Homology
BLAST of mRNA_E-siliculosus-1a_M_contig96.17603.1 vs. uniprot
Match:
D7FWI9_ECTSI (Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7FWI9_ECTSI)
HSP 1 Score: 229 bits (583), Expect = 9.030e-76
Identity = 121/122 (99.18%), Postives = 122/122 (100.00%), Query Frame = 1
Query: 1 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKRGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVKK 366
MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLK+GKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVKK
Sbjct: 1 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVKK 122
BLAST of mRNA_E-siliculosus-1a_M_contig96.17603.1 vs. uniprot
Match:
D7G193_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G193_ECTSI)
HSP 1 Score: 227 bits (578), Expect = 3.130e-74
Identity = 120/121 (99.17%), Postives = 121/121 (100.00%), Query Frame = 1
Query: 1 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKRGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVK 363
MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLK+GKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVK
Sbjct: 46 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVK 166
BLAST of mRNA_E-siliculosus-1a_M_contig96.17603.1 vs. uniprot
Match:
A0A6H5KG79_9PHAE (Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG79_9PHAE)
HSP 1 Score: 214 bits (545), Expect = 8.630e-70
Identity = 111/119 (93.28%), Postives = 118/119 (99.16%), Query Frame = 1
Query: 1 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKRGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKT 357
MSGKGKGGRGKKST++S+KAGLQFPV R+GR+LKRGKYA+RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK+
Sbjct: 1 MSGKGKGGRGKKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKS 119
BLAST of mRNA_E-siliculosus-1a_M_contig96.17603.1 vs. uniprot
Match:
D7FVQ5_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ5_ECTSI)
HSP 1 Score: 214 bits (545), Expect = 4.470e-69
Identity = 111/119 (93.28%), Postives = 118/119 (99.16%), Query Frame = 1
Query: 1 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKRGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKT 357
MSGKGKGGRGKKST++S+KAGLQFPV R+GR+LKRGKYA+RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK+
Sbjct: 52 MSGKGKGGRGKKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKS 170
BLAST of mRNA_E-siliculosus-1a_M_contig96.17603.1 vs. uniprot
Match:
D8LLP0_ECTSI (Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLP0_ECTSI)
HSP 1 Score: 208 bits (530), Expect = 9.900e-68
Identity = 106/118 (89.83%), Postives = 115/118 (97.46%), Query Frame = 1
Query: 1 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKRGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 354
MSGKGKGGRGKK T+RSAKAGLQFPVGR+GRF+K+GKY+SRVG GAPVY+AAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELN+LLG+ TIASGGVLPNIHAVLLPKK
Sbjct: 1 MSGKGKGGRGKKITSRSAKAGLQFPVGRIGRFIKQGKYSSRVGGGAPVYMAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNRLLGDATIASGGVLPNIHAVLLPKK 118
BLAST of mRNA_E-siliculosus-1a_M_contig96.17603.1 vs. uniprot
Match:
A0A6H5KGY1_9PHAE (Integrase catalytic domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGY1_9PHAE)
HSP 1 Score: 225 bits (573), Expect = 7.950e-66
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 1
Query: 1 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKRGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTV 360
MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLK+GKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTV
Sbjct: 1 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTV 120
BLAST of mRNA_E-siliculosus-1a_M_contig96.17603.1 vs. uniprot
Match:
A0A6U2JFS4_9STRA (Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 RepID=A0A6U2JFS4_9STRA)
HSP 1 Score: 201 bits (511), Expect = 8.610e-65
Identity = 105/122 (86.07%), Postives = 116/122 (95.08%), Query Frame = 1
Query: 1 MSGKGKGGRG-KKSTTRSAKAGLQFPVGRVGRFLKRGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVK 363
MSGKGKGGRG KKSTT SAKAGLQFPVGR+GR+L++GKYA+R+GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RI+PRHI LAV+NDEELNKLLG VTIASGGVLPNIHAVLLPKK+ K
