mRNA_E-siliculosus-1a_M_contig96.17575.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig96.17575.1
Unique NamemRNA_E-siliculosus-1a_M_contig96.17575.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig96.17575.1 vs. uniprot
Match: A0A6H5KKT3_9PHAE (U1-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKT3_9PHAE)

HSP 1 Score: 386 bits (991), Expect = 1.100e-130
Identity = 228/232 (98.28%), Postives = 230/232 (99.14%), Query Frame = 2
Query:   50 MSKDLGYRQVKNVESRRTWDRDYYEAKAKERIEQGDDYQEKDEGGPARRSQKEEFQPAAAGAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKMHKQREEDRISGALKKPSAEDEFDTRVREAEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQDPDMAAMMGFGGFGGGSKK 745
            MSKDLGY+QVKNVESRRTWDRDYYEAKAKERIEQGDDYQEKDEG PARRSQKEEFQPAA GAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKMHKQREEDRISGALKKPSAEDEFDTRVREAEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQDP+MAAMMGFGGFGGGSKK
Sbjct:    1 MSKDLGYKQVKNVESRRTWDRDYYEAKAKERIEQGDDYQEKDEGAPARRSQKEEFQPAAPGAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKMHKQREEDRISGALKKPSAEDEFDTRVREAEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQDPEMAAMMGFGGFGGGSKK 232          
BLAST of mRNA_E-siliculosus-1a_M_contig96.17575.1 vs. uniprot
Match: A0A835ZCC8_9STRA (U1-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCC8_9STRA)

HSP 1 Score: 182 bits (463), Expect = 2.710e-51
Identity = 141/232 (60.78%), Postives = 166/232 (71.55%), Query Frame = 2
Query:   53 SKDLGYRQVKNVESRRTWDRDYYEAKAKERIEQGDDYQEKDEGGPARRSQKEEFQPAAAGAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKMHKQREED--RISGALKKPSAEDEFDTRVREAEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQDPDMAAMMGFGGFGGGSK 742
            S DLG +QV NV  RR+WD + YE KAKER+E+GD+ +E           KEEFQPA  GA GPAGS RAYLK R  KVDL S+L KTQV+T+A+  S QGG++CE+CKC LKDSI YLDHINGKKHQR LG+SMRVERS+V  VK++L   + R ED  + SGA +K SA  E++ R+ E     XXXXXXXXXXXXXXXXXXXXXXXX        AAMMGFGGF GG +
Sbjct:    7 SDDLGDKQVSNV-VRRSWDVELYEKKAKERLERGDEVEEARPASSKAALNKEEFQPAPDGAQGPAGSRRAYLKARTEKVDLESRLHKTQVITSAAASSSQGGYWCEVCKCLLKDSIAYLDHINGKKHQRALGFSMRVERSSVGSVKEKLDKLRARAEDAAKASGAPRK-SAVQEYEERLAEYAAX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAMMGFGGFSGGKR 235          
BLAST of mRNA_E-siliculosus-1a_M_contig96.17575.1 vs. uniprot
Match: A0A7S2WR40_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WR40_9STRA)

HSP 1 Score: 168 bits (425), Expect = 8.270e-46
Identity = 124/218 (56.88%), Postives = 157/218 (72.02%), Query Frame = 2
Query:   95 RRTWDRDYYEAKAKERI--EQGDDYQEKDEGGPARRSQKEEFQPAAAGAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKMHKQREEDRISGALKKPSAEDEFDTRVREAEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQDPDMAAMMGFGGFGGGSK 742
            RRTWD   YE KA+ER+  E+G   +   +  P R   ++EF+ A   AAGPAGSARA+L  R R + L    GKTQ++       + GGWYC++C+C LKDS NYLDHINGKKHQR+LG+SMRVERSTV QV +R K+ K+R+ED +S A + P+A + ++ R+  A++ EXXXXXXXXXXXXXXXXXXXXXX  ME  DPD+ A MGFGGFGGG+K
Sbjct:   13 RRTWDVKEYEKKAQERLAREEGGIVEGDVDDRPVR--DRDEFRRAEDQAAGPAGSARAFLNNRNRALGLEKAAGKTQIIADNGLRQKGGGWYCDVCECLLKDSSNYLDHINGKKHQRKLGFSMRVERSTVGQVSERFKLAKKRKEDEMSVATR-PTAIEAYEQRIAAAQEEEXXXXXXXXXXXXXXXXXXXXXX--MEGMDPDLMAAMGFGGFGGGAK 225          
BLAST of mRNA_E-siliculosus-1a_M_contig96.17575.1 vs. uniprot
Match: W7U2Z2_9STRA (Zinc finger matrin-type protein 2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U2Z2_9STRA)

HSP 1 Score: 157 bits (396), Expect = 1.710e-41
Identity = 104/225 (46.22%), Postives = 134/225 (59.56%), Query Frame = 2
Query:   83 NVESRRTWDRDYYEAKAKERIEQ---GDDYQEKDEGGPARRSQKEEFQPAAAGAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKMHKQREEDRISGALKKPSAEDEFDTRVREAEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQ-------DPDMAAMMGFGGF 727
            NVE RRTWD +++E  AKER+E+   GD  ++K    P    ++EEFQ A AGAAGP GS RAYLK RE  + L  K+GK QVVT +S P QQGG++C+IC+C LKDS+ YLDHINGKKHQ+ LGYSMRVER  V +VK+RL   K+RE+++     +    E   D   ++ E +E                         E         DP+MAA+MGFGGF
Sbjct:   17 NVE-RRTWDLEHFEKIAKERLEKEASGDVEKKK----PGFVRKREEFQAAEAGAAGPEGSKRAYLKHREADLGLEEKVGKIQVVTGSSAPHQQGGYWCDICQCLLKDSMAYLDHINGKKHQKALGYSMRVERVGVDRVKERLNALKRREDEKKKAGPR----ESAIDAYQKKLEKDEAIKAQWKEARKEARINVIQRATKEEESTVEEEGGVDPEMAALMGFGGF 232          
BLAST of mRNA_E-siliculosus-1a_M_contig96.17575.1 vs. uniprot
Match: W2PLF3_PHYPN (U1-type domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=W2PLF3_PHYPN)

HSP 1 Score: 152 bits (385), Expect = 8.740e-40
Identity = 123/236 (52.12%), Postives = 154/236 (65.25%), Query Frame = 2
Query:   77 VKNVESRRTWDRDYYEAKAKERIEQGDDYQEKDEGGPARRSQKEEFQPAAAGAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKMHKQREEDRISGALKKPSAEDEFDTRVREAEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQ--------------DPDMAAMMGFGGFGGGSK 742
            V NV +R+TWDR +YE  A+ R E      EK+E     +S KEEFQ A  GAAGPAGSARA+LK R  K+ L S +G  +VV +    S+ GG+YCE+C+CGLKDS+ YLDHINGKKH R+LGYSMRVERSTV QVK+RL+   +R+ D +    KK  A ++++ +++ AE+  XXXXXXXXXXXXXXXXXXX                       D +M AMMGFGGFGG  K
Sbjct:   13 VANV-TRQTWDRAHYEKLAQLRAE---GKLEKEETKKVIKSTKEEFQAANEGAAGPAGSARAFLKARTNKMSLESSVGTVKVVKSDDV-SKNGGYYCEVCECGLKDSVAYLDHINGKKHLRKLGYSMRVERSTVDQVKNRLQSASKRKWDPLMA--KKLDAMEDYEKKLKAAEEEXXXXXXXXXXXXXXXXXXXXALEQDKSDDADKKPEAADEALDADAEMMAMMGFGGFGGSKK 241          
BLAST of mRNA_E-siliculosus-1a_M_contig96.17575.1 vs. uniprot
Match: A0A8J5JCN4_9STRA (zf-C2H2_jaz domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5JCN4_9STRA)

HSP 1 Score: 151 bits (382), Expect = 1.480e-39
Identity = 112/226 (49.56%), Postives = 138/226 (61.06%), Query Frame = 2
Query:   77 VKNVESRRTWDRDYYEAKAKERIEQGDDYQEKDEGGPARRSQKEEFQPAAAGAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKMHKQREEDRISGALKKPSAEDEFDTRVREAEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQDPD----MAAMMGFGGFGGGSK 742
            V NV +R+TWDR +YE  A+ R E      EK+E   A +S KEEFQ A  GAAGPAGSARA+LK R  K+ L + +G  +VV +    S+ GG+YCE+C+CGLKDS+ YLDHINGKKH R+LGYSMRVERSTV QVK+RL+ ++           KK  A +E + RV+      XXXXXXXX                   + PD    M AMMGFGGFGG  K
Sbjct:   16 VANV-ARQTWDRAHYEKLAQLRAE---GQLEKEETKKAIKSSKEEFQSANEGAAGPAGSARAFLKARTAKMSLETSVGTVKVVKSEDL-SKNGGYYCEVCECGLKDSVAYLDHINGKKHLRKLGYSMRVERSTVDQVKNRLQNYE-----------KKLKAAEEEEARVKXXXXXXXXXXXXXXDTLDQDKNDDADKKPEAADEVPDADAEMMAMMGFGGFGGSKK 225          
BLAST of mRNA_E-siliculosus-1a_M_contig96.17575.1 vs. uniprot
Match: A0A3R7GK79_9STRA (U1-type domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GK79_9STRA)

HSP 1 Score: 150 bits (379), Expect = 6.850e-39
Identity = 111/238 (46.64%), Postives = 143/238 (60.08%), Query Frame = 2
Query:   77 VKNVESRRTWDRDYYEAKAKERIEQGDDYQEKDEGGPARRSQKEEFQPAAAGAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKMHKQREEDRISGALKKPSAEDEFDTRVREAEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQ----------------DPDMAAMMGFGGFGGGSK 742
            V NV +R+TWDR++YE  AK R E      E++E     +S KEEFQ A   AAGPAGSARA+LK R  K+ L + +G  +VV +    S+ GG+YCE+C+CGLKDS+ YLDHINGKKH R+LGYSMRVERSTV QVK RL+   +R+ D +    KK     +++ +V+EAE+ E       XXXXXXXX            +                D +M +MMGFGGFGG  K
Sbjct:   13 VANV-ARQTWDREHYEKLAKLRAE---GQLEQEETKKVIKSSKEEFQAADDRAAGPAGSARAFLKARTSKMSLENSVGTVKVVKSDDL-SKNGGYYCEVCECGLKDSVAYLDHINGKKHLRKLGYSMRVERSTVDQVKSRLQSASKRKWDPLM--TKKLDTMADYEKKVKEAEEEEARIKRQKXXXXXXXXLGDQQTSEVKSEKATDKKPEAEDEAVPDADTEMMSMMGFGGFGGSKK 243          
BLAST of mRNA_E-siliculosus-1a_M_contig96.17575.1 vs. uniprot
Match: A0A0P1ATE8_PLAHL (Zinc finger matrin-type protein 2 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ATE8_PLAHL)

HSP 1 Score: 149 bits (377), Expect = 4.610e-38
Identity = 103/232 (44.40%), Postives = 132/232 (56.90%), Query Frame = 2
Query:   77 VKNVESRRTWDRDYYEAKAKERIEQGDDYQEKDEGGPARRSQKEEFQPAAAGAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKMHKQREEDRISGALKKPSAEDEFDTRVREAEDNEXXXXXXXXXXXXXXXXXXXXXXXX----------MEFQDPDMAAMMGFGGFGGGSK 742
            V NV  R+TWDR +YE  A+ R E G    EK+       S KEEFQ A   AAGPAGSARA+LK R  K+ L + +G  +VV +    S+  G+YCE+C+C LKDS+ YLDHINGKKH R+LGYSMRVERSTV QVKDRL+   +R+ D +    KK  A +E++ +++ AE+ E                                  +   D +M AMMGFGGFGG  K
Sbjct:   66 VSNV-VRQTWDRAHYEKLAQLRAEGG---VEKETTKKVIHSSKEEFQTADESAAGPAGSARAFLKARTAKMSLETSVGTVKVVKSDEL-SKNSGYYCEVCECSLKDSVAYLDHINGKKHLRKLGYSMRVERSTVDQVKDRLQSAAKRKWDPLM--TKKLDAMEEYEKKLKAAEEAEICLKRQKKEQRKAKKCESEDLSQDRVTAEETVDVVSESDAEMMAMMGFGGFGGSKK 290          
BLAST of mRNA_E-siliculosus-1a_M_contig96.17575.1 vs. uniprot
Match: A0A1Z5KJY6_FISSO (U4/U6.U5 tri-snRNP component SNU23 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KJY6_FISSO)

HSP 1 Score: 148 bits (373), Expect = 9.880e-38
Identity = 126/263 (47.91%), Postives = 160/263 (60.84%), Query Frame = 2
Query:   41 TATMSKDLGYRQVKNVESRRTWDRDYYEAKAKERI---EQGDDYQEKDEGGPARR---------SQKEEFQPAAAGAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQG-GWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKM-------HKQREEDRISGALKKPSAEDEFDTRVREAED---------NEXXXXXXXXXXXXXXXXXXXXXXXXMEFQDPDMAAMMGFGGFGGGSK 742
            T TM+ +L Y+QV NV SRR WD + YE +AKER    E+    +E  + G             S KEEFQ A   AAGP GS RA+L+ R++ +DL SK+G +++V+A +   + G GW+C++C C LKDS+ YLDHINGKKHQR+LG++MRVERST  QV DRLK         K+   D I    +   ++DE   R RE +              XXXXXXXXXXXXXXXXXX     E  DP+MAAMMGF GFGGG+K
Sbjct:    6 TITMASNLNYKQVANV-SRRKWDVESYEQRAKERQAREEEAGYLEETRKKGTDNSTANAKNEDDSNKEEFQAAPPDAAGPEGSKRAFLRARQQAIDLESKVGTSEMVSADNAVVKSGIGWHCKVCDCFLKDSLTYLDHINGKKHQRKLGFTMRVERSTKDQVLDRLKSISQTSKSQKETSLDDIVDLNELVQSKDEALQREREEKXXXXXXXXAMENMRXXXXXXXXXXXXXXXXXXEEVDFEGIDPEMAAMMGFSGFGGGNK 267          
BLAST of mRNA_E-siliculosus-1a_M_contig96.17575.1 vs. uniprot
Match: UPI000A2A692D (zinc finger matrin-type protein 2 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A692D)

HSP 1 Score: 144 bits (363), Expect = 4.490e-37
Identity = 100/221 (45.25%), Postives = 129/221 (58.37%), Query Frame = 2
Query:   80 KNVESRRTWDRDYYEAKAKERIEQGDDYQEKDEGGPARRSQKEEFQPAAAGAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKMHKQREEDRISGALKKPSAEDEFDTRVREAEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQDPDMAAMMGFGGFGGGSK 742
            KN   RRTWD+D YE KAKER+++ +D          R +  +                R  LK RE +VDL S LGK+ V+T +ST SQ GG+YC +C C +KDSIN+LDHINGKKHQR LG SMRVERST+ QVK R +++K++ E+      +K +A+ + D RV   ++ EXXXXXXX                 +   DPDMAAMMGF GFG   K
Sbjct:    8 KNDNFRRTWDKDEYEKKAKERLQELEDXXXXXXXXXRREAPIK----------------RKLLKKREYEVDLESNLGKSVVITKSSTMSQSGGYYCNVCDCIVKDSINFLDHINGKKHQRNLGMSMRVERSTLDQVKKRFELNKRKREE------EKQTADYDLDERVAILKEEEXXXXXXXKDYKREKKLKTQDQDSGV---DPDMAAMMGFSGFGSSKK 203          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig96.17575.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKT3_9PHAE1.100e-13098.28U1-type domain-containing protein n=2 Tax=Ectocarp... [more]
A0A835ZCC8_9STRA2.710e-5160.78U1-type domain-containing protein n=1 Tax=Tribonem... [more]
A0A7S2WR40_9STRA8.270e-4656.88Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
W7U2Z2_9STRA1.710e-4146.22Zinc finger matrin-type protein 2 n=1 Tax=Nannochl... [more]
W2PLF3_PHYPN8.740e-4052.12U1-type domain-containing protein n=11 Tax=Phytoph... [more]
A0A8J5JCN4_9STRA1.480e-3949.56zf-C2H2_jaz domain-containing protein n=1 Tax=Phyt... [more]
A0A3R7GK79_9STRA6.850e-3946.64U1-type domain-containing protein n=3 Tax=Phytopht... [more]
A0A0P1ATE8_PLAHL4.610e-3844.40Zinc finger matrin-type protein 2 n=1 Tax=Plasmopa... [more]
A0A1Z5KJY6_FISSO9.880e-3847.91U4/U6.U5 tri-snRNP component SNU23 n=2 Tax=Fistuli... [more]
UPI000A2A692D4.490e-3745.25zinc finger matrin-type protein 2 n=1 Tax=Exaiptas... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig96contigE-siliculosus-1a_M_contig96:205222..208896 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size699
Model size1388
Exons4
Ec32 orthologEc-26_005600.1
Ec32 ortholog descriptionConserved C2H2 zinc finger protein
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko03041
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.A
EggNOG OGsKOG4727@1,KOG4727@2759
EggNOG free text desc.mRNA splicing, via spliceosome
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0030532,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0046540,GO:0071704,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1901363,GO:1990904
KEGG Pathwayko03040,map03040
KEGG koko:K12848
Preferred nameSNU23
Seed eggNOG ortholog2880.D8LQ99
Seed ortholog evalue1.4e-106
Seed ortholog score392.5
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig96.17575.1prot_E-siliculosus-1a_M_contig96.17575.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig96 205271..208256 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936530.909614-UTR-E-siliculosus-1a_M_contig96:205221..2052701622936530.909614-UTR-E-siliculosus-1a_M_contig96:205221..205270Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig96 205222..205270 +
1696251119.0865762-UTR-E-siliculosus-1a_M_contig96:205221..2052701696251119.0865762-UTR-E-siliculosus-1a_M_contig96:205221..205270Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig96 205222..205270 +
1622936530.9836872-UTR-E-siliculosus-1a_M_contig96:208256..2088961622936530.9836872-UTR-E-siliculosus-1a_M_contig96:208256..208896Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig96 208257..208896 +
1696251119.1490197-UTR-E-siliculosus-1a_M_contig96:208256..2088961696251119.1490197-UTR-E-siliculosus-1a_M_contig96:208256..208896Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig96 208257..208896 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936530.92193-CDS-E-siliculosus-1a_M_contig96:205270..2054921622936530.92193-CDS-E-siliculosus-1a_M_contig96:205270..205492Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 205271..205492 +
1696251119.1034055-CDS-E-siliculosus-1a_M_contig96:205270..2054921696251119.1034055-CDS-E-siliculosus-1a_M_contig96:205270..205492Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 205271..205492 +
1622936530.9395127-CDS-E-siliculosus-1a_M_contig96:206174..2063871622936530.9395127-CDS-E-siliculosus-1a_M_contig96:206174..206387Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 206175..206387 +
1696251119.1152883-CDS-E-siliculosus-1a_M_contig96:206174..2063871696251119.1152883-CDS-E-siliculosus-1a_M_contig96:206174..206387Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 206175..206387 +
1622936530.954634-CDS-E-siliculosus-1a_M_contig96:207302..2074131622936530.954634-CDS-E-siliculosus-1a_M_contig96:207302..207413Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 207303..207413 +
1696251119.1267102-CDS-E-siliculosus-1a_M_contig96:207302..2074131696251119.1267102-CDS-E-siliculosus-1a_M_contig96:207302..207413Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 207303..207413 +
1622936530.96926-CDS-E-siliculosus-1a_M_contig96:208103..2082561622936530.96926-CDS-E-siliculosus-1a_M_contig96:208103..208256Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 208104..208256 +
1696251119.138292-CDS-E-siliculosus-1a_M_contig96:208103..2082561696251119.138292-CDS-E-siliculosus-1a_M_contig96:208103..208256Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 208104..208256 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig96.17575.1

>prot_E-siliculosus-1a_M_contig96.17575.1 ID=prot_E-siliculosus-1a_M_contig96.17575.1|Name=mRNA_E-siliculosus-1a_M_contig96.17575.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=233bp
MSKDLGYRQVKNVESRRTWDRDYYEAKAKERIEQGDDYQEKDEGGPARRS
QKEEFQPAAAGAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQ
QGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRL
KMHKQREEDRISGALKKPSAEDEFDTRVREAEDNEERRKRQKREAKRLAK
KKQQEEEEEMEFQDPDMAAMMGFGGFGGGSKK*
back to top

mRNA from alignment at E-siliculosus-1a_M_contig96:205222..208896+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig96.17575.1 ID=mRNA_E-siliculosus-1a_M_contig96.17575.1|Name=mRNA_E-siliculosus-1a_M_contig96.17575.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3675bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:205222..208896+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GATAAGCATCATCAGACGAGAGCGCAAGGGTGACCGACCGACAGCAACCA TGTCGAAAGACCTCGGCTACAGGCAAGTGAAGAACGTCGAGTCGAGGCGG ACATGGGATCGCGACTACTACGAGGCTAAGGCAAAGGAGAGGATAGAGCA GGGCGACGACTACCAGGAAAAGGACGAAGGGGGACCTGCAAGGAGAAGTC AAAAGGAGGAATTCCAGCCGGCTGCCGCGGGGGCGGCGGGACCAGCAGGC TCAGCGCGGGCTTACCTCAAGGTTCGACTGCTGCACAACTCCAGCGCTTC GCGAGTACCAATGCAGCTTTCTTTGCGTTCACCGTTGCCTGGTAGGCAGT TCCTAGGTCGTGCCAAGAGTTCCAACCTCAGCGTTATTGGTGGGCGGTGT GAAAAAGGTGAATGGTAATTCGAGACTCCGCTTCGGAAACACTACAGTAC CAGCAGTATACCGGCGGCAAGCGTGATGCGGTGAAACTGATCGTCTACAT ACACAGCTTCAGCGATCTCTAGGCCAACACGGTAACACGGTCTTGATGTT CGGTCTTTCAGTCTTCGCTGCTCCACCAAAATCTTCCTGGAGTAGCGTGC TGGTTGGGAAGGGGCTGACAAGCAGATAATCCTACTTTTTCTTTAGTTGG GCTGCCGACCCTGTTTGCGGAGGAAAGGTACTCAGGAAAACAAGGGGTCC CCTTAACCTTACCTCAACTTGTACGTGTCACTCTGCGGTCTGGCACATTG CCCCGCACTGGGCAACGAAGACGTGTTTTCAAAGCCCGTATGCATAAGCG CAAGCACGTTTTCCTCGTCGAAGGACCCCGACGACTGCTGCTGTTGAAAC ATCGCGCTGCAAATACGATTTATTTGCGTTGAGGCAAAGACGCCCCGGGT AAAAAGAGCCTCAACCTTCCGCGTCCTTCCTGCCGATCGACCGCATGCCA CAGACCCGAGAGAGGAAGGTCGACCTCTCCTCCAAGCTCGGCAAGACGCA GGTAGTCACCGCGGCATCCACGCCGTCCCAGCAGGGAGGCTGGTACTGCG AGATCTGCAAGTGCGGGCTCAAGGACAGCATCAACTACCTGGACCACATC AACGGCAAGAAGCACCAGAGGGAGCTGGGCTACAGCATGCGGGTAGAGAG GTCCACCGTCTCGCAGGTGGGTGGGGCGGGAACAGTTTGCTTGGCGAATG CGTGGTAGCATCTGGTCACACGTTGCCCACAAAATTTCGTCGGGGAACTC GCCCCCCGGAAAAAGCGGGCCTGGTCTCAATTCCTCGACAGCAGGTACTG TAGATGTGAGAATCTGGATAGCACGCCAAGACCCATAGCCGCGAAGAAAC GCTGATTGACGGTGTGATTTGATCATGTCCCAGCCACTTTTTTCAAGACT GCTGTGTTGGGCGTCAGGGTGTACTTGGCTCACGTGCGACCGGTCCTCAT GATCAACAGGTTTCCCGTTGTCGTGGTCAAGTTGTCGTAGATACTGTAGC GGAGACGTTGTCGTAGATACTGTAGCGGAGACCGACGTGGTGTTGGATGT GTGCTCCTGTCCCCAAGTACTCCAAACTCTCATGTGTATTTCTTGCTGTG ACGATGGTTCACCACCTCCGTACAAGGCGCAAGTGTTTTGTTGGGTCTAC GGTTGCTGTTATTTAGTCAACCTGTTTTATTTTGGAACTGGGACGGGGAT ACGACCGTCTAATGACTTGGAGATGCAGTTCTTTCTCTTTGAATTGGCTC GTGGCAGGAAGAGTATAGAAACAACCCAAGAACGGCATTGGTCGGTTTTT CCGAACTCAAAACTGCACTCCAAGGTGTCTTTTATTCGTCGCAACATAAT CGTGTACAGAACCAACAGTGACACTACTGATCCGCAAGCCCGACTGAACG CTCTGAATCGTATCTCCGCATCTCGTGTTGTCCTCCACGCTTGAAACGAG CAAGACATACATACCGCCTACATCGATGAAACAATGCCTATACACACAAG GACATGCTCCTTTTGCTCTTGTTCGTTCAACGGCGTCACTCGTACGGCTC ACGGAACCAACCCCTTTTTTTTACACGGCAGGTCAAGGACCGACTGAAGA TGCACAAACAGCGGGAAGAGGATCGGATTTCGGGGGCTTTGAAGAAGCCA TCCGCGGAAGACGAGTTTGACACTAGGGTGCGGGAGGCAGAGGTAAGCGG GACCAGGCTACTTCCCCCACCGTCGTGGGTGGTTGAGGCATCGGCGCCTT GACCCTTTTGGTGTCGATGCCTTGCTTTCGTGGGCGCCCAAAGAGTCGCT TGCGGAATGCACGACCCGCTTTTTCTCCATCTCACGATAGCTCTTGGGAA GAGGTAGGTCGGACGCAATTGCGCAGATTGAAGAGTTGTTTTCTGGTGCT CGTACTGCCTCTGTCGGTAGCTCAAAGTACGTGGCACGTACCGCCCGTGG TATGAGTGTGCGCACGAAGAGGTGGCAATTTTCGAGCATATAAGATGGCA CCCCTTGTGAACGCGTGAAGTCGTACGCAGCACCACAGCAGTGTACCTAA AGATCAACGAGGTGCTGCCCTCGCCGCCAAACGCTTGCGACGTTCATTGA GTTGGTGCACACGAAAGCAGGGAGTACGCGAACGAAGGTAGCCGCCATTC AAATGCTGTACACTCGAAGCGTCACCCTCGTGACGGGCGGGCCACATGCC TTGCAGCTCTTGACCTGAAAACGAAAGAGAACCATCGCCGGAATACTCTG CACCATACACACAAATGGGCATGCTTCATGAGCTACAGAAACGTTGCAAT TCTGCTGGGCAGCTGCTGCAGAGTCTCCCTTCCGCTCTCTCCTCACCCAT GCCCCCCCCCCATACCTCTCCTGATCCTTAAGGACAACGAAGAGCGACGA AAGCGACAAAAGAGGGAGGCGAAACGGCTGGCGAAAAAGAAGCAACAGGA GGAGGAGGAGGAGATGGAGTTCCAGGACCCCGACATGGCGGCGATGATGG GCTTTGGAGGCTTCGGGGGGGGGAGCAAGAAGTAGTAGACACATCGATGT GGTACATCTCTCTGCGGTAATTGGAGCCGCGAGGGCACGAAATATCGTGT CCGCGACAAAGTAATCAATCTCATGGCAGCGTACTAGTGTTGTGTTTTCT TACGACCAAATGCCATGGATGGCATCATGATAGTGCGTGTAGTAGATGTG TTTTTTCGAATGGTGCTCAGAAAGATAGATATCACATCATGCCTTGATAC TTGGTTGTTGGCACTGTAGTTCACCTGGTTTTAAGTTTGTTGTTTAGAAG GGCAGACGAGGACGGTGCGCCGCGCGCGCCGCCGTATAGTCCACGCAACG ATTGCTCTTTTGCTTTGTTTGGTGGACTGTCGAGATCATGTACACTCACC TCCGTGAAGGCAAGATTGGAAGAAGTGCTAAACACTCACCTCCGTGAAGG CAAGATTGGAAGAAGTGCTAATCCTTGGAGCGGATGTTCCTGCCAATTAG TTGCCCTTTTGTCGGCTGGCAAGATAGGCTATGGGTTCGAACCCTTACAA AATTGGTGACGAGCGCCGGAAGAGATGTCTGTGAGATGCGTCGATGGCGG CGCAGCGTAGCTTGCGTTTTATCCGATCCCCGTTTTGTCCGTCAGTGTGT GCCACGAAGAAACAAATTACGTGGG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:205222..208896+

>mRNA_E-siliculosus-1a_M_contig96.17575.1 ID=mRNA_E-siliculosus-1a_M_contig96.17575.1|Name=mRNA_E-siliculosus-1a_M_contig96.17575.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1398bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:205222..208896+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTCGAAAGACCTCGGCTACAGGCAAGTGAAGAACGTCGAGTCGAGGCG
GACATGGGATCGCGACTACTACGAGGCTAAGGCAAAGGAGAGGATAGAGC
AGGGCGACGACTACCAGGAAAAGGACGAAGGGGGACCTGCAAGGAGAAGT
CAAAAGGAGGAATTCCAGCCGGCTGCCGCGGGGGCGGCGGGACCAGCAGG
CTCAGCGCGGGCTTACCTCAAGATGTCGAAAGACCTCGGCTACAGGCAAG
TGAAGAACGTCGAGTCGAGGCGGACATGGGATCGCGACTACTACGAGGCT
AAGGCAAAGGAGAGGATAGAGCAGGGCGACGACTACCAGGAAAAGGACGA
AGGGGGACCTGCAAGGAGAAGTCAAAAGGAGGAATTCCAGCCGGCTGCCG
CGGGGGCGGCGGGACCAGCAGGCTCAGCGCGGGCTTACCTCAAGACCCGA
GAGAGGAAGGTCGACCTCTCCTCCAAGCTCGGCAAGACGCAGGTAGTCAC
CGCGGCATCCACGCCGTCCCAGCAGGGAGGCTGGTACTGCGAGATCTGCA
AGTGCGGGCTCAAGGACAGCATCAACTACCTGGACCACATCAACGGCAAG
AAGCACCAGAGGGAGCTGGGCTACAGCATGCGGGTAGAGAGGTCCACCGT
CTCGCAGACCCGAGAGAGGAAGGTCGACCTCTCCTCCAAGCTCGGCAAGA
CGCAGGTAGTCACCGCGGCATCCACGCCGTCCCAGCAGGGAGGCTGGTAC
TGCGAGATCTGCAAGTGCGGGCTCAAGGACAGCATCAACTACCTGGACCA
CATCAACGGCAAGAAGCACCAGAGGGAGCTGGGCTACAGCATGCGGGTAG
AGAGGTCCACCGTCTCGCAGGTCAAGGACCGACTGAAGATGCACAAACAG
CGGGAAGAGGATCGGATTTCGGGGGCTTTGAAGAAGCCATCCGCGGAAGA
CGAGTTTGACACTAGGGTGCGGGAGGCAGAGGTCAAGGACCGACTGAAGA
TGCACAAACAGCGGGAAGAGGATCGGATTTCGGGGGCTTTGAAGAAGCCA
TCCGCGGAAGACGAGTTTGACACTAGGGTGCGGGAGGCAGAGGACAACGA
AGAGCGACGAAAGCGACAAAAGAGGGAGGCGAAACGGCTGGCGAAAAAGA
AGCAACAGGAGGAGGAGGAGGAGATGGAGTTCCAGGACCCCGACATGGCG
GCGATGATGGGCTTTGGAGGCTTCGGGGGGGGGAGCAAGAAGTAGGACAA
CGAAGAGCGACGAAAGCGACAAAAGAGGGAGGCGAAACGGCTGGCGAAAA
AGAAGCAACAGGAGGAGGAGGAGGAGATGGAGTTCCAGGACCCCGACATG
GCGGCGATGATGGGCTTTGGAGGCTTCGGGGGGGGGAGCAAGAAGTAG
back to top