mRNA_E-siliculosus-1a_M_contig96.17609.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig96.17609.1
Unique NamemRNA_E-siliculosus-1a_M_contig96.17609.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig96.17609.1 vs. uniprot
Match: D8LQ68_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ68_ECTSI)

HSP 1 Score: 417 bits (1071), Expect = 1.780e-133
Identity = 223/230 (96.96%), Postives = 224/230 (97.39%), Query Frame = 1 
Query:    1 AESRASSATGGVGAGDGARGSESSSSRRESPFLAAGVPPVPRAGTAVDRSSGSGPLFMDSFADVTRSSVLRASSTLNTIAPLDDTGPPLSYSSRMGVSFAGELFADSRLRASSGSYRAPRYDACATTQREGEQIRAGGSCGALPLPRAQQQQVSSQRQRRSWSAPTLFSEWSKKHGAEADRVVAPGGPQKENSLGLGGVPPDVVGAWLALAIEGIYSHNDSDGGVTDKRI 690
            AE RASSATGGVGAGD ARGSESSSSRRESPFLAAGVP VPRAGTAVDRSSGSGPLFMDSFADVTRSSVLRASSTLNTIAPLDDTGPPLSYSSR+GVSFAGELFADSRLRASSGSYRAPRYDACAT QREGEQ RAGGSCGALPLPRAQQQQVSSQRQRRSWSAPTLFSEWSKKHGAEADRVVAPGGPQKENSLGLGGVPPDVVGAWLALAIEGIYSHNDS GGVTDKRI
Sbjct:  978 AERRASSATGGVGAGDWARGSESSSSRRESPFLAAGVPRVPRAGTAVDRSSGSGPLFMDSFADVTRSSVLRASSTLNTIAPLDDTGPPLSYSSRIGVSFAGELFADSRLRASSGSYRAPRYDACATPQREGEQTRAGGSCGALPLPRAQQQQVSSQRQRRSWSAPTLFSEWSKKHGAEADRVVAPGGPQKENSLGLGGVPPDVVGAWLALAIEGIYSHNDSGGGVTDKRI 1207
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BLAST of mRNA_E-siliculosus-1a_M_contig96.17609.1 vs. uniprot
Match: A0A6H5L0S8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0S8_9PHAE)

HSP 1 Score: 389 bits (998), Expect = 3.950e-123
Identity = 212/230 (92.17%), Postives = 215/230 (93.48%), Query Frame = 1 
Query:    1 AESRASSATGGVGAGDGARGSESSSSRRESPFLAAGVPPVPRAGTAVDRSSGSGPLFMDSFADVTRSSVLRASSTLNTIAPLDDTGPPLSYSSRMGVSFAGELFADSRLRASSGSYRAPRYDACATTQREGEQIRAGGSCGALPLPRAQQQQVSSQRQRRSWSAPTLFSEWSKKHGAEADRVVAPGGPQKENSLGLGGVPPDVVGAWLALAIEGIYSHNDSDGGVTDKRI 690
            AE RASSATGGVGAGDGARGSESSSSRRESPFLAAGVPPVPRAGTAVDRSSGSGPLFMDSFADVTRSSVLRASSTLNTIAPLDDTGPPLSYSSR+GVSFAGELFADSRLRASSGS RAPRYDAC   QR GEQIRAG +C ALPLP AQQQ VSSQRQRRSWSAPTLFSEWSKKH  EADRVVAPGG QKEN LGLGGVPPDVVGAWLALAIEGIYSHNDS GGVTD+RI
Sbjct:  949 AERRASSATGGVGAGDGARGSESSSSRRESPFLAAGVPPVPRAGTAVDRSSGSGPLFMDSFADVTRSSVLRASSTLNTIAPLDDTGPPLSYSSRIGVSFAGELFADSRLRASSGSSRAPRYDACTPPQRAGEQIRAGENCCALPLPHAQQQ-VSSQRQRRSWSAPTLFSEWSKKHDTEADRVVAPGGAQKENLLGLGGVPPDVVGAWLALAIEGIYSHNDSGGGVTDERI 1177
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig96.17609.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQ68_ECTSI1.780e-13396.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0S8_9PHAE3.950e-12392.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig96contigE-siliculosus-1a_M_contig96:490238..490928 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size690
Model size692
Exons1
Ec32 orthologEc-26_005950.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936539.2842858-CDS-E-siliculosus-1a_M_contig96:490237..4909271622936539.2842858-CDS-E-siliculosus-1a_M_contig96:490237..490927Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 490238..490927 +
1696251122.1520734-CDS-E-siliculosus-1a_M_contig96:490237..4909271696251122.1520734-CDS-E-siliculosus-1a_M_contig96:490237..490927Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 490238..490927 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig96.17609.1prot_E-siliculosus-1a_M_contig96.17609.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig96 490238..490927 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig96.17609.1

>prot_E-siliculosus-1a_M_contig96.17609.1 ID=prot_E-siliculosus-1a_M_contig96.17609.1|Name=mRNA_E-siliculosus-1a_M_contig96.17609.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=230bp
AESRASSATGGVGAGDGARGSESSSSRRESPFLAAGVPPVPRAGTAVDRS
SGSGPLFMDSFADVTRSSVLRASSTLNTIAPLDDTGPPLSYSSRMGVSFA
GELFADSRLRASSGSYRAPRYDACATTQREGEQIRAGGSCGALPLPRAQQ
QQVSSQRQRRSWSAPTLFSEWSKKHGAEADRVVAPGGPQKENSLGLGGVP
PDVVGAWLALAIEGIYSHNDSDGGVTDKRI
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mRNA from alignment at E-siliculosus-1a_M_contig96:490238..490928+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig96.17609.1 ID=mRNA_E-siliculosus-1a_M_contig96.17609.1|Name=mRNA_E-siliculosus-1a_M_contig96.17609.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=691bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:490238..490928+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GCAGAGAGTCGAGCGTCAAGCGCTACCGGCGGGGTGGGAGCCGGCGATGG
GGCGCGGGGGTCAGAGTCCTCCTCAAGCCGGAGGGAGTCTCCGTTTCTCG
CCGCCGGCGTGCCGCCGGTTCCAAGGGCGGGGACAGCGGTAGACCGGAGC
TCGGGGAGCGGGCCGCTGTTCATGGACTCCTTCGCGGACGTGACGCGCTC
GTCGGTGCTCCGGGCGTCCAGCACCCTAAACACCATAGCCCCGCTGGACG
ACACCGGGCCGCCGTTGTCGTACAGCTCGCGGATGGGCGTTTCCTTCGCG
GGGGAGCTTTTCGCGGACTCGAGACTCCGGGCATCGTCGGGTTCTTACCG
AGCCCCTCGGTACGATGCCTGCGCTACTACCCAAAGGGAGGGCGAGCAAA
TCCGTGCCGGGGGAAGTTGCGGCGCTCTGCCGCTGCCCCGTGCGCAGCAG
CAACAAGTGTCTTCGCAGCGGCAGCGGCGGTCGTGGTCGGCTCCTACGCT
GTTCTCGGAGTGGTCGAAGAAGCACGGCGCCGAGGCAGATCGAGTCGTCG
CGCCGGGGGGGCCGCAAAAGGAAAACTCGCTTGGGCTTGGGGGAGTACCC
CCCGATGTGGTCGGGGCGTGGCTGGCGTTGGCGATCGAGGGAATCTACTC
CCACAATGATAGCGACGGAGGCGTAACGGACAAACGAATCG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:490238..490928+

>mRNA_E-siliculosus-1a_M_contig96.17609.1 ID=mRNA_E-siliculosus-1a_M_contig96.17609.1|Name=mRNA_E-siliculosus-1a_M_contig96.17609.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1380bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:490238..490928+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GCAGAGAGTCGAGCGTCAAGCGCTACCGGCGGGGTGGGAGCCGGCGATGG
GGCGCGGGGGTCAGAGTCCTCCTCAAGCCGGAGGGAGTCTCCGTTTCTCG
CCGCCGGCGTGCCGCCGGTTCCAAGGGCGGGGACAGCGGTAGACCGGAGC
TCGGGGAGCGGGCCGCTGTTCATGGACTCCTTCGCGGACGTGACGCGCTC
GTCGGTGCTCCGGGCGTCCAGCACCCTAAACACCATAGCCCCGCTGGACG
ACACCGGGCCGCCGTTGTCGTACAGCTCGCGGATGGGCGTTTCCTTCGCG
GGGGAGCTTTTCGCGGACTCGAGACTCCGGGCATCGTCGGGTTCTTACCG
AGCCCCTCGGTACGATGCCTGCGCTACTACCCAAAGGGAGGGCGAGCAAA
TCCGTGCCGGGGGAAGTTGCGGCGCTCTGCCGCTGCCCCGTGCGCAGCAG
CAACAAGTGTCTTCGCAGCGGCAGCGGCGGTCGTGGTCGGCTCCTACGCT
GTTCTCGGAGTGGTCGAAGAAGCACGGCGCCGAGGCAGATCGAGTCGTCG
CGCCGGGGGGGCCGCAAAAGGAAAACTCGCTTGGGCTTGGGGGAGTACCC
CCCGATGTGGTCGGGGCGTGGCTGGCGTTGGCGATCGAGGGAATCTACTC
CCACAATGATAGCGACGGAGGCGTAACGGACAAACGAATCGCAGAGAGTC
GAGCGTCAAGCGCTACCGGCGGGGTGGGAGCCGGCGATGGGGCGCGGGGG
TCAGAGTCCTCCTCAAGCCGGAGGGAGTCTCCGTTTCTCGCCGCCGGCGT
GCCGCCGGTTCCAAGGGCGGGGACAGCGGTAGACCGGAGCTCGGGGAGCG
GGCCGCTGTTCATGGACTCCTTCGCGGACGTGACGCGCTCGTCGGTGCTC
CGGGCGTCCAGCACCCTAAACACCATAGCCCCGCTGGACGACACCGGGCC
GCCGTTGTCGTACAGCTCGCGGATGGGCGTTTCCTTCGCGGGGGAGCTTT
TCGCGGACTCGAGACTCCGGGCATCGTCGGGTTCTTACCGAGCCCCTCGG
TACGATGCCTGCGCTACTACCCAAAGGGAGGGCGAGCAAATCCGTGCCGG
GGGAAGTTGCGGCGCTCTGCCGCTGCCCCGTGCGCAGCAGCAACAAGTGT
CTTCGCAGCGGCAGCGGCGGTCGTGGTCGGCTCCTACGCTGTTCTCGGAG
TGGTCGAAGAAGCACGGCGCCGAGGCAGATCGAGTCGTCGCGCCGGGGGG
GCCGCAAAAGGAAAACTCGCTTGGGCTTGGGGGAGTACCCCCCGATGTGG
TCGGGGCGTGGCTGGCGTTGGCGATCGAGGGAATCTACTCCCACAATGAT
AGCGACGGAGGCGTAACGGACAAACGAATC
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