mRNA_E-siliculosus-1a_M_contig96.17623.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig96.17623.1
Unique NamemRNA_E-siliculosus-1a_M_contig96.17623.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig96.17623.1 vs. uniprot
Match: Q8QNB7_ESV1K (EsV-1-168 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNB7_ESV1K)

HSP 1 Score: 250 bits (638), Expect = 3.240e-83
Identity = 117/139 (84.17%), Postives = 132/139 (94.96%), Query Frame = 1
Query:    1 TQNILAKEELSYEECEQFLPLRDGDVVFCPSCYDGDSFRLTWTDGSGNKCRIMGRLSGVDTPEMKGSSDKEKALALRAKERLSDVVAGKFVTIRKPGSEKYGRALCDLQTATLASVSKYMIAEPEICRPYDGGKKVAWD 417
            T+ +LA+EEL+YEECE FLPLRDGDVVFCPSCYDGDSFRLTWTD SG K RIMGRL GVDTPE++GSSDKEKALALRAK+RLSDV++G+FVTIRKPG+EKYGRALCDLQT TLASVS+YMIA+P+ICRPYDGGKKV+WD
Sbjct:   28 TRCVLAEEELTYEECEPFLPLRDGDVVFCPSCYDGDSFRLTWTDRSGYKSRIMGRLLGVDTPEIRGSSDKEKALALRAKQRLSDVISGEFVTIRKPGNEKYGRALCDLQTDTLASVSEYMIADPDICRPYDGGKKVSWD 166          
BLAST of mRNA_E-siliculosus-1a_M_contig96.17623.1 vs. uniprot
Match: D8LPI6_ECTSI (EsV-1-168 (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPI6_ECTSI)

HSP 1 Score: 240 bits (612), Expect = 2.510e-79
Identity = 112/134 (83.58%), Postives = 123/134 (91.79%), Query Frame = 1
Query:   16 AKEELSYEECEQFLPLRDGDVVFCPSCYDGDSFRLTWTDGSGNKCRIMGRLSGVDTPEMKGSSDKEKALALRAKERLSDVVAGKFVTIRKPGSEKYGRALCDLQTATLASVSKYMIAEPEICRPYDGGKKVAWD 417
            A EEL+YEECE FLPLRDGDVVFCPSCYDGDSFRLTW DG G K RIMGRL+GVDTPEM GSSDKEK LALRAK+RLSDV+AG+FVTIR PG+EKYGRALCDLQTA LASVS YM+A+PEICRPYDGG+K++WD
Sbjct:   28 AAEELAYEECEPFLPLRDGDVVFCPSCYDGDSFRLTWIDGLGCKSRIMGRLAGVDTPEMNGSSDKEKVLALRAKQRLSDVIAGEFVTIRTPGNEKYGRALCDLQTAKLASVSDYMLADPEICRPYDGGRKLSWD 161          
BLAST of mRNA_E-siliculosus-1a_M_contig96.17623.1 vs. uniprot
Match: A0A6C0DME7_9ZZZZ (TNase-like domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0DME7_9ZZZZ)

HSP 1 Score: 68.6 bits (166), Expect = 1.030e-11
Identity = 45/129 (34.88%), Postives = 70/129 (54.26%), Query Frame = 1
Query:   28 LSYEECEQFLP-LRDGDVVFCPSCYDGDSFRLT--WTDGSGNKCRIMGRLSGVDTPEMKGSSDKEKALALRAKERLSDVVAGKFVTIRKPGSEKYGRALCDLQTATLASVSKYMIAEPEICRPYDGGKK 405
            + Y +   F+P +  G V+     YDGD+  +     +  G   R   RL G+D+PE+KG + KEK LA+ +++ LS ++ GK V +R    EKYGR L D+    L  ++++M+       PYDGG K
Sbjct:   39 IGYSDTLPFVPPINFGKVI---KVYDGDTITIAARLPNTLGPIYRFSVRLLGIDSPEIKGKTFKEKELAVISRDILSQLIMGKIVYLRNVSMEKYGRILADVYLGDL-HINEWMLKNGYAI-PYDGGTK 162          
BLAST of mRNA_E-siliculosus-1a_M_contig96.17623.1 vs. uniprot
Match: A0A6C0HI73_9ZZZZ (TNase-like domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0HI73_9ZZZZ)

HSP 1 Score: 67.0 bits (162), Expect = 3.360e-11
Identity = 45/132 (34.09%), Postives = 73/132 (55.30%), Query Frame = 1
Query:   28 LSYEECEQFLP-LRDGDVVFCPSCYDGDSF----RLTWTDGSGNKCRIMGRLSGVDTPEMKGSSDKEKALALRAKERLSDVVAGKFVTIRKPGSEKYGRALCDLQTATLASVSKYMIAEPEICRPYDGGKKV 408
            +SY+    F+P +  G V+     YDGD+     RL ++  +    RI  RL+G+DTPE+KG + KEK LA + ++ L   +  K V ++   SEKYGR L D+    +  ++++M+ +    R Y GG K+
Sbjct:   33 ISYDNTVPFVPPVTYGKVI---KVYDGDTITIAARLPYSKSA--IYRIAVRLNGIDTPEIKGQTQKEKDLAKKIRDTLQTKLMNKIVQLKNTSSEKYGRLLADVYLDGVC-INEWMVEQGYAVR-YHGGTKI 157          
BLAST of mRNA_E-siliculosus-1a_M_contig96.17623.1 vs. uniprot
Match: Q2SKK0_HAHCH (Micrococcal nuclease-like protein n=5 Tax=Hahella TaxID=158481 RepID=Q2SKK0_HAHCH)

HSP 1 Score: 65.5 bits (158), Expect = 9.440e-11
Identity = 44/115 (38.26%), Postives = 65/115 (56.52%), Query Frame = 1
Query:   76 VVFCPSCYDGDSFRLTWTDGSGNKCRIMG-RLSGVDTPEMKGSSDKEKALALRAKERLSDVVAG-KFVTIRKPGSEKYGRALCDLQTATLASVSKYMIAEPEICRPYDGGKKVAW 414
            V    S YDGD+FR    D      + +G R+  +DTPE++GS  KEKALAL+AK+ L + +   K V +     +KY R L D+  A   S+ + +I E ++  PY+GG K+ W
Sbjct:   33 VAQVTSIYDGDTFRADIADWPAIVGQRIGVRIKHIDTPELRGSCKKEKALALKAKQFLVEKLRNAKQVKLENIQRDKYFRVLADV-VADGESLGQSLIKE-KLAVPYEGGTKIDW 145          
BLAST of mRNA_E-siliculosus-1a_M_contig96.17623.1 vs. uniprot
Match: A0A6C0F345_9ZZZZ (TNase-like domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0F345_9ZZZZ)

HSP 1 Score: 64.7 bits (156), Expect = 2.020e-10
Identity = 43/118 (36.44%), Postives = 67/118 (56.78%), Query Frame = 1
Query:   58 PLRDGDVVFCPSCYDGDSFRLTWTDGSGNK--CRIMGRLSGVDTPEMKGSSDKEKALALRAKERLSDVVAGKFVTIRKPGSEKYGRALCDLQTATLASVSKYMIAEPEICRPYDGGKK 405
            P+  G V+     YDGD+  +       N    R   RL G+D+PE+KG SD EKALA ++++ LS+++  K V ++   +EKYGR L ++    L  V+K+M+ + +    YDGG K
Sbjct:   33 PVTCGRVI---KVYDGDTITVASKLPFRNSPIYRFSVRLLGIDSPEIKGHSDAEKALAKKSRDALSELIFEKNVVLKDVSTEKYGRLLANVYINDL-HVNKWML-DNKYAVEYDGGTK 145          
BLAST of mRNA_E-siliculosus-1a_M_contig96.17623.1 vs. uniprot
Match: A0A6C0DSF6_9ZZZZ (TNase-like domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0DSF6_9ZZZZ)

HSP 1 Score: 65.5 bits (158), Expect = 2.140e-10
Identity = 42/118 (35.59%), Postives = 67/118 (56.78%), Query Frame = 1
Query:   58 PLRDGDVVFCPSCYDGDSFRLTWTDGSGNK--CRIMGRLSGVDTPEMKGSSDKEKALALRAKERLSDVVAGKFVTIRKPGSEKYGRALCDLQTATLASVSKYMIAEPEICRPYDGGKK 405
            P+ +G V+     YDGD+  +       N    R   RL+G+DTPE+KG +D EKA A  A++ L +++  K VT++   +EKYGR L D+    + S++K+M+ +      Y+GG K
Sbjct:   65 PITEGFVI---KVYDGDTITVASKLPYPNSPVYRFHVRLNGIDTPEIKGKTDDEKAAAHHAQKALENLILHKTVTLKNLKTEKYGRILADVYLKKV-SLNKWML-DNNYAVKYEGGTK 177          
BLAST of mRNA_E-siliculosus-1a_M_contig96.17623.1 vs. uniprot
Match: UPI001F2861A9 (thermonuclease family protein n=1 Tax=Zavarzinia compransoris TaxID=1264899 RepID=UPI001F2861A9)

HSP 1 Score: 64.7 bits (156), Expect = 2.320e-10
Identity = 39/106 (36.79%), Postives = 59/106 (55.66%), Query Frame = 1
Query:  100 DGDSFRLTWTDGSGNKCRIMGRLSGVDTPEMKGSSDKEKALALRAKERLSDVVAGKFVTIRKPGSEKYG-RALCDLQTATLASVSKYMIAEPEICRPYDGGKKVAW 414
            DGD+  +      G +     RL+G+DTPE++G    EKALA RA++ LS++VA   VT+R    +KYG R L  +      ++ + +IA   + RPYDG  +  W
Sbjct:   53 DGDTMDVRVHIWLGQEVVTRVRLAGIDTPELRGECPAEKALAARARDMLSNLVAAGEVTLRDVAFDKYGGRVLARVTDGEGRALGERLIAAG-LARPYDGKARAGW 157          
BLAST of mRNA_E-siliculosus-1a_M_contig96.17623.1 vs. uniprot
Match: D8LP57_ECTSI (SNase-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP57_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 1.400e-8
Identity = 36/105 (34.29%), Postives = 63/105 (60.00%), Query Frame = 1
Query:  100 DGDSFRLTWTDGSGNKCRIMGRLSGVDTPEMKGSSDKEKALALRAKERLSDVVAGKFVTIRKPGSEKYGRALCDLQTATLASVSKYMIAEPEICRPYDGGKKVAW 414
            DGDS +++     G+      R+  +D+PE++ S++KEKAL L+AK R+ ++V GK V ++    +K+GR L  ++T+   +V   +I+   +   Y GGK+ AW
Sbjct:   24 DGDSCKVSIAV-DGHAWTFPVRIFDIDSPEVRTSNEKEKALGLKAKARVEELVLGKIVALKLGKFDKFGRLLGSIETSDGVNVGDDLISRG-LAVKY-GGKRHAW 125          
BLAST of mRNA_E-siliculosus-1a_M_contig96.17623.1 vs. uniprot
Match: A0A317EBI3_9PROT (Nuclease n=2 Tax=Zavarzinia compransoris TaxID=1264899 RepID=A0A317EBI3_9PROT)

HSP 1 Score: 58.2 bits (139), Expect = 4.480e-8
Identity = 37/106 (34.91%), Postives = 54/106 (50.94%), Query Frame = 1
Query:  100 DGDSFRLTWTDGSGNKCRIMGRLSGVDTPEMKGSSDKEKALALRAKERLSDVVAGKFVTIRKPGSEKYG-RALCDLQTATLASVSKYMIAEPEICRPYDGGKKVAW 414
            DGD+  +      G +     R++G+DTPE++G  D EKA A  AK  L+ +VA   V +R    +KYG R L  +  A    ++  MI    + RPY GG +  W
Sbjct:   29 DGDTLEVRVQIWLGQEVITRVRMTGIDTPELRGQCDAEKARAREAKALLARLVAPGTVILRDVTYDKYGGRVLAAVSGADGRGLADQMIGAG-LARPYQGGGRAGW 133          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig96.17623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q8QNB7_ESV1K3.240e-8384.17EsV-1-168 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
D8LPI6_ECTSI2.510e-7983.58EsV-1-168 (Partial) (Fragment) n=1 Tax=Ectocarpus ... [more]
A0A6C0DME7_9ZZZZ1.030e-1134.88TNase-like domain-containing protein n=1 Tax=viral... [more]
A0A6C0HI73_9ZZZZ3.360e-1134.09TNase-like domain-containing protein n=1 Tax=viral... [more]
Q2SKK0_HAHCH9.440e-1138.26Micrococcal nuclease-like protein n=5 Tax=Hahella ... [more]
A0A6C0F345_9ZZZZ2.020e-1036.44TNase-like domain-containing protein n=1 Tax=viral... [more]
A0A6C0DSF6_9ZZZZ2.140e-1035.59TNase-like domain-containing protein n=1 Tax=viral... [more]
UPI001F2861A92.320e-1036.79thermonuclease family protein n=1 Tax=Zavarzinia c... [more]
D8LP57_ECTSI1.400e-834.29SNase-like n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A317EBI3_9PROT4.480e-834.91Nuclease n=2 Tax=Zavarzinia compransoris TaxID=126... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig96contigE-siliculosus-1a_M_contig96:581133..581552 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size420
Model size420
Exons1
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelPhyllobacteriaceae
COG Functional cat.L
EggNOG OGs1N0I9@1224,2UC08@28211,43KNA@69277,COG1525@1,COG1525@2
EggNOG free text desc.Staphylococcal nuclease homologue
Seed eggNOG ortholog1116369.KB890024_gene4384
Seed ortholog evalue1.9e-10
Seed ortholog score72.4
Taxonomic scopeBacteria
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936541.3788118-CDS-E-siliculosus-1a_M_contig96:581132..5815521622936541.3788118-CDS-E-siliculosus-1a_M_contig96:581132..581552Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 581133..581552 +
1696251122.7485542-CDS-E-siliculosus-1a_M_contig96:581132..5815521696251122.7485542-CDS-E-siliculosus-1a_M_contig96:581132..581552Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 581133..581552 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig96.17623.1prot_E-siliculosus-1a_M_contig96.17623.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig96 581133..581552 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig96.17623.1

>prot_E-siliculosus-1a_M_contig96.17623.1 ID=prot_E-siliculosus-1a_M_contig96.17623.1|Name=mRNA_E-siliculosus-1a_M_contig96.17623.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=140bp
TQNILAKEELSYEECEQFLPLRDGDVVFCPSCYDGDSFRLTWTDGSGNKC
RIMGRLSGVDTPEMKGSSDKEKALALRAKERLSDVVAGKFVTIRKPGSEK
YGRALCDLQTATLASVSKYMIAEPEICRPYDGGKKVAWD*
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mRNA from alignment at E-siliculosus-1a_M_contig96:581133..581552+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig96.17623.1 ID=mRNA_E-siliculosus-1a_M_contig96.17623.1|Name=mRNA_E-siliculosus-1a_M_contig96.17623.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=420bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:581133..581552+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ACCCAAAATATATTGGCAAAAGAAGAGCTATCGTACGAAGAGTGTGAACA ATTCCTCCCGCTCAGAGATGGAGATGTTGTTTTCTGCCCGTCTTGTTACG ATGGCGACAGCTTCCGCTTGACGTGGACCGATGGTTCGGGAAACAAGTGC AGAATTATGGGACGATTGTCGGGCGTGGACACGCCCGAGATGAAAGGTTC ATCGGATAAGGAGAAAGCTCTTGCACTGAGAGCAAAAGAGAGATTGAGTG ATGTGGTTGCGGGAAAGTTTGTGACGATCCGTAAACCGGGCAGTGAGAAA TACGGAAGAGCTTTGTGTGACTTACAGACAGCAACACTTGCGTCTGTATC TAAATACATGATTGCTGAACCCGAGATTTGTCGTCCTTACGATGGCGGGA AGAAGGTTGCTTGGGATTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:581133..581552+

>mRNA_E-siliculosus-1a_M_contig96.17623.1 ID=mRNA_E-siliculosus-1a_M_contig96.17623.1|Name=mRNA_E-siliculosus-1a_M_contig96.17623.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=840bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:581133..581552+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ACCCAAAATATATTGGCAAAAGAAGAGCTATCGTACGAAGAGTGTGAACA
ATTCCTCCCGCTCAGAGATGGAGATGTTGTTTTCTGCCCGTCTTGTTACG
ATGGCGACAGCTTCCGCTTGACGTGGACCGATGGTTCGGGAAACAAGTGC
AGAATTATGGGACGATTGTCGGGCGTGGACACGCCCGAGATGAAAGGTTC
ATCGGATAAGGAGAAAGCTCTTGCACTGAGAGCAAAAGAGAGATTGAGTG
ATGTGGTTGCGGGAAAGTTTGTGACGATCCGTAAACCGGGCAGTGAGAAA
TACGGAAGAGCTTTGTGTGACTTACAGACAGCAACACTTGCGTCTGTATC
TAAATACATGATTGCTGAACCCGAGATTTGTCGTCCTTACGATGGCGGGA
AGAAGGTTGCTTGGGATTAAACCCAAAATATATTGGCAAAAGAAGAGCTA
TCGTACGAAGAGTGTGAACAATTCCTCCCGCTCAGAGATGGAGATGTTGT
TTTCTGCCCGTCTTGTTACGATGGCGACAGCTTCCGCTTGACGTGGACCG
ATGGTTCGGGAAACAAGTGCAGAATTATGGGACGATTGTCGGGCGTGGAC
ACGCCCGAGATGAAAGGTTCATCGGATAAGGAGAAAGCTCTTGCACTGAG
AGCAAAAGAGAGATTGAGTGATGTGGTTGCGGGAAAGTTTGTGACGATCC
GTAAACCGGGCAGTGAGAAATACGGAAGAGCTTTGTGTGACTTACAGACA
GCAACACTTGCGTCTGTATCTAAATACATGATTGCTGAACCCGAGATTTG
TCGTCCTTACGATGGCGGGAAGAAGGTTGCTTGGGATTAA
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