prot_E-siliculosus-1a_M_contig96.17619.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_M_contig96.17619.1
Unique Nameprot_E-siliculosus-1a_M_contig96.17619.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length298
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig96.17619.1 vs. uniprot
Match: Q6XLX7_9PHYC (FirrV-1-C1 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLX7_9PHYC)

HSP 1 Score: 80.1 bits (196), Expect = 2.810e-13
Identity = 79/280 (28.21%), Postives = 128/280 (45.71%), Query Frame = 0
Query:   25 FGDVASFDGTSSSLTLAASDVPSGMLGNSPRTFSLWIYPGDSNTNGNIIVYG---SNARPFRFLWNQSTRTVMVAFALFFKIGTIEIPVDSWAHVAVTFDASDTMNTYVNG-VVDLSFSFATINTGAGPFAIGRSALNGNLPMYEGYLADFRAYDDALDAVAVAGLYSDGPLDLFKIVFEATMYTHLADVSWNSVFGANVYTATYVTDGIEHTMLQDST-------ELSVTTTELY---PGQTYEFRLYTDSDPSTPVVTLAETTPVLDASTGSELAQRL 290
            +G  A FDGT+    L   +VP+ +  NS R+ S+WIYP  ++ +  I+      SN    ++  + +     +   +F    +   P+++W HV VT++ S+T+  YVNG VV      A   T A     G  A +     + G + DFR Y   + A  +A + S GP D++ +   A +YT+L D++W    G         T  I  T+  D+T       E   T T ++   PG+ + F L  D      V TL  + P +  ST ++L + L
Sbjct:   42 YGTAAYFDGTT---RLEIQNVPTSLSNNSARSISVWIYPVSASDHNTILTSREDVSNVHVLQYRTDFNVALQNINVGVFSPSNSC--PLNTWTHVGVTYNGSNTVTLYVNGSVVAQRTDMAWNLTNAEMKLFG--ARDEGSKFFNGNMLDFRLYGGDIGATEMASIASSGP-DIYSL--SANVYTYLVDLTWR---GGE-------TTSITRTLSTDTTSVFDVPFETGETNTRIFVLNPGEDHTFHLIVDGSV---VNTLVVSVPTVSESTVADLLEAL 298          
BLAST of mRNA_E-siliculosus-1a_M_contig96.17619.1 vs. uniprot
Match: V5BX49_9GAMM (PDK repeat-containing protein n=2 Tax=Methyloglobulus TaxID=1410680 RepID=V5BX49_9GAMM)

HSP 1 Score: 55.5 bits (132), Expect = 6.060e-5
Identity = 54/188 (28.72%), Postives = 88/188 (46.81%), Query Frame = 0
Query:    2 DSSGNGVDITNTGVVSATDPLGQFGDVASFDGTSSSLTL---AASDVPSGMLGNSPRTFSLWIYPGDSNTNGNIIVYGSNARPFRFLWNQSTRTVMVAFALFFKI-GTIEIPVDSWAHVAVTFDASDTMNTYVNGVVDLSFS-FATINTGAGPFAIGRSALNGNLPMYEGYLADFRAYDDALDAVAVA 184
            D+SGNG +   T  V      G+FG+   F+GT++ + +   A+  + +GM      T   W+ P   N     ++   +   F  +   +  +V V    F +I GT  +PV++W H+AVT+D   T   +VNG    S +    I T  GP  IG  ++ G    + GY+ + R Y+ AL    +A
Sbjct:  309 DASGNGNNGVMTNAVRVAP--GKFGNALQFNGTNALVKINDSASLKLTTGM------TLEAWVMPSAINNLWKDVIEKGDDNYF-LMATSNRSSVPVGGGTFGEINGTSALPVNTWTHLAVTYDGV-TQRLFVNGAQVSSIARTGNIATSTGPLQIGGDSIYGQY--FNGYIDEVRVYNRALAQTEIA 484          
BLAST of mRNA_E-siliculosus-1a_M_contig96.17619.1 vs. uniprot
Match: UPI001904EC12 (Ig-like domain-containing protein n=1 Tax=Pelagicoccus mobilis TaxID=415221 RepID=UPI001904EC12)

HSP 1 Score: 55.5 bits (132), Expect = 8.030e-5
Identity = 61/198 (30.81%), Postives = 82/198 (41.41%), Query Frame = 0
Query:    2 DSSGNGVDITNTGVVSATDPLGQFGDVASFDGTSSSLTLAASDVPSGMLGNSPRTFSLWIYPGD-SNTNGNIIVYGSNARPFRFLWNQST----------RTVMVAFALFFKIGTIEIPVDSWAHVAVTFDASDTMNTYVNGVVDLSFSFATI--NTGAGPFAIGRSALNGNLPMYEGYLADFRAYDDALDAVAVAGL 186
            D S NG D +    VS T   GQ G    F GT S + L   D+P   +     T + WI P + S ++G II   +        W  ST          R    A      IG+  IPV +W HVA T+D SD M  ++NGV D S S   I       P A+G     G    + G + + + Y  AL+   +  L
Sbjct: 1270 DVSPNGFDGSIASGVSRT-ASGQLGRALDFSGTDSRVNLGTLDIPGAEM-----TIAAWIRPDNFSVSDGRIISKATGLSGNEHFWMLSTISDGGTKLRMRLKTNAGGTRTLIGSTNIPVGAWTHVAGTYDGSD-MKIFINGVEDGSLSAGGIIAQNETVPVAVGDQPQGGR--SFSGLIDEVQIYTLALNVNDIQSL 1458          
BLAST of mRNA_E-siliculosus-1a_M_contig96.17619.1 vs. uniprot
Match: UPI001F21DF71 (LamG domain-containing protein n=1 Tax=Paenibacillus sp. JJ-42 TaxID=2905648 RepID=UPI001F21DF71)

HSP 1 Score: 55.1 bits (131), Expect = 8.730e-5
Identity = 38/140 (27.14%), Postives = 68/140 (48.57%), Query Frame = 0
Query:   51 GNSPRTFSLWIYPGDSNTNGNIIVYGSNARPFRFLWNQSTRTVMVAFALFFKIGTIEIPVDSWAHVAVTFDASDTMNTYVNGVVDLSFSFATINTGAGPFAIGRSALNGNLPMYEGYLADFRAYDDALDAVAVAGLYSDG 190
            G S  T + W+    + +    ++         +L+  ST  V         +GT  IPV+ W H+AVT+D + T   Y+NGV++ S + +  +  +G   IG S   GNL  ++G++ D + ++ AL +  ++  Y  G
Sbjct:  720 GTSSFTATAWVKHDGAASTAKYVIQQDGTNGKIWLYRDSTGVVGTYLGGLPLLGTTNIPVNQWVHLAVTYDGT-TAKVYMNGVLENSAARSVTSEASG-IIIGASKTFGNL--WKGWIDDTQVFNRALSSTEISDQYELG 855          
BLAST of mRNA_E-siliculosus-1a_M_contig96.17619.1 vs. uniprot
Match: A0A0Q8VDQ4_9ACTN (Fibronectin type-III domain-containing protein n=2 Tax=unclassified Nocardioides TaxID=2615069 RepID=A0A0Q8VDQ4_9ACTN)

HSP 1 Score: 55.1 bits (131), Expect = 9.500e-5
Identity = 53/178 (29.78%), Postives = 85/178 (47.75%), Query Frame = 0
Query:    2 DSSGNGVDITNTGVVSATDPLGQFGDVASFDGTSSSLTLAASDVPSGMLGNSPRTFSLWIYPGDSNTNGNIIVYGS-NARPFRFLWNQSTRTVMVAFALFFKIGTIEIPVDSWAHVAVTFDASDTMNTYVNGVVDLSFSFA-TINTGAGPFAIGRSALNGNLPMYEGYLADFRAYDDA 177
            D+SG+G       V  AT   G++G   SFDGT+   ++   D PS  L +SP T   W+ P  S+    I++  + N   +       T            IGT  +P+++W+HVA T+D S  +  YVNG +  + ++A  + T A P  +G +A+ G    + G L + R +  A
Sbjct: 1142 DASGSG---NGGSVFQATWTAGKYGTALSFDGTNDYASVP--DAPSLDL-SSPMTLEAWVRPTASSGWRTILMKETPNDLAYSLYATSGTNRPSAWIGGGSSIGTAALPLNTWSHVASTYDGSR-LRLYVNGTLVTNAAYAGAVPTSASPLKLGGNAVWGEF--FAGQLDEVRIFSAA 1310          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig96.17619.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
Q6XLX7_9PHYC2.810e-1328.21FirrV-1-C1 n=1 Tax=Feldmannia irregularis virus a ... [more]
V5BX49_9GAMM6.060e-528.72PDK repeat-containing protein n=2 Tax=Methyloglobu... [more]
UPI001904EC128.030e-530.81Ig-like domain-containing protein n=1 Tax=Pelagico... [more]
UPI001F21DF718.730e-527.14LamG domain-containing protein n=1 Tax=Paenibacill... [more]
A0A0Q8VDQ4_9ACTN9.500e-529.78Fibronectin type-III domain-containing protein n=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006558LamG-like jellyroll foldSMARTSM00560LamGL_3coord: 56..181
e-value: 2.7E-4
score: 25.0
NoneNo IPR availableGENE3D2.60.120.200coord: 1..189
e-value: 8.3E-26
score: 93.1
NoneNo IPR availablePFAMPF13385Laminin_G_3coord: 33..181
e-value: 2.2E-21
score: 76.6
IPR013320Concanavalin A-like lectin/glucanase domain superfamilySUPERFAMILY49899Concanavalin A-like lectins/glucanasescoord: 2..189
IPR036116Fibronectin type III superfamilySUPERFAMILY49265Fibronectin type IIIcoord: 206..264

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig96contigE-siliculosus-1a_M_contig96:561325..562218 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig96.17619.1mRNA_E-siliculosus-1a_M_contig96.17619.1Ectocarpus siliculosus Ec864m_EcPH12_78m malemRNAE-siliculosus-1a_M_contig96 561325..562218 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_M_contig96.17619.1 ID=prot_E-siliculosus-1a_M_contig96.17619.1|Name=mRNA_E-siliculosus-1a_M_contig96.17619.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=298bp
EDSSGNGVDITNTGVVSATDPLGQFGDVASFDGTSSSLTLAASDVPSGML
GNSPRTFSLWIYPGDSNTNGNIIVYGSNARPFRFLWNQSTRTVMVAFALF
FKIGTIEIPVDSWAHVAVTFDASDTMNTYVNGVVDLSFSFATINTGAGPF
AIGRSALNGNLPMYEGYLADFRAYDDALDAVAVAGLYSDGPLDLFKIVFE
ATMYTHLADVSWNSVFGANVYTATYVTDGIEHTMLQDSTELSVTTTELYP
GQTYEFRLYTDSDPSTPVVTLAETTPVLDASTGSELAQRLKATSQAS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036116FN3_sf
IPR013320ConA-like_dom_sf
IPR006558LamG-like