mRNA_E-siliculosus-1a_M_contig96.17592.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig96.17592.1 vs. uniprot
Match: D8LQ84_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ84_ECTSI) HSP 1 Score: 1312 bits (3396), Expect = 0.000e+0 Identity = 732/809 (90.48%), Postives = 746/809 (92.21%), Query Frame = 3
Query: 63 MALRDMDDPYEDDAAVKAQAVQSVAKQIKSSSQVHLKGAAGTDEAATRTLDETISETSRRVLAWVECAAXXXXXXXPHGSDGRRVFPPVLLTSCCRYMEALATAYPARFSADCRSLARPVASCVLVMTTTAKVHDSAIGVAVPCREAKGEGEENDDGVPSRNGCTITIEERNALELWVEMLGICLLPFCGSGGGSRSSSRSGVAEAASDDDGISRDPSGEHGDDPFDSDNEEEEDGAHDDEVEGSRVSGGGKARSRWVAGWMRRAGVTLAEPLECPFDVQPGGRDEDLPARLATLISYHAQAAASASRPASVXXXXXXXXXXXXXXXXXXXXXXXXDVTPSESHAAVVEEAFSCLLFLSETVPESSAQAECVKAALVSLKECAQSARLHCLEHRVPAALSILEGVPSRLKLLLTRSKSQGAKVYSTARSFCREALAAAVACARKLIGLAGGPVVMDDPRWFLETFVVKMASPLLLGDAVGALRAASMAARGMGTAAEGGEERGPDGNTSSGMETSLREVVLPGAVGRLIKALGNIDRYSAAAAKEVLKATAWLARAAGAEEIRPHRNRLGMALVECAASVGRASGAGGGVERDEKVRLCLRAIRRLGATVGGGGTAGAA--PATGDVLAAASDREPAAAQPFTEAALEFTCGVVEREWVGKRGERGEQEGGDDQESIIMLVEAHVTLVALLRSPSMCVPGIGPDGEWPPAAKRLAKLAWAVAYRVRKAAGAVESSMALADDDVMLLCQGLEVLEALEQCSGEFFEGKRSKLRFFEGDLSPVLTTLRGCHDKNTMHPVVYDACSWIRSTR 2483
MALRDMDDPYEDDA VKAQAVQSVAKQIKSSSQVHLKGAAGTDEAATRTLDETISETSRRVLAWVECAA PH SDGRRVFPPVLLTSCCRYMEALATAYPARFSADCRSLARPVASCVLVMT TAK HDSAIGVAVPCRE KGEGEENDDG PSR+G TITIEERNALELWVEMLGICLLPFCGSGGGSR++SRSG+ EA S DD SRDPSGEHGDDPFDSD GSRVSG GKARSRWVAGWMRRAG+TLAEPLECPFDV+PGGRDED+P RLATLISYHAQAAASASRPASV XXXXXXXXXXXXXXXXXXXXXXX TPSESHA VVEEAFSCLL LSETVPESSAQAECVKAALVSLKECAQSARL CLEHRVPAALS+LEGVPSRLKLLLTRSKSQGAKVYSTARSFCREAL AAVACARKLIGL GG VVMDDPRWFLETFVVKMASPLLLGDAVGALRAAS+AARGMGTAAEGGEERGPDG+T SGMET+LREVVLPGAVGRLIKALGNIDRYSAAAAKEVLKATAWLARAAGAEEIRPHRNRLGMALVECAASVGRASGAGGGVERDEKVRLCLRAIRRLGA PA GDVLAAASDREPAAAQ FTEAALEFTCGVVEREWVGKRGERGEQEGGD QESII LVEAHVTLVALLRSPSMCVPGIGPDGEWPPAAKRLAKLAWAVAYRVRKAAGAVESSMALADDDVMLLCQGLEVLEALE+CSGEFFEGKRSK+RFFEGDLSPVLTTLRGCHDKNTMHPVVYDACSW+R TR
Sbjct: 1 MALRDMDDPYEDDATVKAQAVQSVAKQIKSSSQVHLKGAAGTDEAATRTLDETISETSRRVLAWVECAAAAAAA--PHSSDGRRVFPPVLLTSCCRYMEALATAYPARFSADCRSLARPVASCVLVMTRTAKAHDSAIGVAVPCRETKGEGEENDDGFPSRSGRTITIEERNALELWVEMLGICLLPFCGSGGGSRTTSRSGLGEATSGDDDNSRDPSGEHGDDPFDSDXXXXXXXXXXXXXXGSRVSGDGKARSRWVAGWMRRAGITLAEPLECPFDVRPGGRDEDMPVRLATLISYHAQAAASASRPASVSXXXXXXXXXXXXXXXXXXXXXXXXXTPSESHALVVEEAFSCLLCLSETVPESSAQAECVKAALVSLKECAQSARLRCLEHRVPAALSMLEGVPSRLKLLLTRSKSQGAKVYSTARSFCREALTAAVACARKLIGLVGGLVVMDDPRWFLETFVVKMASPLLLGDAVGALRAASLAARGMGTAAEGGEERGPDGSTPSGMETALREVVLPGAVGRLIKALGNIDRYSAAAAKEVLKATAWLARAAGAEEIRPHRNRLGMALVECAASVGRASGAGGGVERDEKVRLCLRAIRRLGAAXXXXXXXXXXXXPAAGDVLAAASDREPAAAQQFTEAALEFTCGVVEREWVGKRGERGEQEGGDGQESIITLVEAHVTLVALLRSPSMCVPGIGPDGEWPPAAKRLAKLAWAVAYRVRKAAGAVESSMALADDDVMLLCQGLEVLEALEECSGEFFEGKRSKMRFFEGDLSPVLTTLRGCHDKNTMHPVVYDACSWVRLTR 807 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig96.17592.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig96.17592.1 >prot_E-siliculosus-1a_M_contig96.17592.1 ID=prot_E-siliculosus-1a_M_contig96.17592.1|Name=mRNA_E-siliculosus-1a_M_contig96.17592.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=808bp MALRDMDDPYEDDAAVKAQAVQSVAKQIKSSSQVHLKGAAGTDEAATRTLback to top mRNA from alignment at E-siliculosus-1a_M_contig96:378634..391099+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig96.17592.1 ID=mRNA_E-siliculosus-1a_M_contig96.17592.1|Name=mRNA_E-siliculosus-1a_M_contig96.17592.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=12466bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:378634..391099+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:378634..391099+ >mRNA_E-siliculosus-1a_M_contig96.17592.1 ID=mRNA_E-siliculosus-1a_M_contig96.17592.1|Name=mRNA_E-siliculosus-1a_M_contig96.17592.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=4848bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:378634..391099+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |