprot
Match: D8LPF6_ECTSI (EsV-1-130 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPF6_ECTSI) HSP 1 Score: 96.3 bits (238), Expect = 1.580e-22 Identity = 52/129 (40.31%), Postives = 77/129 (59.69%), Query Frame = 1 Query: 46 LPTSFTSTEITGMYHNLRKDIE--KLKTEGVPQAAAERMLHSRHKLLAFSYPTLFFKVVKGEMSEHIFTTSMTIKQRLDSGDTSQEEARDLIVDSAKKHIGGVAPRPARPDGSQSGGSAQEIVIHAQVD 426
LP SF S+ I+ MY L +DI+ K K+ G+ Q E +LH RHK LAFSYP+LFFK+V+GE+ + + +++KQRLD D S ++AR+ ++D AK I +P +G QE+ + D
Sbjct: 18 LPESFVSSTISEMYAALERDIQVIKSKSPGMTQKQMEIVLHQRHKKLAFSYPSLFFKIVRGEVDPAMLASLLSLKQRLDERDVSLDDARNRVIDYAKIQIEETRGKPRARKAKPAGTVVQELSFKCKPD 146
BLAST of mRNA_E-siliculosus-1a_M_contig96.17625.1 vs. uniprot
Match: Q8QNE9_ESV1K (EsV-1-130 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNE9_ESV1K) HSP 1 Score: 94.4 bits (233), Expect = 8.460e-22 Identity = 53/133 (39.85%), Postives = 78/133 (58.65%), Query Frame = 1 Query: 16 RSDIERQLKQ-LPTSFTSTEITGMYHNLRKDIEKL--KTEGVPQAAAERMLHSRHKLLAFSYPTLFFKVVKGEMSEHIFTTSMTIKQRLDSGDTSQEEARDLIVDSAKKHIGGVAPRPARPDGSQSGGSAQEI 405
R ++E ++ LP SF ++ I+ MY L +DI + K+ G+ Q E MLH RHK LAFSYP LFFK+V+GE+ + T+ +++KQ LD D S E AR+ ++D AK I +P +G QE+
Sbjct: 5 RQEVEEYIENNLPESFVASTISEMYAALERDIRLIRSKSPGMDQKQMEMMLHQRHKKLAFSYPGLFFKIVRGEVDPAMLTSLLSLKQSLDERDVSLEVARNRVIDYAKSQIEETQGKPRVRKAKPTGTVVQEL 137
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 459 |
| Model size | 459 |
| Exons | 1 |
| Hectar predicted targeting category | other localisation |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936541.4639196-CDS-E-siliculosus-1a_M_contig96:582975..583434 | 1622936541.4639196-CDS-E-siliculosus-1a_M_contig96:582975..583434 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig96 582976..583434 + |
| 1696251122.7742503-CDS-E-siliculosus-1a_M_contig96:582975..583434 | 1696251122.7742503-CDS-E-siliculosus-1a_M_contig96:582975..583434 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig96 582976..583434 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig96.17625.1 >prot_E-siliculosus-1a_M_contig96.17625.1 ID=prot_E-siliculosus-1a_M_contig96.17625.1|Name=mRNA_E-siliculosus-1a_M_contig96.17625.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=153bp
MPAGQRSDIERQLKQLPTSFTSTEITGMYHNLRKDIEKLKTEGVPQAAAE
RMLHSRHKLLAFSYPTLFFKVVKGEMSEHIFTTSMTIKQRLDSGDTSQEE
ARDLIVDSAKKHIGGVAPRPARPDGSQSGGSAQEIVIHAQVDANCDLKVS
PN* back to topmRNA from alignment at E-siliculosus-1a_M_contig96:582976..583434+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_M_contig96.17625.1 ID=mRNA_E-siliculosus-1a_M_contig96.17625.1|Name=mRNA_E-siliculosus-1a_M_contig96.17625.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=459bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:582976..583434+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCCTGCAGGACAACGGTCAGACATCGAACGCCAACTGAAACAATTACC
AACCTCCTTCACCTCCACGGAGATAACGGGCATGTATCACAACCTCCGAA
AAGACATCGAAAAACTGAAGACGGAAGGGGTCCCACAAGCAGCTGCAGAA
CGTATGCTTCACAGCAGGCACAAGTTGCTGGCTTTCTCCTACCCAACACT
GTTTTTCAAGGTGGTGAAAGGTGAAATGTCTGAGCATATTTTCACTACTT
CCATGACAATAAAGCAGCGCTTGGACAGCGGAGACACTTCACAGGAGGAA
GCAAGGGACCTGATCGTCGATAGTGCCAAGAAGCACATAGGGGGTGTAGC
GCCACGGCCGGCAAGACCCGATGGTTCACAGTCGGGCGGGTCCGCGCAGG
AGATCGTTATCCACGCGCAGGTTGACGCGAACTGCGACCTGAAGGTGTCC
CCGAATTGA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:582976..583434+ >mRNA_E-siliculosus-1a_M_contig96.17625.1 ID=mRNA_E-siliculosus-1a_M_contig96.17625.1|Name=mRNA_E-siliculosus-1a_M_contig96.17625.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=918bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:582976..583434+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCCTGCAGGACAACGGTCAGACATCGAACGCCAACTGAAACAATTACC
AACCTCCTTCACCTCCACGGAGATAACGGGCATGTATCACAACCTCCGAA
AAGACATCGAAAAACTGAAGACGGAAGGGGTCCCACAAGCAGCTGCAGAA
CGTATGCTTCACAGCAGGCACAAGTTGCTGGCTTTCTCCTACCCAACACT
GTTTTTCAAGGTGGTGAAAGGTGAAATGTCTGAGCATATTTTCACTACTT
CCATGACAATAAAGCAGCGCTTGGACAGCGGAGACACTTCACAGGAGGAA
GCAAGGGACCTGATCGTCGATAGTGCCAAGAAGCACATAGGGGGTGTAGC
GCCACGGCCGGCAAGACCCGATGGTTCACAGTCGGGCGGGTCCGCGCAGG
AGATCGTTATCCACGCGCAGGTTGACGCGAACTGCGACCTGAAGGTGTCC
CCGAATTGAATGCCTGCAGGACAACGGTCAGACATCGAACGCCAACTGAA
ACAATTACCAACCTCCTTCACCTCCACGGAGATAACGGGCATGTATCACA
ACCTCCGAAAAGACATCGAAAAACTGAAGACGGAAGGGGTCCCACAAGCA
GCTGCAGAACGTATGCTTCACAGCAGGCACAAGTTGCTGGCTTTCTCCTA
CCCAACACTGTTTTTCAAGGTGGTGAAAGGTGAAATGTCTGAGCATATTT
TCACTACTTCCATGACAATAAAGCAGCGCTTGGACAGCGGAGACACTTCA
CAGGAGGAAGCAAGGGACCTGATCGTCGATAGTGCCAAGAAGCACATAGG
GGGTGTAGCGCCACGGCCGGCAAGACCCGATGGTTCACAGTCGGGCGGGT
CCGCGCAGGAGATCGTTATCCACGCGCAGGTTGACGCGAACTGCGACCTG
AAGGTGTCCCCGAATTGA back to top
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