mRNA_E-siliculosus-1a_M_contig96.17589.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig96.17589.1
Unique NamemRNA_E-siliculosus-1a_M_contig96.17589.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig96.17589.1 vs. uniprot
Match: A0A6H5L6F2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6F2_9PHAE)

HSP 1 Score: 461 bits (1186), Expect = 2.360e-149
Identity = 427/548 (77.92%), Postives = 431/548 (78.65%), Query Frame = 1 
Query:  100 MLQGTPGMGAPSPGPGINGMVVQQAAAAAYSAGQHPGLESVSAPRNTTSPIPPPIPKAGAPVHWPGIEGVQAGAPEGLQNAGNAGGHGAXXXXXXXXXXXXXXXXXXXXXXEGPATATHAVHGAAAVXXXXXXXXXXXXXXXXXVHLPASVQHPAYEAPRQVAPAVTAQPMAMVTPPVVHGVAPKAAPPPALAVSGHPGAGSXXXXXXXXXXXXXXNVSAAXPAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVSAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTSGEGGASGEGXXXXXXXXXXXXXXXXXEGSQENEAAAAPRLAGKRPRGSMAASANKRAKEMQLRDFMLAVDEYGSTVPGEATRFHLQRGGLTTSNSQIVTLMSLAADHLVANIVHESSIFRNVRLQQAREQGREAAELLGEEGQMLTNEDLSLSLLSRGIIVSDSGLLVKAAGPAAVAAADPAGTGKDDR 1743
            MLQGTPGMGAP PGPGINGMVVQQAAAAAYSAGQHPGLESVSAPRNTTSPIPPPIPK GAPVHWPG EG QAGAPEGLQN GNAGGH  XXXXXXXXXXXXXXXXXXXXX E PAT+THA HGAAAV     XXXXXXXXXXXXVHL                               VHGVAPKAAPPPAL VSGHPGAGSXXXXXXXXXXXXXXNVSAAX A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                              RTSGEGG SGEG   XXXXXXXXXXXXX EG QENEAAAAPRLAGKRPRGSMAASANKRAKEMQLRDF+LAVDEYGSTVPGEATRFHLQRGGLTTSNSQIVTLMSLAADHLVA+IVHESSIFRNVRLQQAREQGREAAELLGEEGQMLTNEDLSLSLLSRGI+VSDSGLLVKAAGPAAVAAADPAGTGKDDR
Sbjct:    1 MLQGTPGMGAPPPGPGINGMVVQQAAAAAYSAGQHPGLESVSAPRNTTSPIPPPIPKPGAPVHWPGKEGGQAGAPEGLQNTGNAGGHXXXXXXXXXXXXXXXXXXXXXXXGESPATSTHAAHGAAAVAPPVAXXXXXXXXXXXXVHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVHGVAPKAAPPPALTVSGHPGAGSXXXXXXXXXXXXXXNVSAAXXATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------------------------------------------------------RTSGEGGVSGEGGAAXXXXXXXXXXXXXSEGPQENEAAAAPRLAGKRPRGSMAASANKRAKEMQLRDFILAVDEYGSTVPGEATRFHLQRGGLTTSNSQIVTLMSLAADHLVASIVHESSIFRNVRLQQAREQGREAAELLGEEGQMLTNEDLSLSLLSRGIVVSDSGLLVKAAGPAAVAAADPAGTGKDDR 486
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig96.17589.1 vs. uniprot
Match: D8LQ87_ECTSI (Contains similarity to extensin (AtExt1) from Arabidopsis thaliana n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ87_ECTSI)

HSP 1 Score: 343 bits (881), Expect = 6.670e-105
Identity = 381/448 (85.04%), Postives = 386/448 (86.16%), Query Frame = 1 
Query:  454 HAVHGAAAVXXXXXXXXXXXXXXXXXVHLPASVQHPAYEAPRQVAPAVTAQPMAMVTPPVVHGVAPKAAPPPALAVSGHPGAGSXXXXXXXXXXXXXXNVSAAXPAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVSAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------RTSGEGGASGEGXXXXXXXXXXXXXXXXXEGSQENEAAAAPRLAGKRPRGSMAASANKRAKEMQLRDFMLAVDEYGSTVPGEATRFHLQRGGLTTSNSQIVTLMSLAADHLVANIVHESSIFRNVRLQQAREQGREAAELLGEEGQMLTNEDLSLSLLSRGIIVSDSGLLVKAAGPAAVAAADPAGTGKDDR 1743
            HAV+GAAAV          XXXXXXXVHLPASVQHPAY+A RQVAPAVTAQPMAMV PPVVHGVAPKAAPPPALAVS HPGAG XXXXXXXXXXXXXX     XPAM   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    XXXXXXXXXXXXXXXXXXXXXXXXXXXXX     XXXXXXXXX     XXXX      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                  RTSGEGGASGE XXXXXXXXXXXXXXXXXEG Q+NEAAAAPRLAGKRPRGSMAASANKRAKEMQLRDFMLAVDEYGSTVPGEATRFHLQRGGLTTSNSQIVTLMSLAADHLVA+IVHESSIFRNVRLQQAREQGREAAELLGEEGQMLTNEDLSLSLLSRGI+VSDSGLLVKAAGPAAVAAADPAGTGKDDR
Sbjct:    2 HAVYGAAAVAPPVAAVTAAXXXXXXXVHLPASVQHPAYDAARQVAPAVTAQPMAMVAPPVVHGVAPKAAPPPALAVSVHPGAGXXXXXXXXXXXXXXXXXXXXXPAMAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVSAVXXXXXXXXXXXXXXXXXXAQAVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVPATAAGRTSGEGGASGEXXXXXXXXXXXXXXXXXXEGPQKNEAAAAPRLAGKRPRGSMAASANKRAKEMQLRDFMLAVDEYGSTVPGEATRFHLQRGGLTTSNSQIVTLMSLAADHLVASIVHESSIFRNVRLQQAREQGREAAELLGEEGQMLTNEDLSLSLLSRGIVVSDSGLLVKAAGPAAVAAADPAGTGKDDR 449
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig96.17589.1 vs. uniprot
Match: A0A4D9D766_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D766_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.350e-5
Identity = 35/99 (35.35%), Postives = 58/99 (58.59%), Query Frame = 1 
Query: 1357 QLRDFMLAVDEYGSTVPGEATRFHLQRGGLTTSNSQIVTLMSLAADHLVANIVHESSIFRNVRLQQAREQGREAAELLGEEGQMLTNEDLSLSLLSRGI 1653
            +L  F+ A+D+Y  T+P E T + LQ+GG+T ++S+I  L+SLAA+ LV+ IVH+++ +  ++ Q               +G +L  EDL  SL   G+
Sbjct:   87 ELAPFLNALDQYHPTIPEEVTAYFLQQGGVTVTDSKIKKLVSLAAEKLVSEIVHDTTTYSRMKDQ---------------DGDILKMEDLRESLGKYGV 170
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig96.17589.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L6F2_9PHAE2.360e-14977.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQ87_ECTSI6.670e-10585.04Contains similarity to extensin (AtExt1) from Arab... [more]
A0A4D9D766_9STRA1.350e-535.35Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig96contigE-siliculosus-1a_M_contig96:359095..363581 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1725
