mRNA_E-siliculosus-1a_M_contig96.17596.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig96.17596.1
Unique NamemRNA_E-siliculosus-1a_M_contig96.17596.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig96.17596.1 vs. uniprot
Match: D8LQ80_ECTSI (Histone H1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ80_ECTSI)

HSP 1 Score: 154 bits (389), Expect = 8.590e-41
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1 
Query:    1 MASTKPTYNAMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFIKMKASYKLSAEAKKPAPK 240
            MASTKPTYNAMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFIKMKASYKLSAEAKKPAPK
Sbjct:    1 MASTKPTYNAMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFIKMKASYKLSAEAKKPAPK 80
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig96.17596.1 vs. uniprot
Match: A0A6H5KCU1_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCU1_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 1.790e-34
Identity = 72/77 (93.51%), Postives = 73/77 (94.81%), Query Frame = 1 
Query:    7 STKPTYNAMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFIKMKASYKLSAEAKKPAP 237
            + KPTYN MVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMR ALKKGVESGKFIKMKASYKLS EAKKPAP
Sbjct:   96 TAKPTYNVMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRGALKKGVESGKFIKMKASYKLSPEAKKPAP 172
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig96.17596.1 vs. uniprot
Match: A0A6H5KST0_9PHAE (H15 domain-containing protein n=6 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KST0_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 4.200e-33
Identity = 69/70 (98.57%), Postives = 70/70 (100.00%), Query Frame = 1 
Query:   31 MVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFIKMKASYKLSAEAKKPAPK 240
            MVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKF+KMKASYKLSAEAKKPAPK
Sbjct:    1 MVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFVKMKASYKLSAEAKKPAPK 70
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig96.17596.1 vs. uniprot
Match: D8LQ75_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ75_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 8.490e-30
Identity = 64/70 (91.43%), Postives = 68/70 (97.14%), Query Frame = 1 
Query:   31 MVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFIKMKASYKLSAEAKKPAPK 240
            MVFDAIK+LKERNGSSIQAIKKSITATYP LNFTPHQMRSALKKGVE+GKFIK+K+SYKLSAEAKKP PK
Sbjct:    1 MVFDAIKSLKERNGSSIQAIKKSITATYPALNFTPHQMRSALKKGVETGKFIKVKSSYKLSAEAKKPVPK 70
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig96.17596.1 vs. uniprot
Match: D7G4I5_ECTSI (H15 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4I5_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 1.270e-28
Identity = 63/79 (79.75%), Postives = 70/79 (88.61%), Query Frame = 1 
Query:    1 MAST-KPTYNAMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFIKMKASYKLSAEAKKPA 234
            MA+T KPTY+ MVFDAIK LKER GSS+ A+KK I ATYP+LNFTPHQMRSALKKG ESGKFIK+K+SYKLS EAKKPA
Sbjct:    1 MATTAKPTYSVMVFDAIKALKERGGSSLPALKKQIMATYPSLNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKPA 79
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig96.17596.1 vs. uniprot
Match: A0A6H5JHR9_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHR9_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 3.340e-25
Identity = 56/68 (82.35%), Postives = 61/68 (89.71%), Query Frame = 1 
Query:   31 MVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFIKMKASYKLSAEAKKPA 234
            MVFDAIK LKER GSS+ A+KK I ATYP+LNFTPHQMRSALKKG ESGKFIK+K+SYKLS EAKKPA
Sbjct:    1 MVFDAIKALKERGGSSLPALKKQIMATYPSLNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKPA 68
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig96.17596.1 vs. uniprot
Match: A0A6H5K9S6_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9S6_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 6.800e-22
Identity = 50/61 (81.97%), Postives = 57/61 (93.44%), Query Frame = 1 
Query:   31 MVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFIKMKASYKLS 213
            MVFDAIKTLKERNGSSIQA+KKSITATYP L+FTPHQMRSALKKGVE+GKFIK++ +  L+
Sbjct:    1 MVFDAIKTLKERNGSSIQAMKKSITATYPALHFTPHQMRSALKKGVETGKFIKVRHALPLA 61
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig96.17596.1 vs. uniprot
Match: D8LMF1_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMF1_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 1.510e-21
Identity = 52/72 (72.22%), Postives = 58/72 (80.56%), Query Frame = 1 
Query:   16 PTYNAMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFIKMKASYKLSAEAKKP 231
            PTY+ M   AI  LKERNGSS+ AIKK I ATYPTLNF PHQ+R ALKKG E+G FIK+KASYK+S EAKKP
Sbjct:    2 PTYSEMAKVAILALKERNGSSVPAIKKHIQATYPTLNFLPHQLRGALKKGTETGTFIKVKASYKVSPEAKKP 73
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig96.17596.1 vs. uniprot
Match: D8LJB8_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJB8_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 2.500e-20
Identity = 53/75 (70.67%), Postives = 62/75 (82.67%), Query Frame = 1 
Query:   16 PTYNAMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFIKMKASYKLSAEAKKPAPK 240
            PTY+ M  +A+K LKERNGSS+ AIKK ITA+YP+L FT H MRSALKKGVESGKFIK+K SYKLSA  ++PA K
Sbjct:    2 PTYDEMTIEAVKALKERNGSSLFAIKKHITASYPSLTFTAHFMRSALKKGVESGKFIKVKNSYKLSAYRQEPAAK 76
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig96.17596.1 vs. uniprot
Match: A0A6H5JIM8_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM8_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.660e-18
Identity = 49/67 (73.13%), Postives = 57/67 (85.07%), Query Frame = 1 
Query:   16 PTYNAMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFIKMKASYKLSA 216
            PTY+ M  +A+K LKERNGSS+ AIKK ITA+YP+L FT H +RSALKKGVESGKFIK+K SYKLSA
Sbjct:    2 PTYDEMTVEAVKALKERNGSSLFAIKKHITASYPSLTFTGHFLRSALKKGVESGKFIKVKNSYKLSA 68
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig96.17596.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ80_ECTSI8.590e-41100.00Histone H1 n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5KCU1_9PHAE1.790e-3493.51H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KST0_9PHAE4.200e-3398.57H15 domain-containing protein n=6 Tax=Ectocarpus T... [more]
D8LQ75_ECTSI8.490e-3091.43H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G4I5_ECTSI1.270e-2879.75H15 domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6H5JHR9_9PHAE3.340e-2582.35H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K9S6_9PHAE6.800e-2281.97H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LMF1_ECTSI1.510e-2172.22H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LJB8_ECTSI2.500e-2070.67H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JIM8_9PHAE1.660e-1873.13H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig96contigE-siliculosus-1a_M_contig96:415048..418162 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size489
Model size1830
Exons3
Ec32 orthologEc-26_005830.1
Ec32 ortholog descriptionHistone H1
Hectar predicted targeting categoryother localisation
BRITEko00000,ko03036
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.B
EggNOG OGs2CYYI@1,2S79K@2759
EggNOG free text desc.Domain in histone families 1 and 5
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044424,GO:0044464
KEGG koko:K11275
Preferred nameH1
Seed eggNOG ortholog2880.D7G189
Seed ortholog evalue8.3e-34
Seed ortholog score150.2
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig96.17596.1prot_E-siliculosus-1a_M_contig96.17596.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig96 415048..416821 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936536.059544-CDS-E-siliculosus-1a_M_contig96:415047..4150771622936536.059544-CDS-E-siliculosus-1a_M_contig96:415047..415077Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 415048..415077 +
1696251121.5533044-CDS-E-siliculosus-1a_M_contig96:415047..4150771696251121.5533044-CDS-E-siliculosus-1a_M_contig96:415047..415077Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 415048..415077 +
1622936536.0779111-CDS-E-siliculosus-1a_M_contig96:415495..4156541622936536.0779111-CDS-E-siliculosus-1a_M_contig96:415495..415654Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 415496..415654 +
1696251121.5668356-CDS-E-siliculosus-1a_M_contig96:415495..4156541696251121.5668356-CDS-E-siliculosus-1a_M_contig96:415495..415654Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 415496..415654 +
1622936536.0909245-CDS-E-siliculosus-1a_M_contig96:416521..4168211622936536.0909245-CDS-E-siliculosus-1a_M_contig96:416521..416821Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 416522..416821 +
1696251121.5780008-CDS-E-siliculosus-1a_M_contig96:416521..4168211696251121.5780008-CDS-E-siliculosus-1a_M_contig96:416521..416821Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 416522..416821 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936536.1020908-UTR-E-siliculosus-1a_M_contig96:416821..4181621622936536.1020908-UTR-E-siliculosus-1a_M_contig96:416821..418162Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig96 416822..418162 +
1696251121.5884926-UTR-E-siliculosus-1a_M_contig96:416821..4181621696251121.5884926-UTR-E-siliculosus-1a_M_contig96:416821..418162Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig96 416822..418162 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig96.17596.1

>prot_E-siliculosus-1a_M_contig96.17596.1 ID=prot_E-siliculosus-1a_M_contig96.17596.1|Name=mRNA_E-siliculosus-1a_M_contig96.17596.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=163bp
MASTKPTYNAMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRS
ALKKGVESGKFIKMKASYKLSAEAKKPAPKKKVVKKKVVKKVVKKKVPKK
KVAKKPAVKKTTTKKPAAKKATTTKKTVTKKKPTTAKKPAAKKTTTKKKP
STPKKKAAPKKA*
back to top

mRNA from alignment at E-siliculosus-1a_M_contig96:415048..418162+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig96.17596.1 ID=mRNA_E-siliculosus-1a_M_contig96.17596.1|Name=mRNA_E-siliculosus-1a_M_contig96.17596.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3115bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:415048..418162+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGCCTCCACCAAGCCCACGTACAATGCGGTAAGACGACGGATCCGCGA
TGAAAAAATCCACGCCAGACATCGGTACCCAGCACTCTAGATTCTTTTGT
GTTTTTTTGTTTTTCGTGGGCGAAGTTGGAGGGGCATCTGTCGTTCGTTC
TGTCTTCGCGCATTTCGTGTTACCATGTGTCAGTGCGTTGATTGCCATCA
CCGACTTGGTCTTCTCGACGCAAATCTTCTCACAGCCTGATCCGGGATCA
GCCAGTCCTTGTTTTGTGCCTGATCCGACGCTGCAACTCACCTGCTGCTT
TTTTCCCAAAAAAAATGGTGCTTCGAAACCACAACTGAAACGCATCTGTT
GCGGGCGGGGGTTGACTAAGCCATGGCCGCTGCGCGCTCTCCCTGCTGCT
GTTACGCGTCCTTGACACCGTCCGCATCCTTGCGCCCGTCCCCTTCAGAT
GGTATTTGATGCCATCAAGACCCTCAAGGAGCGTAACGGATCCTCCATCC
AGGCGATCAAGAAGAGCATCACCGCCACCTACCCTACCCTCAACTTCACG
CCGCACCAGATGCGCAGCGCCCTCAAGAAGGGAGTTGAGTCCGGCAAGTT
CATCAAGGTGAGACACGCCACCTACGAGGAAACGGCCAAAATGTGTTCTC
AGGAAACCTTCACCCTTTCACGCTTTCTATATCCCACGCCTGTACTACAA
TCCCACCTTTTCGATGTGCCTTTTTTTCGTGTTTTGGAGAGCTACGTGCC
ACGTGGACACAATATTACCCTTCGACCAATCACAAAGCGAGAGTATTCGC
CGGCTTTCCCTTACTTTTCGTGTGCACATCGTATCGTTGTGTTCCTCCCT
CTTATTCGAGGCTTACCTCTCTTGTTTATGCTCCCCGAGTTTTAGTGTAG
TTGACCCTTGTATTGCTCTCTATTTCTCCCACCGCTGGGTGAGGTCGAGA
CGAAACATGCATATCGTCTGCCCCTTTGTTTCAAGTCTACTGCTGCATCT
CTATTTTGTCGCGTTGCCAAAGATTGATCGTACGTCAAAGCGGAACAGCT
CTTCACGCACGCCCCCCGATCATGTAGCGTTTACGTAGCATTCGTCGTCG
TGTGGTTGTGTCTAAGCGTTTGATTTGTGAAGGTTAGCCTGCGCCATACC
TCGTCGTAGTTGTTGCACCGCTATCCTCGTGAAATCGCTGCTGAGGATAA
GACACCTGTACATCGCGAGGCGTGGAGGTGTGCGTCTCTTCTGTAGGATG
CCTGCAGCATGGTTGATGGATGGCACGGCGGTGGTGCATTGCACCACGAA
CCATGATATGCAGAACATACCAGGTGTAGGTGGTTTGAGTGTCGTTTAAA
TATAAATATATGTAGAGAACGCTGTGTAAAAAGACTGCTTCGAAGTGCCG
CTGCATTTTTTTTCGAAACCTCACGGCCATGTCCTGCGTTCCCTGTCTAT
TCCGTGATGCAACACACCCACTAGATGAAGGCCTCTTACAAGCTGAGCGC
CGAGGCGAAGAAGCCCGCCCCCAAGAAGAAGGTAGTGAAAAAGAAGGTGG
TGAAGAAGGTCGTCAAGAAGAAGGTGCCGAAGAAGAAGGTGGCCAAGAAG
CCCGCTGTGAAGAAGACCACGACGAAGAAGCCCGCCGCCAAGAAGGCCAC
CACCACCAAGAAGACCGTCACCAAGAAGAAGCCCACCACCGCCAAGAAGC
CCGCGGCTAAGAAGACCACCACCAAGAAGAAGCCCTCCACCCCCAAGAAG
AAGGCTGCCCCCAAGAAGGCCTAAGCTCAACCATCTCCAAAGCTGGCGAG
GTTTCACATCTTCTCTCACCCGCACCCTCTCATGTTGGGTTCGACTCTCC
CAGCAAAAACGCCACTGGTGTTTACTCAACACCACCCATCCGACCAAAGA
ATGAAAAGCAATCGCAAAGTGAGCGCGTTATCACTTGCGATAGCGATGGG
TTCCAAAAGTTGCCCATCGAGCAGATATGGCGGCAACGCATCGCACTCTT
GTCATGGAATTACTTCACATGAAGGTTCACCAGTGTCGTTGCTGTACCTA
TTTTTGTGTGGATGATCGTGATGGACAGAGATCTTGTGGTAATTTTGAAG
CGAAACAAATTTAATGGCTGTCTTGCAAGGTTATGTGTGTGTGTGGTACT
TGTTCGTGGCGCCTTGTGCAGATCTTAGGTGTTGGTGTGATTATTGTTGA
TAATTTTGCAGCCGTTGTCGCCACCGGACCGTTCGTTGCTGTTGCATACA
GAGACTTGTACCTGAATGTTAGCATTTGTCCCTCCAACGCCAGGCAAACC
AAGGGCATGGCGACTAAGGCGCCATGGGTGAAATGACACGTGCTTAGATT
ATGTGCTGTGGTTGCTGTCCTCGCCGCGTTGACGTTCGAGAAACCCTTTG
GGACAAGTATCGTATCGTAAGGCGTGCCACAGGCATCAAACCTGCCCGGC
AGGAAAGACATTGAAATGTGCATTTTGTATTTTTGTACTCCTTTTTAGCA
CTTGCCCTCTGGGATGTAAACGTTTTCTAAATAAGAATGCGTTTACCCTT
GGTGACGCACTGACGCAGGTTGGTTTTGCAAGGTCTTTCTAGGTATTTGA
GCTTTGTGTACATTAAACTTCAGAATATTTAGTTCCGGTGAAAATTTTGG
ACACAACTTTTGCTACCATCCCACTTGCACGCAAGCACGTGAGTCAAAGT
GAATTCTAGGAAGTACGGAACTGCGCCGAGAATTAACATGTTGATAGTTT
TCTCTTTTCATGCATGAGTCGCGTGTGTTGCCATGATCAGTTTTAGCGTT
TCGTGTGTACACAGTAGTGTCTGGTAGATGGCAAGCTCGTACTAATGTAG
TAATCTAAACATACAACACGAGTGTTGTCCTGGTTGGCAGGAGTGCATCT
ATCTGCGGCACACGTCCGTGGCGGTGGAATGTAGAGGTGGGAGGGGGAGG
TGAGACAGAGACAGAGACTACTCGTGTATGTTTAGAAACATCAGGCGATC
CGATAGGTTTGTCGTGGGGTTCTCTCTCTTCGCGTTATTGTCCGGACGAC
TTTTTTTCTGCCGCCGGAAACGCCAAGATATATATTTGCGTAGCATCCCT
CATGTTCGACTCCGT
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:415048..418162+

>mRNA_E-siliculosus-1a_M_contig96.17596.1 ID=mRNA_E-siliculosus-1a_M_contig96.17596.1|Name=mRNA_E-siliculosus-1a_M_contig96.17596.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=978bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:415048..418162+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGCCTCCACCAAGCCCACGTACAATGCGATGGCCTCCACCAAGCCCAC
GTACAATGCGATGGTATTTGATGCCATCAAGACCCTCAAGGAGCGTAACG
GATCCTCCATCCAGGCGATCAAGAAGAGCATCACCGCCACCTACCCTACC
CTCAACTTCACGCCGCACCAGATGCGCAGCGCCCTCAAGAAGGGAGTTGA
GTCCGGCAAGTTCATCAAGATGGTATTTGATGCCATCAAGACCCTCAAGG
AGCGTAACGGATCCTCCATCCAGGCGATCAAGAAGAGCATCACCGCCACC
TACCCTACCCTCAACTTCACGCCGCACCAGATGCGCAGCGCCCTCAAGAA
GGGAGTTGAGTCCGGCAAGTTCATCAAGATGAAGGCCTCTTACAAGCTGA
GCGCCGAGGCGAAGAAGCCCGCCCCCAAGAAGAAGGTAGTGAAAAAGAAG
GTGGTGAAGAAGGTCGTCAAGAAGAAGGTGCCGAAGAAGAAGGTGGCCAA
GAAGCCCGCTGTGAAGAAGACCACGACGAAGAAGCCCGCCGCCAAGAAGG
CCACCACCACCAAGAAGACCGTCACCAAGAAGAAGCCCACCACCGCCAAG
AAGCCCGCGGCTAAGAAGACCACCACCAAGAAGAAGCCCTCCACCCCCAA
GAAGAAGGCTGCCCCCAAGAAGGCCTAAATGAAGGCCTCTTACAAGCTGA
GCGCCGAGGCGAAGAAGCCCGCCCCCAAGAAGAAGGTAGTGAAAAAGAAG
GTGGTGAAGAAGGTCGTCAAGAAGAAGGTGCCGAAGAAGAAGGTGGCCAA
GAAGCCCGCTGTGAAGAAGACCACGACGAAGAAGCCCGCCGCCAAGAAGG
CCACCACCACCAAGAAGACCGTCACCAAGAAGAAGCCCACCACCGCCAAG
AAGCCCGCGGCTAAGAAGACCACCACCAAGAAGAAGCCCTCCACCCCCAA
GAAGAAGGCTGCCCCCAAGAAGGCCTAA
back to top