Sbjct: 1 MSGKGKGGRGGKKSTTSSAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAVLLPKKSAK 122
BLAST of mRNA_E-siliculosus-1a_M_contig96.17603.1 vs. uniprot
Match:
A0A448ZH28_9STRA (Histone H2A n=12 Tax=Bacillariophyta TaxID=2836 RepID=A0A448ZH28_9STRA)
HSP 1 Score: 199 bits (507), Expect = 3.510e-64
Identity = 104/122 (85.25%), Postives = 116/122 (95.08%), Query Frame = 1
Query: 1 MSGKGKGGRG-KKSTTRSAKAGLQFPVGRVGRFLKRGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVK 363
MSGKGKGGRG KKSTT SAKAGLQFPVGR+GR+L++GKYA+R+GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RI+PRHI LAV+NDEELNKLLG VTIASGGVLPNIHA+LLPKK+ K
Sbjct: 1 MSGKGKGGRGEKKSTTASAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAILLPKKSGK 122
BLAST of mRNA_E-siliculosus-1a_M_contig96.17603.1 vs. uniprot
Match:
A0A836CG77_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG77_9STRA)
HSP 1 Score: 199 bits (505), Expect = 8.880e-64
Identity = 105/122 (86.07%), Postives = 114/122 (93.44%), Query Frame = 1
Query: 1 MSGKGKGGRG---KKSTTRSAKAGLQFPVGRVGRFLKRGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKT 357
M+GKGKGGRG KKST++S+KAGLQFPV R+GRFLK G+YA RVGAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RI+PRHIQLAVRNDEELNKLLG VTIASGGVLPNIHAVLLPKKT
Sbjct: 1 MAGKGKGGRGAEAKKSTSKSSKAGLQFPVARLGRFLKVGRYAERVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHIQLAVRNDEELNKLLGNVTIASGGVLPNIHAVLLPKKT 122
BLAST of mRNA_E-siliculosus-1a_M_contig96.17603.1 vs. uniprot
Match:
A0A7S2GRL8_9STRA (Histone H2A n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GRL8_9STRA)
HSP 1 Score: 199 bits (505), Expect = 1.040e-63
Identity = 102/118 (86.44%), Postives = 112/118 (94.92%), Query Frame = 1
Query: 1 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKRGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 354
MSGKGKGGRGKKSTT SAKAGLQFPVGR+GR+LK+GK+A+R+GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RI PRHI LAV+NDEELNKLLG VTIA GGVLPNIH+VLLPKK
Sbjct: 1 MSGKGKGGRGKKSTTSSAKAGLQFPVGRIGRYLKQGKFATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIAPRHITLAVKNDEELNKLLGGVTIAGGGVLPNIHSVLLPKK 118
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig96.17603.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90 )
Total hits: 25
0 1 Expect = 9.03e-76 / Id = 99.18 Expect = 3.13e-74 / Id = 99.17 Expect = 8.63e-70 / Id = 93.28 Expect = 4.47e-69 / Id = 93.28 Expect = 9.90e-68 / Id = 89.83 Expect = 7.95e-66 / Id = 99.17 Expect = 8.61e-65 / Id = 86.07 Expect = 3.51e-64 / Id = 85.25 Expect = 8.88e-64 / Id = 86.07 Expect = 1.04e-63 / Id = 86.44 Sequence D7FWI9_ECTSI D7G193_ECTSI A0A6H5KG79_9PHAE D7FVQ5_ECTSI D8LLP0_ECTSI A0A6H5KGY1_9PHAE A0A6U2JFS4_9STRA A0A448ZH28_9STRA A0A836CG77_9STRA A0A7S2GRL8_9STRA Pages
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Start 1 Stop 1 Cds size 369 Model size 369 Exons 1 Hectar predicted targeting category other localisation BRITE ko00000,ko00001,ko00536,ko03036,ko04147 Best eggNOG OG NA|NA|NA Best tax level Eukaryota COG Functional cat. B Ec32 ortholog Ec-26_005860.1 Ec32 ortholog description Histone H2A EggNOG OGs COG5262@1,KOG1756@2759 EggNOG free text desc. Histone H2A GOs GO:0000122,GO:0000182,GO:0000228,GO:0000775,GO:0000785,GO:0000786,GO:0000790,GO:0000792,GO:0000793,GO:0000803,GO:0000805,GO:0000976,GO:0000977,GO:0000979,GO:0001012,GO:0001046,GO:0001047,GO:0001067,GO:0001739,GO:0001740,GO:0001932,GO:0001933,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003690,GO:0004857,GO:0004860,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005720,GO:0005721,GO:0005730,GO:0005813,GO:0005815,GO:0005856,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006342,GO:0006355,GO:0006356,GO:0006357,GO:0006469,GO:0006996,GO:0007063,GO:0007088,GO:0007275,GO:0007346,GO:0007399,GO:0007417,GO:0007420,GO:0007549,GO:0008104,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010385,GO:0010468,GO:0010556,GO:0010558,GO:0010563,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0010639,GO:0010948,GO:0015630,GO:0016043,GO:0016458,GO:0016479,GO:0019207,GO:0019210,GO:0019216,GO:0019219,GO:0019220,GO:0019222,GO:0019887,GO:0019899,GO:0019900,GO:0019901,GO:0022607,GO:0030234,GO:0030291,GO:0030856,GO:0030858,GO:0031056,GO:0031057,GO:0031060,GO:0031061,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031399,GO:0031400,GO:0031490,GO:0031491,GO:0031492,GO:0031497,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0032991,GO:0032993,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033127,GO:0033128,GO:0033365,GO:0033673,GO:0034091,GO:0034093,GO:0034182,GO:0034184,GO:0034502,GO:0034613,GO:0034622,GO:0034728,GO:0040029,GO:0042325,GO:0042326,GO:0043086,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043549,GO:0043565,GO:0043933,GO:0044085,GO:0044092,GO:0044212,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0044877,GO:0045184,GO:0045595,GO:0045597,GO:0045604,GO:0045606,GO:0045616,GO:0045618,GO:0045682,GO:0045684,GO:0045786,GO:0045787,GO:0045814,GO:0045815,GO:0045840,GO:0045859,GO:0045876,GO:0045892,GO:0045931,GO:0045934,GO:0045936,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0051094,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051276,GO:0051338,GO:0051348,GO:0051569,GO:0051572,GO:0051641,GO:0051726,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060255,GO:0060322,GO:0060341,GO:0061085,GO:0061086,GO:0062033,GO:0065003,GO:0065004,GO:0065007,GO:0065009,GO:0070013,GO:0070199,GO:0070727,GO:0071103,GO:0071168,GO:0071169,GO:0071824,GO:0071840,GO:0071900,GO:0071901,GO:0072594,GO:0080090,GO:0080134,GO:0090068,GO:0097159,GO:0098687,GO:0098772,GO:1901363,GO:1901836,GO:1901837,GO:1901987,GO:1901988,GO:1902275,GO:1902679,GO:1902749,GO:1902750,GO:1902882,GO:1902883,GO:1902884,GO:1903506,GO:1903507,GO:1903827,GO:1903828,GO:1904814,GO:1904815,GO:1905268,GO:1990837,GO:1990841,GO:2000026,GO:2000112,GO:2000113,GO:2001141,GO:2001251,GO:2001252 KEGG Pathway ko04217,ko04974,ko05034,ko05322,map04217,map04974,map05034,map05322 KEGG ko ko:K11251,ko:K16617 Preferred name H2AFY Seed eggNOG ortholog 2880.D8LQ28 Seed ortholog evalue 9.6e-59 Seed ortholog score 232.6 Taxonomic scope Eukaryota
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622936537.0296853-CDS-E-siliculosus-1a_M_contig96:458090..458459 1622936537.0296853-CDS-E-siliculosus-1a_M_contig96:458090..458459 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig96 458091..458459 - 1696251121.7447212-CDS-E-siliculosus-1a_M_contig96:458090..458459 1696251121.7447212-CDS-E-siliculosus-1a_M_contig96:458090..458459 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig96 458091..458459 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig96.17603.1
>prot_E-siliculosus-1a_M_contig96.17603.1 ID=prot_E-siliculosus-1a_M_contig96.17603.1|Name=mRNA_E-siliculosus-1a_M_contig96.17603.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=123bp
MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKRGKYASRVGAGAPVYL back to top mRNA from alignment at E-siliculosus-1a_M_contig96:458091..458459-
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig96.17603.1 ID=mRNA_E-siliculosus-1a_M_contig96.17603.1|Name=mRNA_E-siliculosus-1a_M_contig96.17603.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=369bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:458091..458459- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)ATGTCCGGAAAGGGAAAGGGAGGCCGCGGAAAGAAGTCGACCACCAGGTC
GGCCAAGGCTGGACTGCAGTTCCCTGTGGGCCGTGTTGGTCGGTTCCTCA
AGAGGGGCAAGTACGCGTCCCGCGTGGGAGCTGGAGCTCCGGTGTACCTG
GCCGCCGTGCTGGAGTACCTGACCGCCGAGGTGCTTGAGCTGGCGGGCAA
CGCTGCCCGCGACAACAAGAAGGCCCGCATCATCCCCCGCCACATCCAGC
TGGCCGTCCGCAACGACGAGGAGCTGAACAAGCTTCTCGGAGAGGTGACG
ATCGCGTCCGGCGGTGTGCTGCCCAACATCCACGCCGTGCTCCTCCCGAA
GAAGACCGTGAAGAAATAA back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:458091..458459-
>mRNA_E-siliculosus-1a_M_contig96.17603.1 ID=mRNA_E-siliculosus-1a_M_contig96.17603.1|Name=mRNA_E-siliculosus-1a_M_contig96.17603.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=738bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:458091..458459- (Ectocarpus siliculosus Ec864m_EcPH12_78m male) back to top