mRNA_E-siliculosus-1a_M_contig96.17611.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig96.17611.1 vs. uniprot
Match: A0A6H5KYD8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYD8_9PHAE) HSP 1 Score: 1672 bits (4331), Expect = 0.000e+0 Identity = 1195/1523 (78.46%), Postives = 1215/1523 (79.78%), Query Frame = 2
Query: 356 GGGRLDMADVERPTRRRGKMGGAARALALGLTIGGWASSQGLTAAASDLPAAVAAAGGLQECGFIVTMWGESAACEQQLDGAAVGCDKKSFSRRADRVQALVGSVPKEAGLGPVREAGSSEWRQVLDFGCVDGRDKLVVSLYDNLMRPLATCEVGETASIESSKAMVCEGAHGMHFKYTVEHTALLAEPIRPQRRAQLVTPTATPAPAAVGTTPAXXXPEXXXXXXXXXXXXXXXXXXX--------------APETPATEAPEPEPTEPPTAEATSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATPAPVTAXXXXXXXXXXTPAPVAAVVXXXXXXXXXXXXXXXXXXXXXXXXXXXTVGTTDSXXXXXXXXXXXXXXXXXXXXXXXXXESPAPTALIGTDEPTLAPRVT----ETXXXXXXXXXXXEPAPAXXXXXXXXXXXXPVASPPPVDFPSSSPSTXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------------------------------------------------------------------------------------------------------------------------------------------VVSTETVAPGAGAAVTTPXXXXXXXXXXXXXXXSAAEGETPAPFSSPAPVATSSSSAEATLSPNTEEVCTEACVLDNLTPSSFSATYYDARCEGKDDSDLSGCNLSSTNSEWNNCRNCIINLESFEAENGVGSVEWPLCPCCVAETLLMDPQTDECIAEAGTAVTTPTPTMVGETTLNLRTEANDPDLLMMSFNSEDCTAFGIAVIPGTTPKVMEISRYTDADGLCNSNFDMLVGTECDLESYSWDYSSSSFEYMYTCSTTTSAGRRRLADGGSEEYPIESDAVLCNNGDHFVSLSSLDGGETGLVYATPDAENYDSVTDSQTALSGSDMCGESTDANVVTTLLLEEIEEDDGLSGLLGEADESSSEGDGLGYEIIIGIVCAVVLLMGCACFCCYRHRKGKESRAVHMRRNLGYTPDMEAKGEGNFGPTNKHVAITRGGGPQVTPEMLATTSYSQPSHPPTHQRAPSEAPSSIIEDNIANNYRPKTAAKSWKKRKEHKDLTKPVPQQHVIGGSPNSEELKAENSREGSRANSNTRSQASARSEQLSEHSLSQLQMANQTAAAQPNYGYTFEHVEEEGXXXXXXXXXARSAATGMSGPSKYAPSXXXXSNHQDGVTHDLMSQYEPSVYEADXXXXXXXXXXXXXXGDESSSYSYNDGAGSRRGGYAGXXXXXXXXRGGRHMSGRASVADTAAMSHLGSVMEMDDGGSAYAPSESYVSSYVSSEDDDGRPARSIHPRGGPNDAQAMGGVPTDGGXXXXXXXXXXGYSRHNAHRSGRQXXXXXXXXXXXXXXXXXXXXXXXXXXIEGGSRSYDDEDDESAVGRTAVSMDDLEYYSEDQNAGGMTSGRGAPLTDLEETHGGQRW 4423
GGGR MADVERPTRRRGKMGGA RALALGLTIGGWASSQGLTAAASDLPAA AA G QECGFIVTMWGESAACEQQLDGAAVGCDKKSFSRRADRVQALVGSV KEAGLGPVREAGS WRQVLDFGCVDGRDKLVV+LYDNLMRPLATCEVGETASIESSKAM CEGAHGMHFKY VEHTALLAEPIRPQRRAQ VT TATP PAAV T XXX XXXXXXXXXXXXXXXXXXX APE PATEAPEPEPTEPPTAEATSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX T +PVT XXX TPAPVAAVVXXXXXXXXXXXXXXX TVGTTD XXXXXXXXXXXXXXXXXXXXXXXXXESPAPTALIGTDEPTLAPRVT ET XXXXXXXX PA A PVASPPPVDF SSSPST XXX X X VVSTETVAPGAGAAVT XXXXXXXXXXXXXXXSAA GE PAPFSSPAPVAT SS AEATLSPNTEEVCT ACV DN+T S FSATYYDARCEGKDDSDLSGCNLSS NSEWNNCR CII+LESFEAENG GSV+WPLCPCCVAETL MDPQTDECIAEAGTAVTTP PTM G+TTL L TEANDPDLLMMSFNS+DCTAFGIAVIPGT PKVME++ YTDA+GLCNSNFD LVGTEC+LESYSWDYS SSFEYMYTCST+TSAGRRRLADGGSE YP ESDAVLCNNG HFVSLSS DGGETGLVYATPDAENYDSVT+SQTALSGSDMCG STDANVVTT+LLE+IEE+ GLSGLL EADESSSEGDGLGYEIIIGIVC VVLLMGCACFCCYRHRKGKESR VHMRRNLG+TPDMEAKGEGNFGPTNKHVAITRGGGPQVTPEMLATTSYSQPSHPPTHQRAPSEAPSSIIEDNIANNYRPKTAAKSWK+RK HKDLTKPVPQQHVIGGSPNSEELKAE+SREGS ANSNTRSQASARSEQLSEHSLSQLQMANQTAAAQPNYGYTFEHVEE XXXXXXXARSAATGMSGPSKYAPS XXXSNHQDGVTHDLMSQYEPSVYEADXXXXXXXXXXXXXX ESSSYSYNDGAG XXXXXXX RH+SGRASVADTAAMSHLGSVMEMDDGGSAYAPSESYVSSYVSSEDDDGRPARSIHPRGGPNDAQAMGGVPTDGGXXXXXXXXXXGYSRHNAHRSGRQXXXXXXXXXXXXXXXXXXXXXXXXXX EGGSRSYDDEDDESAVGRTAVSMDDLEYYSED NAGGMTSGRGAPLTDLEETHGGQRW
Sbjct: 3 GGGRRAMADVERPTRRRGKMGGAGRALALGLTIGGWASSQGLTAAASDLPAAAAA--GSQECGFIVTMWGESAACEQQLDGAAVGCDKKSFSRRADRVQALVGSVRKEAGLGPVREAGSPVWRQVLDFGCVDGRDKLVVTLYDNLMRPLATCEVGETASIESSKAMGCEGAHGMHFKYAVEHTALLAEPIRPQRRAQSVTSTATPTPAAVVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAPEMPATEAPEPEPTEPPTAEATSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXI---TESPVTPGXXXP-----TPAPVAAVVXXXXXXXXXXXXXXXPQAPVAAPSLEPTVGTTDXXXXXXXXXXXXXXXXXXXXXXXXXXESPAPTALIGTDEPTLAPRVTARVTETPVVXXXXXXXXGPAGAVTAS--------PVASPPPVDFLSSSPSTPXXXVPPSSXSDPPTGLAAPPTERPXXXXXXXXXXTPEPPTDSPVLPPFPVPSTPRPTTSPPTAVTXMXXAXTXXXXXXXXXXXXXXXXXSTTSPSTPQXXAARPNAAAFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXPMNPLPREAPSSSPTRSXSSXXXXXXXXXXXXXXSPVVSTETVAPGAGAAVTXXXXXXXXXXXXXXXXXSAAAGEAPAPFSSPAPVATPSSPAEATLSPNTEEVCTTACVEDNVTVSYFSATYYDARCEGKDDSDLSGCNLSSANSEWNNCRYCIIDLESFEAENGEGSVDWPLCPCCVAETLGMDPQTDECIAEAGTAVTTPAPTMFGQTTLELTTEANDPDLLMMSFNSDDCTAFGIAVIPGTPPKVMEVAGYTDANGLCNSNFDKLVGTECELESYSWDYSDSSFEYMYTCSTSTSAGRRRLADGGSEAYPFESDAVLCNNGAHFVSLSSFDGGETGLVYATPDAENYDSVTNSQTALSGSDMCGASTDANVVTTMLLEQIEEE-GLSGLLEEADESSSEGDGLGYEIIIGIVCVVVLLMGCACFCCYRHRKGKESRGVHMRRNLGFTPDMEAKGEGNFGPTNKHVAITRGGGPQVTPEMLATTSYSQPSHPPTHQRAPSEAPSSIIEDNIANNYRPKTAAKSWKERKAHKDLTKPVPQQHVIGGSPNSEELKAEDSREGSHANSNTRSQASARSEQLSEHSLSQLQMANQTAAAQPNYGYTFEHVEE--GEXXXXXXXARSAATGMSGPSKYAPSGXXXSNHQDGVTHDLMSQYEPSVYEADXXXXXXXXXXXXXXXXESSSYSYNDGAGXXXXXXXXXXXXXXX----RHVSGRASVADTAAMSHLGSVMEMDDGGSAYAPSESYVSSYVSSEDDDGRPARSIHPRGGPNDAQAMGGVPTDGGXXXXXXXXXXGYSRHNAHRSGRQXXXXXXXXXXXXXXXXXXXXXXXXXXFEGGSRSYDDEDDESAVGRTAVSMDDLEYYSEDHNAGGMTSGRGAPLTDLEETHGGQRW 1500
BLAST of mRNA_E-siliculosus-1a_M_contig96.17611.1 vs. uniprot
Match: D8LQ66_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ66_ECTSI) HSP 1 Score: 1346 bits (3484), Expect = 0.000e+0 Identity = 1029/1188 (86.62%), Postives = 1038/1188 (87.37%), Query Frame = 2
Query: 875 MHFKYTVEHTALLAEPIRPQRRAQLVTPTATPAPAAVGTTPAXXXPEXXXXXXXXXXXXXXXXXXXAPETPATEAPEPEPTEPPTAEATSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATPAPVTAXXXXXXXXXXTPAPVAAVVXXXXXXXXXXXXXXXXXXXXXXXXXXXTVGTTDSXXXXXXXXXXXXXXXXXXXXXXXXXESPAPTALIGTDEPTLAPRVTETXXXXXXXXXXXEPAPAXXXXXXXXXXXXPVASPPPVDFPSSSPSTXXXXXXXXXXXXXXXXXXXXXXXXXXVVSTETVAPGAGAAVTTPXXXXXXXXXXXXXXXSAAEGETPAPFSSPAPVATSSS----SAEATLSPNTEEVCTEACVLDNLTPSSFSATYYDARCEGKDDSDLSGCNLSSTNSEWNNCRNCIINLESFEAENGVGSVEWPLCPCCVAETLLMDPQTDECIAEAGTAVTTPTPTMVGETTLNLRTEANDPDLLMMSFNSEDCTAFGIAVIPGTTPKVMEISRYTDADGLCNSNFDMLVGTECDLESYSWDYSSSSFEYMYTCSTTTSAGRRRLADGGSEEYPIESDAVLCNNGDHFVSLSSLDGGETGLVYATPDAENYDSVTDSQTALSGSDMCGESTDANVVTTLLLEEIEEDDGLSGLLGEADESSSEGDGLGYEIIIGIVCAVVLLMGCACFCCYRHRKGKESRAVHMRRNLGYTPDMEAKGEGNFGPTNKHVAITRGGGPQVTPEMLATTSYSQPSHPPTHQRAPSEAPSSIIEDNIANNYRPKTAAKSWKKRKEHKDLTKPVPQQHVIGGSPNSEELKAENSREGSRANSNTRSQASARSEQLSEHSLSQLQMANQTAAAQPNYGYTFEHVEEEGXXXXXXXXXARSAATGMSGPSKYAPSXXXXSNHQDGVTHDLMSQYEPSVYEADXXXXXXXXXXXXXXGDESSSYSYNDGAGSRRGGYAGXXXXXXXXRGGRHMSGRASVADTAAMSHLGSVMEMDDGGSAYAPSESYVSSYVSSEDDDGRPARSIHPRGGPNDAQAMGGVPTDGGXXXXXXXXXXG-YSRHNAHRSGRQXXXXXXXXXXXXXXXXXXXXXXXXXXIEGGSRSYDDEDDESAVGRTAVSMDDLEYYSEDQNAGGMTSGRGAPLTDLEETHGGQRW 4423
MHFKY VEHTALLAE IRPQRRAQLVTPTATP PAAVGTT XXX XXXXXXXXXXXXXXXXXX APETPATEAPEPEPTEPPTAEA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX T APV XXXXXXXXXX PVAAVVXXXXXXXXXXXXXXXX XXX XXXXXXXXXXXXXXXXXXXXXXXXXESPAPTALIGTDEPTLAPRVTETXXXXXXXXXXX XXXXXXXXXXXX DFPSSSPST XXXXXXXXXXXXXXXXXXXXXX GAAVTTP XXXXXXXXXXXX S EATLSPNTEEVCTEACV+DNLT S+ SATYYDARCEGKDDSDLSGCNLSS NS+WNNCRNCIINLESFEAENG EAGTAVTTPTPTMVGETTL+LRTEANDPDLLMMSFNSEDCTAFGIAVIPG TPKVMEISRYTDADGLCNSNFD+LVGTECDLESYSW YSS+SF+YMYTCSTTTSAGRRRLADGGSE YPIESDAVLCNNGDHFVSLSSL GETGLVYATPDAENYDSVTDSQT+LSGSDMCGESTDANVVTT+LLEEIEEDDGLSGLLGEADESSSEG GL YEIIIGIVCAVVLLMGCACFCCYRHRKGKESRAVHMRRNLGYTPDMEAKGEGNFGPTNKHVAITRGGGPQVTPEMLATTSYSQPSHPPTHQRAPSEAPSSIIEDNIANNYRPKTAAKSWKKRKEHKDLTKPVPQQHVIGGSPNSEELKAENS EGSRANSNTRSQASARSEQLSEHSLSQLQMANQTAAAQPNYGYTFEHVEEEGXXXXXXXX ARSAATGMSGPSKYAPSXXXXSNHQDGVTHDLMSQYEPSVYEADXXXXXXXXXXXXXXGDESSSYSYNDGAGSRRGGYAGXXXXXX RGGRHMSGRASVADTAAMSHLGSVMEMDDGGSAYAPSESYVSSYVSSEDDDGRPARSIHPRGGPNDAQAMGGVPTDGGXXXXXXXXXX YSRHNAHRSGRQ XXXXXXXXXXXXX EGGSRSYDDEDDESAVGRTAVSMDDLEYYSEDQNAGGMTSGRGAPLTDLEETHGGQRW
Sbjct: 1 MHFKYAVEHTALLAEAIRPQRRAQLVTPTATPTPAAVGTTXXXXXXXXXXXXXXXXXXXXXXXXXPAPETPATEAPEPEPTEPPTAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---TAAPVXXXXXXXXXXXXXXXPVAAVVXXXXXXXXXXXXXXXXQAPVAAPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESPAPTALIGTDEPTLAPRVTETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--XDFPSSSPSTPPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--XGAAVTTPAPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEATLSPNTEEVCTEACVVDNLTLSTHSATYYDARCEGKDDSDLSGCNLSSANSDWNNCRNCIINLESFEAENG----------------------------EAGTAVTTPTPTMVGETTLDLRTEANDPDLLMMSFNSEDCTAFGIAVIPGATPKVMEISRYTDADGLCNSNFDILVGTECDLESYSWAYSSNSFDYMYTCSTTTSAGRRRLADGGSETYPIESDAVLCNNGDHFVSLSSLADGETGLVYATPDAENYDSVTDSQTSLSGSDMCGESTDANVVTTMLLEEIEEDDGLSGLLGEADESSSEGGGLRYEIIIGIVCAVVLLMGCACFCCYRHRKGKESRAVHMRRNLGYTPDMEAKGEGNFGPTNKHVAITRGGGPQVTPEMLATTSYSQPSHPPTHQRAPSEAPSSIIEDNIANNYRPKTAAKSWKKRKEHKDLTKPVPQQHVIGGSPNSEELKAENSHEGSRANSNTRSQASARSEQLSEHSLSQLQMANQTAAAQPNYGYTFEHVEEEGXXXXXXXX-ARSAATGMSGPSKYAPSXXXXSNHQDGVTHDLMSQYEPSVYEADXXXXXXXXXXXXXXGDESSSYSYNDGAGSRRGGYAGXXXXXX--RGGRHMSGRASVADTAAMSHLGSVMEMDDGGSAYAPSESYVSSYVSSEDDDGRPARSIHPRGGPNDAQAMGGVPTDGGXXXXXXXXXXXXYSRHNAHRSGRQPVASGRSGFGAXXXXXXXXXXXXXSGFEGGSRSYDDEDDESAVGRTAVSMDDLEYYSEDQNAGGMTSGRGAPLTDLEETHGGQRW 1150
BLAST of mRNA_E-siliculosus-1a_M_contig96.17611.1 vs. uniprot
Match: D8LQ65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ65_ECTSI) HSP 1 Score: 279 bits (714), Expect = 3.100e-83 Identity = 143/149 (95.97%), Postives = 144/149 (96.64%), Query Frame = 2
Query: 374 MADVERPTRRRGKMGGAARALALGLTIGGWASSQGLTAAASDLPAAVAAAGGLQECGFIVTMWGESAACEQQLDGAAVGCDKKSFSRRADRVQALVGSVPKEAGLGPVREAGSSEWRQVLDFGCVDGRDKLVVSLYDNLMRPLATCEVG 820
MADVERPTRRRGKMGGAARALALGLTIGGWASSQGL AAAS LPAA AAA G QECGFIVTMWGESAACEQQLDGAAVGCDKKSFSRRADRVQALVGSVPKEAGLGPVREAGSSEWRQVL+FGCVDGRDKLVVSLYDNLMRPLATCEVG
Sbjct: 1 MADVERPTRRRGKMGGAARALALGLTIGGWASSQGLAAAASHLPAAAAAAAGSQECGFIVTMWGESAACEQQLDGAAVGCDKKSFSRRADRVQALVGSVPKEAGLGPVREAGSSEWRQVLNFGCVDGRDKLVVSLYDNLMRPLATCEVG 149 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig96.17611.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig96.17611.1 >prot_E-siliculosus-1a_M_contig96.17611.1 ID=prot_E-siliculosus-1a_M_contig96.17611.1|Name=mRNA_E-siliculosus-1a_M_contig96.17611.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=1351bp MADVERPTRRRGKMGGAARALALGLTIGGWASSQGLTAAASDLPAAVAAAback to top mRNA from alignment at E-siliculosus-1a_M_contig96:504776..520308- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig96.17611.1 ID=mRNA_E-siliculosus-1a_M_contig96.17611.1|Name=mRNA_E-siliculosus-1a_M_contig96.17611.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=15533bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:504776..520308- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:504776..520308- >mRNA_E-siliculosus-1a_M_contig96.17611.1 ID=mRNA_E-siliculosus-1a_M_contig96.17611.1|Name=mRNA_E-siliculosus-1a_M_contig96.17611.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=8106bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:504776..520308- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |