mRNA_E-siliculosus-1a_M_contig96.17625.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig96.17625.1
Unique NamemRNA_E-siliculosus-1a_M_contig96.17625.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig96.17625.1 vs. uniprot
Match: Q6XM79_9PHYC (FirrV-1-A8 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM79_9PHYC)

HSP 1 Score: 101 bits (252), Expect = 1.210e-24
Identity = 56/137 (40.88%), Postives = 85/137 (62.04%), Query Frame = 1 
Query:   16 RSDIERQLKQLPTSFTSTEITGMYHNLRKDIEKLKTEGVPQAAAERMLHSRHKLLAFSYPTLFFKVVKGEMSEHIFTTSMTIKQRLDSGDTSQEEARDLIVDSAKKHIGGVAPRPARPDGSQSGGSAQEIVIHAQVD 426
            +S ++R++  LP SFTS EI  M+ +L KD+E  +  G P    + ++ +RHK LAFSYP+LF+K +KG+M  H+  + + IK  LD+G  SQ+ AR+++VD AKK I   + +      + SGG+ Q   I  QVD
Sbjct:    2 QSYVKREISNLPGSFTSEEIDRMHSDLIKDMEAYR--GHPHF--DTVMCARHKTLAFSYPSLFYKTIKGDMEPHLLRSILHIKHLLDTGKISQDRAREMVVDGAKKQIE-ASQKTKNKSAAASGGAEQAFAIKCQVD 133
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BLAST of mRNA_E-siliculosus-1a_M_contig96.17625.1 vs. uniprot
Match: B5LWH1_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWH1_9PHYC)

HSP 1 Score: 100 bits (248), Expect = 9.340e-24
Identity = 56/148 (37.84%), Postives = 91/148 (61.49%), Query Frame = 1 
Query:   13 QRSDIERQLKQLPTSFTSTEITGMYHNLRKDIEKLKTEGVPQAAAERMLHSRHKLLAFSYPTLFFKVVKGEMSEHIFTTSMTIKQRLDSGDTSQEEARDLIVDSAKKHIGGVAPRPARP--DGSQSGGSAQEIVIHAQVDANCDLKVS 450
            QR+ +ER+L++LPTSF+S EI  M ++L+ D+      G+   +  R L+++HK+LA++YP+LFFK+V+GE   HIF + + IK  LD G+ + E A+ L+V  AK+ +   + +  +P  D S SG    E+     VD   D K++
Sbjct:    3 QRAAVERELRKLPTSFSSAEIRAMCNDLKADV------GLGLLSESR-LYAKHKVLAYAYPSLFFKIVRGEFDLHIFESLLKIKSSLDRGEITDERAKQLVVLGAKEQLASGSAKKMKPKSDSSTSG----ELTFECVVDEKGDFKMT 139
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BLAST of mRNA_E-siliculosus-1a_M_contig96.17625.1 vs. uniprot
Match: D8LPF6_ECTSI (EsV-1-130 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPF6_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 1.580e-22
Identity = 52/129 (40.31%), Postives = 77/129 (59.69%), Query Frame = 1 
Query:   46 LPTSFTSTEITGMYHNLRKDIE--KLKTEGVPQAAAERMLHSRHKLLAFSYPTLFFKVVKGEMSEHIFTTSMTIKQRLDSGDTSQEEARDLIVDSAKKHIGGVAPRPARPDGSQSGGSAQEIVIHAQVD 426
            LP SF S+ I+ MY  L +DI+  K K+ G+ Q   E +LH RHK LAFSYP+LFFK+V+GE+   +  + +++KQRLD  D S ++AR+ ++D AK  I     +P       +G   QE+    + D
Sbjct:   18 LPESFVSSTISEMYAALERDIQVIKSKSPGMTQKQMEIVLHQRHKKLAFSYPSLFFKIVRGEVDPAMLASLLSLKQRLDERDVSLDDARNRVIDYAKIQIEETRGKPRARKAKPAGTVVQELSFKCKPD 146
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BLAST of mRNA_E-siliculosus-1a_M_contig96.17625.1 vs. uniprot
Match: Q8QNE9_ESV1K (EsV-1-130 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNE9_ESV1K)

HSP 1 Score: 94.4 bits (233), Expect = 8.460e-22
Identity = 53/133 (39.85%), Postives = 78/133 (58.65%), Query Frame = 1 
Query:   16 RSDIERQLKQ-LPTSFTSTEITGMYHNLRKDIEKL--KTEGVPQAAAERMLHSRHKLLAFSYPTLFFKVVKGEMSEHIFTTSMTIKQRLDSGDTSQEEARDLIVDSAKKHIGGVAPRPARPDGSQSGGSAQEI 405
            R ++E  ++  LP SF ++ I+ MY  L +DI  +  K+ G+ Q   E MLH RHK LAFSYP LFFK+V+GE+   + T+ +++KQ LD  D S E AR+ ++D AK  I     +P       +G   QE+
Sbjct:    5 RQEVEEYIENNLPESFVASTISEMYAALERDIRLIRSKSPGMDQKQMEMMLHQRHKKLAFSYPGLFFKIVRGEVDPAMLTSLLSLKQSLDERDVSLEVARNRVIDYAKSQIEETQGKPRVRKAKPTGTVVQEL 137
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig96.17625.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Q6XM79_9PHYC1.210e-2440.88FirrV-1-A8 n=1 Tax=Feldmannia irregularis virus a ... [more]
B5LWH1_9PHYC9.340e-2437.84Uncharacterized protein n=1 Tax=Feldmannia species... [more]
D8LPF6_ECTSI1.580e-2240.31EsV-1-130 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
Q8QNE9_ESV1K8.460e-2239.85EsV-1-130 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig96contigE-siliculosus-1a_M_contig96:582976..583434 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size459
Model size459
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936541.4639196-CDS-E-siliculosus-1a_M_contig96:582975..5834341622936541.4639196-CDS-E-siliculosus-1a_M_contig96:582975..583434Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 582976..583434 +
1696251122.7742503-CDS-E-siliculosus-1a_M_contig96:582975..5834341696251122.7742503-CDS-E-siliculosus-1a_M_contig96:582975..583434Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 582976..583434 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig96.17625.1prot_E-siliculosus-1a_M_contig96.17625.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig96 582976..583434 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig96.17625.1

>prot_E-siliculosus-1a_M_contig96.17625.1 ID=prot_E-siliculosus-1a_M_contig96.17625.1|Name=mRNA_E-siliculosus-1a_M_contig96.17625.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=153bp
MPAGQRSDIERQLKQLPTSFTSTEITGMYHNLRKDIEKLKTEGVPQAAAE
RMLHSRHKLLAFSYPTLFFKVVKGEMSEHIFTTSMTIKQRLDSGDTSQEE
ARDLIVDSAKKHIGGVAPRPARPDGSQSGGSAQEIVIHAQVDANCDLKVS
PN*
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mRNA from alignment at E-siliculosus-1a_M_contig96:582976..583434+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig96.17625.1 ID=mRNA_E-siliculosus-1a_M_contig96.17625.1|Name=mRNA_E-siliculosus-1a_M_contig96.17625.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=459bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:582976..583434+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCCTGCAGGACAACGGTCAGACATCGAACGCCAACTGAAACAATTACC
AACCTCCTTCACCTCCACGGAGATAACGGGCATGTATCACAACCTCCGAA
AAGACATCGAAAAACTGAAGACGGAAGGGGTCCCACAAGCAGCTGCAGAA
CGTATGCTTCACAGCAGGCACAAGTTGCTGGCTTTCTCCTACCCAACACT
GTTTTTCAAGGTGGTGAAAGGTGAAATGTCTGAGCATATTTTCACTACTT
CCATGACAATAAAGCAGCGCTTGGACAGCGGAGACACTTCACAGGAGGAA
GCAAGGGACCTGATCGTCGATAGTGCCAAGAAGCACATAGGGGGTGTAGC
GCCACGGCCGGCAAGACCCGATGGTTCACAGTCGGGCGGGTCCGCGCAGG
AGATCGTTATCCACGCGCAGGTTGACGCGAACTGCGACCTGAAGGTGTCC
CCGAATTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:582976..583434+

>mRNA_E-siliculosus-1a_M_contig96.17625.1 ID=mRNA_E-siliculosus-1a_M_contig96.17625.1|Name=mRNA_E-siliculosus-1a_M_contig96.17625.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=918bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:582976..583434+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCCTGCAGGACAACGGTCAGACATCGAACGCCAACTGAAACAATTACC
AACCTCCTTCACCTCCACGGAGATAACGGGCATGTATCACAACCTCCGAA
AAGACATCGAAAAACTGAAGACGGAAGGGGTCCCACAAGCAGCTGCAGAA
CGTATGCTTCACAGCAGGCACAAGTTGCTGGCTTTCTCCTACCCAACACT
GTTTTTCAAGGTGGTGAAAGGTGAAATGTCTGAGCATATTTTCACTACTT
CCATGACAATAAAGCAGCGCTTGGACAGCGGAGACACTTCACAGGAGGAA
GCAAGGGACCTGATCGTCGATAGTGCCAAGAAGCACATAGGGGGTGTAGC
GCCACGGCCGGCAAGACCCGATGGTTCACAGTCGGGCGGGTCCGCGCAGG
AGATCGTTATCCACGCGCAGGTTGACGCGAACTGCGACCTGAAGGTGTCC
CCGAATTGAATGCCTGCAGGACAACGGTCAGACATCGAACGCCAACTGAA
ACAATTACCAACCTCCTTCACCTCCACGGAGATAACGGGCATGTATCACA
ACCTCCGAAAAGACATCGAAAAACTGAAGACGGAAGGGGTCCCACAAGCA
GCTGCAGAACGTATGCTTCACAGCAGGCACAAGTTGCTGGCTTTCTCCTA
CCCAACACTGTTTTTCAAGGTGGTGAAAGGTGAAATGTCTGAGCATATTT
TCACTACTTCCATGACAATAAAGCAGCGCTTGGACAGCGGAGACACTTCA
CAGGAGGAAGCAAGGGACCTGATCGTCGATAGTGCCAAGAAGCACATAGG
GGGTGTAGCGCCACGGCCGGCAAGACCCGATGGTTCACAGTCGGGCGGGT
CCGCGCAGGAGATCGTTATCCACGCGCAGGTTGACGCGAACTGCGACCTG
AAGGTGTCCCCGAATTGA
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