Model size2959
Exons3
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig96.17589.1prot_E-siliculosus-1a_M_contig96.17589.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig96 360308..363560 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936534.839017-UTR-E-siliculosus-1a_M_contig96:359094..3603071622936534.839017-UTR-E-siliculosus-1a_M_contig96:359094..360307Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig96 359095..360307 -
1696251120.8933291-UTR-E-siliculosus-1a_M_contig96:359094..3603071696251120.8933291-UTR-E-siliculosus-1a_M_contig96:359094..360307Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig96 359095..360307 -
1622936534.9187539-UTR-E-siliculosus-1a_M_contig96:363560..3635811622936534.9187539-UTR-E-siliculosus-1a_M_contig96:363560..363581Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig96 363561..363581 -
1696251120.938966-UTR-E-siliculosus-1a_M_contig96:363560..3635811696251120.938966-UTR-E-siliculosus-1a_M_contig96:363560..363581Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig96 363561..363581 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936534.864034-CDS-E-siliculosus-1a_M_contig96:360307..3604191622936534.864034-CDS-E-siliculosus-1a_M_contig96:360307..360419Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 360308..360419 -
1696251120.9026194-CDS-E-siliculosus-1a_M_contig96:360307..3604191696251120.9026194-CDS-E-siliculosus-1a_M_contig96:360307..360419Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 360308..360419 -
1622936534.8858194-CDS-E-siliculosus-1a_M_contig96:361307..3614751622936534.8858194-CDS-E-siliculosus-1a_M_contig96:361307..361475Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 361308..361475 -
1696251120.9127426-CDS-E-siliculosus-1a_M_contig96:361307..3614751696251120.9127426-CDS-E-siliculosus-1a_M_contig96:361307..361475Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 361308..361475 -
1622936534.9029913-CDS-E-siliculosus-1a_M_contig96:362115..3635601622936534.9029913-CDS-E-siliculosus-1a_M_contig96:362115..363560Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 362116..363560 -
1696251120.924614-CDS-E-siliculosus-1a_M_contig96:362115..3635601696251120.924614-CDS-E-siliculosus-1a_M_contig96:362115..363560Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 362116..363560 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig96.17589.1

>prot_E-siliculosus-1a_M_contig96.17589.1 ID=prot_E-siliculosus-1a_M_contig96.17589.1|Name=mRNA_E-siliculosus-1a_M_contig96.17589.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=575bp
MEQQLTAGGLPTSAQQQQQQQRQQQAMLQGTPGMGAPSPGPGINGMVVQQ
AAAAAYSAGQHPGLESVSAPRNTTSPIPPPIPKAGAPVHWPGIEGVQAGA
PEGLQNAGNAGGHGAGGTGVVAAAAAAAAAAAAAGTGEGPATATHAVHGA
AAVAPPVAAVTAAPAPAPAPVHLPASVQHPAYEAPRQVAPAVTAQPMAMV
TPPVVHGVAPKAAPPPALAVSGHPGAGSAPPPSAMAVTGHPGNVSAAPPA
MAVAGHPGNVSAPPPAQAVAGHPGNVSAAPPAMAVAGHHVSAAPPAQAVA
GHPGTVSAAPPAMAVAGHHVSAAPPAQAVAGHPGNVSAPPPAQAVAGHPG
NVSAAPPAQAVAGHPGSGSAPPPAAVPATAPGRTSGEGGASGEGGAAEGE
GGDAGGGGGEVEGSQENEAAAAPRLAGKRPRGSMAASANKRAKEMQLRDF
MLAVDEYGSTVPGEATRFHLQRGGLTTSNSQIVTLMSLAADHLVANIVHE
SSIFRNVRLQQAREQGREAAELLGEEGQMLTNEDLSLSLLSRGIIVSDSG
LLVKAAGPAAVAAADPAGTGKDDR*
back to top

mRNA from alignment at E-siliculosus-1a_M_contig96:359095..363581-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig96.17589.1 ID=mRNA_E-siliculosus-1a_M_contig96.17589.1|Name=mRNA_E-siliculosus-1a_M_contig96.17589.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=4487bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:359095..363581- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CTGTCGCTTCGCGCTGGCGTAATGGAACAACAACTCACAGCTGGCGGGTT
GCCTACATCAGCTCAGCAACAGCAACAGCAACAGCGGCAACAGCAAGCTA
TGCTACAGGGGACGCCTGGCATGGGGGCGCCATCACCAGGACCTGGTATT
AATGGCATGGTGGTGCAGCAGGCGGCAGCGGCAGCGTATTCAGCTGGTCA
GCACCCAGGGCTTGAATCTGTTTCTGCACCGAGAAATACAACCTCCCCTA
TCCCTCCACCGATACCAAAAGCAGGCGCCCCTGTACATTGGCCTGGGATA
GAAGGAGTACAAGCAGGGGCACCAGAGGGTTTACAAAATGCCGGTAATGC
AGGGGGGCATGGTGCGGGAGGGACGGGTGTGGTGGCGGCGGCAGCGGCGG
CGGCGGCAGCTGCAGCGGCGGCGGGAACTGGCGAAGGTCCGGCAACCGCT
ACGCACGCGGTGCACGGTGCTGCTGCTGTGGCGCCGCCTGTAGCGGCGGT
GACGGCGGCGCCGGCGCCGGCGCCGGCGCCCGTTCACCTCCCTGCAAGCG
TTCAGCACCCCGCTTACGAGGCGCCTCGCCAGGTGGCACCAGCGGTGACC
GCTCAGCCTATGGCCATGGTCACCCCTCCTGTTGTGCACGGGGTAGCTCC
AAAGGCAGCACCGCCGCCGGCGCTGGCTGTATCTGGACACCCTGGAGCCG
GCTCTGCGCCGCCGCCGTCGGCGATGGCTGTGACTGGGCACCCTGGAAAT
GTCTCTGCCGCGCCGCCGGCGATGGCTGTGGCTGGACACCCTGGAAATGT
CTCTGCCCCACCGCCCGCGCAGGCTGTGGCTGGACACCCTGGAAACGTCT
CTGCCGCGCCGCCGGCGATGGCTGTCGCTGGGCACCACGTCTCTGCCGCG
CCGCCGGCGCAGGCTGTGGCTGGGCACCCTGGAACCGTCTCTGCCGCGCC
GCCGGCGATGGCTGTGGCTGGGCACCACGTCTCTGCCGCGCCGCCGGCGC
AAGCTGTGGCAGGGCACCCTGGAAACGTCTCTGCCCCGCCGCCGGCGCAG
GCTGTGGCTGGGCACCCTGGAAACGTGTCTGCTGCGCCGCCGGCGCAAGC
TGTGGCTGGGCACCCTGGAAGCGGGTCGGCGCCTCCACCGGCTGCGGTCC
CAGCGACAGCCCCAGGAAGAACAAGTGGAGAAGGAGGAGCAAGTGGAGAA
GGAGGAGCAGCGGAAGGAGAGGGAGGTGATGCAGGAGGGGGTGGGGGAGA
AGTGGAAGGGTCGCAAGAGAACGAGGCCGCAGCAGCGCCCCGCCTCGCCG
GGAAGAGACCGAGGGGGTCGATGGCCGCGTCTGCCAACAAACGAGCGAAG
GAGATGCAGCTGAGGGACTTCATGCTGGCCGTCGACGAGTACGGGTCTAC
CGTGCCAGGAGAGGCCACCAGGTTCCACCTGCAGAGGGGGGGGCTGACCA
CCTCCAACAGCCAGATGTGAGAGTCGATGGTACATGCGTGATTTTCTGAG
GGGAGGGGTGGGTACACCCGAGAAGAGCATCCGATGCCCTGTGGTACTCT
TCATGTCTTGGACTTGTACATGCGTGTCAATAGAGCTTCCCAACAAAATT
GGTCTTGTAAGCAACACGGTTGGAACTTGTTCCGACAAAACGTTCGCTGT
TTGGGAGTGAACATTCAAAAACGTCAGTCTAAAGGGATGTATGCGTCGGC
CCTAGAGCTGTAGTCTTTCTCCGTCCGCATTCACACTGCCGCGATCAGCA
CTTCAGTCCGACCGCGGGACGGTGTATCCGGAGTTATCGTGCGTAAGTTT
TTGTTCCTTGACGGCTCACGCTTTGGCGGATATGTGACTGAAAACAGCCA
CAACAAGAGAAATGTGGTACTTGAAGTATTTAAGTAATCAGCTTTCCGTC
GCGCTACATGATCGTCTCTACCTCTTGGGTTTGTCTCTCAGCTCTGCCGA
AACATTCAAGGCACCGCGCAAGAAATCAAGCAACCTGGCGAGTGCATACG
GCATCTGTACAGTAATAGTCGGGGCGCAACCTATTCTACCCCGCATTCAC
CACGTTACCCCCCGGCTCAGTACGCTCGTTCGCTCTGGCCGTGTGTTTGC
CTTCAGAGTAACGCTGATGTCCTTGGCGGCTGACCATCTGGTGGCGAACA
TCGTGCACGAGAGCTCCATCTTTCGGAATGTTCGCCTCCAGCAGGCAAGG
GAGCAGGGCAGAGAGGCGGCCGAGCTGCTGGGAGAGGAGGGCCAGATGCT
CACGAACGAAGACTTGTCGCTGAGGTACGGACTTGTGGTAGTTTGTCGGT
GGCGATGGCGGTGTTGCTGTTGCTTGCTGGAGTATTATGGTTCGTGGTGC
TGGCGGCGTTGTTGTGGTCACCACACCGCACCAGAAGTATGGTGTGTGAT
AGCACAGCCCTACGCACAAAGCTCGCTTCCCTGTACCTGTTGCGAAGCAC
CATCCTGTGGTACAGTAGTGCCATCCCGTTTATTTGTGGACGCCATTCGA
TACACCTTGCGGCATGTTTGGACGTACTGTACCAGCCGGAGCACAGCTGG
AGTTCACACGAAGAGACCACGCAGGACTTGTTTTCCCTTCGCCTTCCTTC
TGTGGCGCATGCCTTGATTTTCTAGCGAGAAAGATTCAGGCGCCGTCCCT
TGCCCCGGTCGACCGCGGAGCCGATTCTTTTTGCGTACTTGCACCGACGA
ATCGAATTTATCGAATTCAACTTTGACTGATGATGTGAGAAAAGTTAGCT
CATGTTACCGCGCCGAAATTCAAACTCAAGTCCAATCCGTCAGAAGGTCA
TGGCGCTACGAACTGAACCACCGGGGCGACCGCGATTGTTCGTCGTCCGT
GGCGTTTCCTTATTGTAATAATGTGGAGTCATTGACAACTTTAGATTGTT
GCGGAGTGTTCTTGGGGCTCTTTTTTGTCAGTGAGCAGCCGGGCGTACGA
AGGAGGCAACACCCTCGTCTGCTTGTTGTTACTGCCCTTCGCAGCTGGAA
TCGATTCTCCTCCTTTTTCCTGTTCTTGTACTTCGTGTCGTCTCTATTTA
CGGCCGAAAAGGATGCACAGATACTCGCCACGCGGGAGGTCTTACCCCTC
CGCCCCGATTTTGACCCACACTGCGTCCGACCTTTGCTGCGACCTGTGCT
TGTCGAATCCAGCTTGCTAAGCCGGGGTATCATTGTTTCGGATAGCGGGC
TGCTCGTCAAGGCCGCAGGGCCAGCCGCCGTCGCCGCTGCAGACCCCGCC
GGAACCGGGAAGGACGACCGGTGACACAATCGAACGGACGCTAGCTGCGG
TGGTGCGATGCTGGAGCCGGAAGACATCGCGAGAAGAGGATCACGCCGCC
GTCGATGTATGTCGAAGCCGTCAGAACAGGGCCTGAAGATCCACCTAGAG
CACGCCTCCCGTTTGGTGGTGGGAGGACTGGAGGATGTACGTTTTTTTTT
GCGCCGAGGGAGTCATTGCCAGTCTGGATCAGGGGTTTAAACCCTTACAG
AGGAGGGGAATTACCTTCAGGCTGCGGAAGCGCTGGCTCAAGGAGAAGGC
GGGGCTGGCTTATAGAATGACGGACCATTTTCGAAGCGATGCTGCCGCGT
TTGGGTGGGTGCTGGAGTGAATTGCGATAGCCGCGAAAGGAGAGAGCACC
GCGAGGTGCGGAAGCTCCTTGAGAGCTCGCTCCATTTCTTGATGGGAGTT
TTATCGGTGAGCGCTGCAGCCGTTACTCGGTGGCCGTCGGCGGTGTCCTT
CGCGCTCTCAACATTTGCGAAACGAGGGACCGCGTGAGGGAGGAGGAATA
GGAGGGCTGGGCTAGGACAGGCGGGGAAATGGGACAAGAGGGGGAGTCGT
CTCTGGCTCGGCCGCTCTCTCCCCGGTGTTGTTGGGCGCAATCTTGGTTG
TCGGTTTCGGCCTACGATCTCCGATTGGTTTGCCGTGTGGAATGCTTCGT
CGTACGATCTCCGATTGTTTTGCCTTGTGGCACGCTAACGGCGGCCTGTG
TGTCTGTTCACTGTGTTGCGCGCCAAACGCGAGAATTGTGACTTGTTTGT
TTTCGTTCCTGCGCACACGATGAGAGTTAGCAGTAATCACGACCTTGAGA
GTACACCTGGCTCATCTGTGTGTAGGATCGTCAATATGTTGTTCGATGCC
GTCCTTGCCGTATCGGAAAAATCCAGCCTCTCGTTTTTTGCCCGTGTCTG
CATTGAGATGTTGTCGGCAACCAACCACAGTTCGAAACTTTCAAGTCATT
ACCTGTACAGCGTCAGTTCGACTCTCGTTGCAGAGTGAAGTGGCCGATGC
ATTGTTTGGCGCAAGGTTTGGACTCCCTTGGTACCCCCCCAACCTTCGAG
CCCCACCCTGCTGCACGGTTTTGTTCGCGCGAGCGGGTCTCTGTTCGAGC
TCAGGGTAGCTCGACCCACGATGATGTTTTTGCCGCTTTTTATCGGGAGC
ACGTACGTTGTACGACTGGTGTGTACCACTGTATTGG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:359095..363581-

>mRNA_E-siliculosus-1a_M_contig96.17589.1 ID=mRNA_E-siliculosus-1a_M_contig96.17589.1|Name=mRNA_E-siliculosus-1a_M_contig96.17589.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=3450bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:359095..363581- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGAACAACAACTCACAGCTGGCGGGTTGCCTACATCAGCTCAGCAACA
GCAACAGCAACAGCGGCAACAGCAAGCTATGCTACAGGGGACGCCTGGCA
TGGGGGCGCCATCACCAGGACCTGGTATTAATGGCATGGTGGTGCAGCAG
GCGGCAGCGGCAGCGTATTCAGCTGGTCAGCACCCAGGGCTTGAATCTGT
TTCTGCACCGAGAAATACAACCTCCCCTATCCCTCCACCGATACCAAAAG
CAGGCGCCCCTGTACATTGGCCTGGGATAGAAGGAGTACAAGCAGGGGCA
CCAGAGGGTTTACAAAATGCCGGTAATGCAGGGGGGCATGGTGCGGGAGG
GACGGGTGTGGTGGCGGCGGCAGCGGCGGCGGCGGCAGCTGCAGCGGCGG
CGGGAACTGGCGAAGGTCCGGCAACCGCTACGCACGCGGTGCACGGTGCT
GCTGCTGTGGCGCCGCCTGTAGCGGCGGTGACGGCGGCGCCGGCGCCGGC
GCCGGCGCCCGTTCACCTCCCTGCAAGCGTTCAGCACCCCGCTTACGAGG
CGCCTCGCCAGGTGGCACCAGCGGTGACCGCTCAGCCTATGGCCATGGTC
ACCCCTCCTGTTGTGCACGGGGTAGCTCCAAAGGCAGCACCGCCGCCGGC
GCTGGCTGTATCTGGACACCCTGGAGCCGGCTCTGCGCCGCCGCCGTCGG
CGATGGCTGTGACTGGGCACCCTGGAAATGTCTCTGCCGCGCCGCCGGCG
ATGGCTGTGGCTGGACACCCTGGAAATGTCTCTGCCCCACCGCCCGCGCA
GGCTGTGGCTGGACACCCTGGAAACGTCTCTGCCGCGCCGCCGGCGATGG
CTGTCGCTGGGCACCACGTCTCTGCCGCGCCGCCGGCGCAGGCTGTGGCT
GGGCACCCTGGAACCGTCTCTGCCGCGCCGCCGGCGATGGCTGTGGCTGG
GCACCACGTCTCTGCCGCGCCGCCGGCGCAAGCTGTGGCAGGGCACCCTG
GAAACGTCTCTGCCCCGCCGCCGGCGCAGGCTGTGGCTGGGCACCCTGGA
AACGTGTCTGCTGCGCCGCCGGCGCAAGCTGTGGCTGGGCACCCTGGAAG
CGGGTCGGCGCCTCCACCGGCTGCGGTCCCAGCGACAGCCCCAGGAAGAA
CAAGTGGAGAAGGAGGAGCAAGTGGAGAAGGAGGAGCAGCGGAAGGAGAG
GGAGGTGATGCAGGAGGGGGTGGGGGAGAAGTGGAAGGGTCGCAAGAGAA
CGAGGCCGCAGCAGCGCCCCGCCTCGCCGGGAAGAGACCGAGGGGGTCGA
TGGCCGCGTCTGCCAACAAACGAGCGAAGGAGATGCAGCTGAGGGACTTC
ATGCTGGCCGTCGACGAGTACGGGTCTACCGTGCCAGGAGAGGCCACCAG
GTTCCACCTGCAGAGGGGGGGGCTGACCACCTCCAACAGCCAGATATGGA
ACAACAACTCACAGCTGGCGGGTTGCCTACATCAGCTCAGCAACAGCAAC
AGCAACAGCGGCAACAGCAAGCTATGCTACAGGGGACGCCTGGCATGGGG
GCGCCATCACCAGGACCTGGTATTAATGGCATGGTGGTGCAGCAGGCGGC
AGCGGCAGCGTATTCAGCTGGTCAGCACCCAGGGCTTGAATCTGTTTCTG
CACCGAGAAATACAACCTCCCCTATCCCTCCACCGATACCAAAAGCAGGC
GCCCCTGTACATTGGCCTGGGATAGAAGGAGTACAAGCAGGGGCACCAGA
GGGTTTACAAAATGCCGGTAATGCAGGGGGGCATGGTGCGGGAGGGACGG
GTGTGGTGGCGGCGGCAGCGGCGGCGGCGGCAGCTGCAGCGGCGGCGGGA
ACTGGCGAAGGTCCGGCAACCGCTACGCACGCGGTGCACGGTGCTGCTGC
TGTGGCGCCGCCTGTAGCGGCGGTGACGGCGGCGCCGGCGCCGGCGCCGG
CGCCCGTTCACCTCCCTGCAAGCGTTCAGCACCCCGCTTACGAGGCGCCT
CGCCAGGTGGCACCAGCGGTGACCGCTCAGCCTATGGCCATGGTCACCCC
TCCTGTTGTGCACGGGGTAGCTCCAAAGGCAGCACCGCCGCCGGCGCTGG
CTGTATCTGGACACCCTGGAGCCGGCTCTGCGCCGCCGCCGTCGGCGATG
GCTGTGACTGGGCACCCTGGAAATGTCTCTGCCGCGCCGCCGGCGATGGC
TGTGGCTGGACACCCTGGAAATGTCTCTGCCCCACCGCCCGCGCAGGCTG
TGGCTGGACACCCTGGAAACGTCTCTGCCGCGCCGCCGGCGATGGCTGTC
GCTGGGCACCACGTCTCTGCCGCGCCGCCGGCGCAGGCTGTGGCTGGGCA
CCCTGGAACCGTCTCTGCCGCGCCGCCGGCGATGGCTGTGGCTGGGCACC
ACGTCTCTGCCGCGCCGCCGGCGCAAGCTGTGGCAGGGCACCCTGGAAAC
GTCTCTGCCCCGCCGCCGGCGCAGGCTGTGGCTGGGCACCCTGGAAACGT
GTCTGCTGCGCCGCCGGCGCAAGCTGTGGCTGGGCACCCTGGAAGCGGGT
CGGCGCCTCCACCGGCTGCGGTCCCAGCGACAGCCCCAGGAAGAACAAGT
GGAGAAGGAGGAGCAAGTGGAGAAGGAGGAGCAGCGGAAGGAGAGGGAGG
TGATGCAGGAGGGGGTGGGGGAGAAGTGGAAGGGTCGCAAGAGAACGAGG
CCGCAGCAGCGCCCCGCCTCGCCGGGAAGAGACCGAGGGGGTCGATGGCC
GCGTCTGCCAACAAACGAGCGAAGGAGATGCAGCTGAGGGACTTCATGCT
GGCCGTCGACGAGTACGGGTCTACCGTGCCAGGAGAGGCCACCAGGTTCC
ACCTGCAGAGGGGGGGGCTGACCACCTCCAACAGCCAGATAGTAACGCTG
ATGTCCTTGGCGGCTGACCATCTGGTGGCGAACATCGTGCACGAGAGCTC
CATCTTTCGGAATGTTCGCCTCCAGCAGGCAAGGGAGCAGGGCAGAGAGG
CGGCCGAGCTGCTGGGAGAGGAGGGCCAGATGCTCACGAACGAAGACTTG
TCGCTGAGAGTAACGCTGATGTCCTTGGCGGCTGACCATCTGGTGGCGAA
CATCGTGCACGAGAGCTCCATCTTTCGGAATGTTCGCCTCCAGCAGGCAA
GGGAGCAGGGCAGAGAGGCGGCCGAGCTGCTGGGAGAGGAGGGCCAGATG
CTCACGAACGAAGACTTGTCGCTGAGCTTGCTAAGCCGGGGTATCATTGT
TTCGGATAGCGGGCTGCTCGTCAAGGCCGCAGGGCCAGCCGCCGTCGCCG
CTGCAGACCCCGCCGGAACCGGGAAGGACGACCGGTGACTTGCTAAGCCG
GGGTATCATTGTTTCGGATAGCGGGCTGCTCGTCAAGGCCGCAGGGCCAG
CCGCCGTCGCCGCTGCAGACCCCGCCGGAACCGGGAAGGACGACCGGTGA
back to top