mRNA_E-siliculosus-1a_M_contig96.17607.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig96.17607.1 vs. uniprot
Match: D8LQ69_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ69_ECTSI) HSP 1 Score: 1105 bits (2858), Expect = 0.000e+0 Identity = 610/646 (94.43%), Postives = 613/646 (94.89%), Query Frame = 1 Query: 1 MSSIGGLCLPDMVAAALAFLDGRSLTVFEAASKGSRQTVQDNPDLYKTLLLRQVDNVPRMASLPSEEGKRALMAWEEGDFQPILALVPRRAPPPRYLHRAAEAADGWTYVHGGHLQSGLSGDVWRFRMSDSKRRRGPDPREDETAVKLQWEQVWGGNDEEWAGETGSGTGXXXXXXXXXXXXXXXXXXWGHPSHAVPXXXXXXXXXXXXXXXXXDNVNHGPLPAAQMFAAPGQEVALGAAPAAADQAXXXXXXXXXXXXXXXXXHAAMFAANHGVLGAGFEDAGGGVDAAGXXXXXXXXAGSMACPRPRCAASWTALPGSNKIFLFGGQGSDNNFLGDLWCFHAGARGECRWEQLDQVREPRPSGDGXXXXXXXXXEEGHGDNDVGGPGTPWRVPAGRWGHTMVEHRGALYMFGGSSPGTAFAGLWSLDVSVSPCVWSLMTPGRNAVSLEEGGLAEAAGGERPAARGGHSATVVRDTLYVFGGNITQSMFRDLWAIDLPDCKAWRQVEETDDFPPARIGHSAVAVGNRILIFGGRNFKSGKKCVFTCGLSCFDVDLQAFVHFPHAEAFSRKSSQPRGMWYGLRMTGHAAMHCSRGLLIVGGMLPIGQSFTMRAWTLDVVTGCWGRKQQRRRRPRVLGNTPAGCAPS 1938
MSSIGGLCLPDMVAAALAFLDGRSLTVFEAASKGSRQTVQDNPDLYKTLLLRQVDNVPRMASLPSEEGKRALMAWEEGDF PILALVPRRAPPPRYLHRAAEAADGWTYVHGGHLQSGLSGDVWRFRMSDSKRRRGPDPREDETAVKLQWEQVWGGNDE+WA ETGS XXXXXXXXXXXXXXXXX WGHPSHAVP XX DNVNHGPLPAAQMFAAPGQE+ALGAAPAAADQAXXXXXXXXXXXXXXXXXHAAMFAANHGVLGAGFEDAGGGVDAAGXXXXXXXX MACPRPRCAASWTALPGSNKIFLFGGQGSDNNFLGDLWCFHAGARGECRWEQLDQVREPRPSGDGXXXXXXXXX E HGDNDVGGPG PWRVPAGRWGHTMVEHRGALYMFGGSSPGTAFAGLW LDVSVSPCVWSLMTPGR AVSLEEGGLAEAAGGERP ARGGHSATVVRDTLY+FGGNITQSMFRDLWAIDLPDCKAWRQVEETDDFPPARIGHSAVAVGNRILIFGGRNFKSG VFTCGLSCFDVDLQAFVHFPHAEAFSRKSSQPRGMWYGLRMTGHAAMHCSRGLLIVGGMLPIGQSFTMRAWTLDVVTGCWGRKQQRRRRPRVLGNTPAGCAPS
Sbjct: 1 MSSIGGLCLPDMVAAALAFLDGRSLTVFEAASKGSRQTVQDNPDLYKTLLLRQVDNVPRMASLPSEEGKRALMAWEEGDFLPILALVPRRAPPPRYLHRAAEAADGWTYVHGGHLQSGLSGDVWRFRMSDSKRRRGPDPREDETAVKLQWEQVWGGNDEDWARETGSXXXXXXXXXXXXXXXXXXXXSWGHPSHAVPPPDAAXXVAPAAPAP--DNVNHGPLPAAQMFAAPGQEIALGAAPAAADQAXXXXXXXXXXXXXXXXXHAAMFAANHGVLGAGFEDAGGGVDAAGXXXXXXXX--XMACPRPRCAASWTALPGSNKIFLFGGQGSDNNFLGDLWCFHAGARGECRWEQLDQVREPRPSGDGXXXXXXXXXXE-HGDNDVGGPGAPWRVPAGRWGHTMVEHRGALYMFGGSSPGTAFAGLWRLDVSVSPCVWSLMTPGRTAVSLEEGGLAEAAGGERPPARGGHSATVVRDTLYIFGGNITQSMFRDLWAIDLPDCKAWRQVEETDDFPPARIGHSAVAVGNRILIFGGRNFKSG---VFTCGLSCFDVDLQAFVHFPHAEAFSRKSSQPRGMWYGLRMTGHAAMHCSRGLLIVGGMLPIGQSFTMRAWTLDVVTGCWGRKQQRRRRPRVLGNTPAGCAPS 638
BLAST of mRNA_E-siliculosus-1a_M_contig96.17607.1 vs. uniprot
Match: A0A7S2FFH0_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FFH0_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 1.940e-15 Identity = 54/165 (32.73%), Postives = 79/165 (47.88%), Query Frame = 1 Query: 1384 RPAARGGHSATVVRDTLYVFGGNITQSMFRDLWAIDLPDCKA-----------------------WRQVEETDDFPPARIGHSAVAVGNRILIFGGRNFKSGKKCVFTCGLSCFDVDLQAFVHFPHAEAFSRKSSQPRGMWYGLRMTGHAAMHCSRGLLIVGGML 1809
+P+ RGGH+A ++ + +Y+FGGN + F D W IDL +A W ++ P ARIGHS VAV R++++GGRN+ + VF G+ FDVD Q + H EA P TGHAA+ G++ GG++
Sbjct: 12 KPSGRGGHTAVLIDNVMYIFGGNTVEESFDDHWRIDLNAVEADMLSADIDHTSLSAADGSQADNGWGRITPRGRPPQARIGHSCVAVARRMILYGGRNYINR---VFCSGVYMFDVDTQVWDHI---EAEGSSFVPPD-------RTGHAAISHCNGIIFFGGLV 163
BLAST of mRNA_E-siliculosus-1a_M_contig96.17607.1 vs. uniprot
Match: UPI00046235B3 (galactose oxidase n=1 Tax=Trametes versicolor (strain FP-101664) TaxID=717944 RepID=UPI00046235B3) HSP 1 Score: 84.0 bits (206), Expect = 7.670e-14 Identity = 50/144 (34.72%), Postives = 69/144 (47.92%), Query Frame = 1 Query: 1180 VPAGRWGHTMVEHRGALYMFGGSSPGTAFAGLWSLDVS--VSPCVWSLMTPGRNAVSLEEGGLAEAAGGERPAARGGHSATVVRDTLYVFGGNITQSMFRDLWAIDLPDCKAWRQVEETDDFPPARIGHSAVAVGNRILIFGGR 1605
P GR GHT+V +Y+FGG + G F +WS D+S +S W + P + G RP+ R GHS +D L +FGG + + D+WA D + W + P R GHSA VG+ + IFGGR
Sbjct: 64 APVGRLGHTVVMIGPRVYVFGGHAHGEFFNDIWSFDLSTLISKPAWEQLDPPK--------------GAPRPSRRSGHSCVAYKDQLIMFGGTDGKYHYNDIWAFDTRT-RTWSEFWCGGYIPSPREGHSAALVGDIVYIFGGR 192
BLAST of mRNA_E-siliculosus-1a_M_contig96.17607.1 vs. uniprot
Match: A0A1M2V5C3_TRAPU (Tip elongation aberrant protein 1 n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2V5C3_TRAPU) HSP 1 Score: 83.6 bits (205), Expect = 7.320e-13 Identity = 49/144 (34.03%), Postives = 69/144 (47.92%), Query Frame = 1 Query: 1180 VPAGRWGHTMVEHRGALYMFGGSSPGTAFAGLWSLDVS--VSPCVWSLMTPGRNAVSLEEGGLAEAAGGERPAARGGHSATVVRDTLYVFGGNITQSMFRDLWAIDLPDCKAWRQVEETDDFPPARIGHSAVAVGNRILIFGGR 1605
P GR GHT+V +Y+FGG + G F +WS D+S +S W + P + G RP+ R GHS +D L +FGG + + D+WA D + W + P R GHSA VG+ + +FGGR
Sbjct: 286 APVGRLGHTVVMIGPRVYVFGGHAHGEFFNDIWSFDLSTLISKPAWEQLDPPK--------------GAPRPSRRSGHSCVAYKDQLIMFGGTDGKYHYNDIWAFDTRT-RTWSEFWCGGYIPSPREGHSAAIVGDIVYVFGGR 414
BLAST of mRNA_E-siliculosus-1a_M_contig96.17607.1 vs. uniprot
Match: A0A0B2VBR1_TOXCA (Kelch domain-containing protein 3 n=2 Tax=Toxocara canis TaxID=6265 RepID=A0A0B2VBR1_TOXCA) HSP 1 Score: 77.4 bits (189), Expect = 3.540e-11 Identity = 58/163 (35.58%), Postives = 81/163 (49.69%), Query Frame = 1 Query: 1150 DVGGPGT--PWRVPAGRWGHTMVEHRGALYMFGG-SSPGTAFAGLWSLDVSVSPCVWSLMTPGRNAVSLEEGGLAEAAGGERPAARGGHSATVVRDTLYVFGG--NITQSMFRDLWAIDLPDCKAWRQVEETDDFPPARIGHSAVAVGNRILIFGGRNFKSGK 1623
D G T P P R+GHT+V ++G Y++GG + A A + D C WSL+ RN G P AR GHSA VV DT+YVFGG +Q R+ +A DL W ++ T P R H+A A+ N++ +FGGR+ + G+
Sbjct: 67 DTGSSATTQPIITPYQRYGHTVVAYKGKAYLWGGRNDEHGASAQMHIFDPET--CSWSLVE--RN--------------GPCPPARDGHSAVVVDDTMYVFGGFEEESQRFSRETYAFDL-QTHQWSEIRTTGVAPQWRDFHTACAINNKMYVFGGRSDQLGQ 210
BLAST of mRNA_E-siliculosus-1a_M_contig96.17607.1 vs. uniprot
Match: A0A1W5CVG2_9LECA (Kelch-type beta propeller n=2 Tax=Lasallia pustulata TaxID=136370 RepID=A0A1W5CVG2_9LECA) HSP 1 Score: 78.2 bits (191), Expect = 8.210e-11 Identity = 51/151 (33.77%), Postives = 72/151 (47.68%), Query Frame = 1 Query: 1162 PGTPWRVPAGRWGHTMVEHRGALYMFGGSSPGTAFAGLWSLDVSVSPCV---WSLMTPGRNAVSLEEGGLAEAAGGERPAARGGHSATVVRDTLYVFGGNITQSMFRDLWAIDLPDCKAWRQVEETDDFPPARIGHSAVAVGNRILIFGGR 1605
P P PAGR+GHT+ +Y+FGG G F L + D++ W ++ N +GG E G+ P AR H+ ++ LY+FGG F D+W+ D P W Q++ P R GHSA V + + IFGGR
Sbjct: 229 PSPPGPKPAGRYGHTLNILGSKIYIFGGQVEGYFFNDLLAFDLNALQSNMNRWEMLIQNSN-----DGGPPE---GQLPPARTNHTIISWKEKLYLFGGTNGTQWFNDVWSYD-PRVNGWTQLDCIGYIPATREGHSAALVNDVMYIFGGR 370
BLAST of mRNA_E-siliculosus-1a_M_contig96.17607.1 vs. uniprot
Match: A0A5N6KXJ8_9ROSI (Uncharacterized protein n=1 Tax=Carpinus fangiana TaxID=176857 RepID=A0A5N6KXJ8_9ROSI) HSP 1 Score: 77.4 bits (189), Expect = 1.390e-10 Identity = 69/232 (29.74%), Postives = 97/232 (41.81%), Query Frame = 1 Query: 916 PRPRCAASWTALPGSNKIFLFGGQGSDNNFLGDLWCFHAGA--RGECRWEQLDQVREPRPSGDGXXXXXXXXXEEGHGDNDVGGPGTPWRVPAGRWGHTMVEHRGALYMFGGSSPGTAFAGLWSLDVSVSPCVWSLMTPGRNAVSLEEGGLAEAAGGERPAARGGHSATVVRDTLYVFGGNITQSM-FRDLWAIDLPDCKAWRQVEETDDFPPARIGHSAVAVGNRILIFGG 1602
PRP T ++I++FGGQ + F DL F A + RWE L Q ++ GGP T +VP R HT++ H+ L +FGG+ T F +W + P RN+ L+E G PAAR GH+A +V DT+Y+FGG + DL A +P + W + P R GH VG I++ G
Sbjct: 223 PRPSGRYGHTLNILGSRIYVFGGQ-VEGYFFNDLVSFDLNALQQPNNRWEILIQ------------------------NSSDGGPPTG-QVPPARTNHTVITHQERLLLFGGTDGNTWFNDVWVYE------------PERNSWYLQE------CIGYIPAAREGHAAALVGDTMYIFGGRTEEGKDLGDLAAFRIPT-RRWYTFQNMGPSPSPRSGHGMTTVGTNIVVLAG 409
BLAST of mRNA_E-siliculosus-1a_M_contig96.17607.1 vs. uniprot
Match: A0A7R8XGY3_9CRUS (Hypothetical protein (Fragment) n=1 Tax=Darwinula stevensoni TaxID=69355 RepID=A0A7R8XGY3_9CRUS) HSP 1 Score: 75.1 bits (183), Expect = 4.870e-10 Identity = 52/151 (34.44%), Postives = 76/151 (50.33%), Query Frame = 1 Query: 1177 RVPAGRWGHTMVEHRGALYMFGGSSPGTAFAGLWSLDVSVSPCVWSLMTPGRNAVSLEEGGLAEAAGGERPAARGGHSATVVRDTLYVFGG--NITQSMFRDLWAIDLPDCKAWRQVEETDDFPPARIG-HSAVAVGNRILIFGGRNFKSG 1620
RVP R+GHT+VEH G +Y++GG + A L+ D WS + A G+ P AR GHSA ++RD +Y+FGG +Q+ RDL +DL + T+ PP + HS A+G+ + +FGGR +G
Sbjct: 70 RVPFRRYGHTVVEHLGKVYLWGGRNDERACNVLYCFDTKRHS--WS----------------SPAVLGQIPGARDGHSAAILRDGMYIFGGFEEESQTFSRDLHRLDLMTFTWTLVMVTTNGSPPKNLDFHSCTALGDCLYVFGGRGDIAG 202
BLAST of mRNA_E-siliculosus-1a_M_contig96.17607.1 vs. uniprot
Match: A0A8K1FH29_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FH29_PYTOL) HSP 1 Score: 75.5 bits (184), Expect = 6.320e-10 Identity = 53/170 (31.18%), Postives = 76/170 (44.71%), Query Frame = 1 Query: 1153 VGGPGTPWRVPAGRWGHTMVEHRGALYMFGGSSPGTAFAGLWSLDVSVSPCVWSLMTPGRNAVSLEEGGLAEAAGGERPAARGGHSATVVRDTLYVFGG----NITQSMFRDLWAIDLPDCKAWRQVEETDDFPPARIGHSAVAVGNRILIFGGRNFKSGKKCVFTCGLS 1650
+ G TP +P RW HT V + +FGG + +W D + VW ++A EG P RG H+ATVV + +YVFGG + F DL A+DL K W +++ + P R GH V N++ + GG N + +F C LS
Sbjct: 76 IPGHSTPEDLPPPRWRHTAVLFEKRIIVFGGFAAEKRMNDVWVFDTELR--VWEQ----QHAHGFWEG---------LPQCRGAHTATVVGEKMYVFGGYGGNGYGRMDFNDLHALDLVHWK-WEEIQTEGERPEPRSGHQTCYVDNKLFVIGGWNSMKQFQDIFVCDLS 229
BLAST of mRNA_E-siliculosus-1a_M_contig96.17607.1 vs. uniprot
Match: L8GGS1_ACACA (Kelch repeat protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GGS1_ACACA) HSP 1 Score: 74.3 bits (181), Expect = 1.050e-9 Identity = 55/163 (33.74%), Postives = 76/163 (46.63%), Query Frame = 1 Query: 1183 PAGRWGHTMVEHRGALYMFGGSSPGTAFAGLWSLD-VSVSPCVWS-LMTPGRNAVSLEEGGLAEAAGGERPAARGGHSATVVRDTLYVFGGNI-TQSMFRDLWAIDLPDCKAWRQVEETDDFPPARIGHSAVAVGNRILIFGGRNFKSGKKCVFTCGLSCFDV 1662
P R GH+ V + + ++GG G + +W LD VSV WS TP A GG+ P R GH++ ++ D +++FGG DLW DL K W ++ P R GH+AVA G IL+FGG + S +C L CFD
Sbjct: 152 PQSRRGHSCVRYDNFMIVYGGYR-GRPLSDMWVLDTVSVR---WSRFQTP------------TSAHGGKHPGQRTGHASVIIGDKMWLFGGETENHKCVNDLWVFDL-GLKKWEEIITAGSLPSPRYGHTAVAFGTSILLFGGADRSS--ECFHD--LWCFDT 293 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig96.17607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig96.17607.1 >prot_E-siliculosus-1a_M_contig96.17607.1 ID=prot_E-siliculosus-1a_M_contig96.17607.1|Name=mRNA_E-siliculosus-1a_M_contig96.17607.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=647bp MSSIGGLCLPDMVAAALAFLDGRSLTVFEAASKGSRQTVQDNPDLYKTLLback to top mRNA from alignment at E-siliculosus-1a_M_contig96:479819..485530- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig96.17607.1 ID=mRNA_E-siliculosus-1a_M_contig96.17607.1|Name=mRNA_E-siliculosus-1a_M_contig96.17607.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=5712bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:479819..485530- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:479819..485530- >mRNA_E-siliculosus-1a_M_contig96.17607.1 ID=mRNA_E-siliculosus-1a_M_contig96.17607.1|Name=mRNA_E-siliculosus-1a_M_contig96.17607.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=3882bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:479819..485530- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |