mRNA_E-siliculosus-1a_M_contig96.17573.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig96.17573.1
Unique NamemRNA_E-siliculosus-1a_M_contig96.17573.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig96.17573.1 vs. uniprot
Match: A0A6H5L2B2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2B2_9PHAE)

HSP 1 Score: 352 bits (904), Expect = 1.650e-113
Identity = 201/226 (88.94%), Postives = 204/226 (90.27%), Query Frame = 3 
Query:  102 MYTRKQRWRRTRTRKQAWGDLPPELLDAMLAAGGGGMPKSVSWDHSYAAGLKIRADRAAEVAHRAAAEDSKLKAAXXXXXXXXXXXXXVEVSIPRSVSCSSLGPKRTLFARTSSSKDELGAAGGGVRRGSSAITAAQHRRRMLPHRRGVSFNTQVKMVLIPKREEFSELERVKLWWGREDYSQFRQVLIDWKRANAHRISHSDNILSINLSDIDEEEESPTGQDHS 779
            MYTRKQRWRRTRTRKQAWGDLPPELLDAMLAAGGG MPKSVSWDHSYAA LKIRADRAAEVAHRAAAEDSKL+AAXXXXXXXXXXXX VEVSIPRS SCSSLGPKRTLF RTSSSKDELGAA               H+RRML HRRGVSFNTQVKMVLIPKREEFSELERVKLWWGREDY+QFRQVLIDWKRANAHRISHSDNILSINLSDIDEEEES TGQDHS
Sbjct:    1 MYTRKQRWRRTRTRKQAWGDLPPELLDAMLAAGGGRMPKSVSWDHSYAARLKIRADRAAEVAHRAAAEDSKLRAAXXXXXXXXXXXX-VEVSIPRSASCSSLGPKRTLFPRTSSSKDELGAAXXXXXXXXXXXXXXXHKRRMLSHRRGVSFNTQVKMVLIPKREEFSELERVKLWWGREDYAQFRQVLIDWKRANAHRISHSDNILSINLSDIDEEEESATGQDHS 225
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BLAST of mRNA_E-siliculosus-1a_M_contig96.17573.1 vs. uniprot
Match: A0A835Z1A2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1A2_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.030e-21
Identity = 45/75 (60.00%), Postives = 63/75 (84.00%), Query Frame = 3 
Query:  540 RGVSFNTQVKMVLIPKREEFSELERVKLWWGREDYSQFRQVLIDWKRANAHRISHSDNILSINLSDIDEEEESPT 764
            R V+F+ +V++VLIPKR+E ++ +R +LWW R+DY++FRQVLIDWK  NA +IS +DNILSINLSD+D E++ PT
Sbjct:  107 RAVAFDPRVQVVLIPKRDEINDFDRYRLWWSRDDYAKFRQVLIDWKTINADKISPTDNILSINLSDLDAEDDEPT 181
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig96.17573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L2B2_9PHAE1.650e-11388.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z1A2_9STRA1.030e-2160.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig96contigE-siliculosus-1a_M_contig96:187298..192250 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size678
Model size780
Exons2
Ec32 orthologEc-26_005580.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig96.17573.1prot_E-siliculosus-1a_M_contig96.17573.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig96 187298..192149 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936530.4377396-CDS-E-siliculosus-1a_M_contig96:187297..1875131622936530.4377396-CDS-E-siliculosus-1a_M_contig96:187297..187513Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 187298..187513 -
1696251118.8634531-CDS-E-siliculosus-1a_M_contig96:187297..1875131696251118.8634531-CDS-E-siliculosus-1a_M_contig96:187297..187513Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 187298..187513 -
1622936530.5081263-CDS-E-siliculosus-1a_M_contig96:191687..1921491622936530.5081263-CDS-E-siliculosus-1a_M_contig96:191687..192149Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 191688..192149 -
1696251118.877977-CDS-E-siliculosus-1a_M_contig96:191687..1921491696251118.877977-CDS-E-siliculosus-1a_M_contig96:191687..192149Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 191688..192149 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936530.526055-UTR-E-siliculosus-1a_M_contig96:192149..1922501622936530.526055-UTR-E-siliculosus-1a_M_contig96:192149..192250Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig96 192150..192250 -
1696251118.8902192-UTR-E-siliculosus-1a_M_contig96:192149..1922501696251118.8902192-UTR-E-siliculosus-1a_M_contig96:192149..192250Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig96 192150..192250 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig96.17573.1

>prot_E-siliculosus-1a_M_contig96.17573.1 ID=prot_E-siliculosus-1a_M_contig96.17573.1|Name=mRNA_E-siliculosus-1a_M_contig96.17573.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=226bp
MYTRKQRWRRTRTRKQAWGDLPPELLDAMLAAGGGGMPKSVSWDHSYAAG
LKIRADRAAEVAHRAAAEDSKLKAAAAAAAVAAAKGKGVEVSIPRSVSCS
SLGPKRTLFARTSSSKDELGAAGGGVRRGSSAITAAQHRRRMLPHRRGVS
FNTQVKMVLIPKREEFSELERVKLWWGREDYSQFRQVLIDWKRANAHRIS
HSDNILSINLSDIDEEEESPTGQDHS
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mRNA from alignment at E-siliculosus-1a_M_contig96:187298..192250-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig96.17573.1 ID=mRNA_E-siliculosus-1a_M_contig96.17573.1|Name=mRNA_E-siliculosus-1a_M_contig96.17573.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=4953bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:187298..192250- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
AAAAGATTGTTTTGTCCATGTAGGCAGCTGCTCGTCGCACACCAGGAAGG
TTCGGAGGGTTCGTTCAGCGCTACTAAACAACCAGGCTAGGCGGCAGCAG
CATGTACACGAGGAAACAGAGATGGAGAAGGACTCGGACGCGCAAGCAGG
CCTGGGGCGACCTTCCCCCAGAGCTTCTAGACGCGATGCTCGCGGCCGGC
GGCGGCGGTATGCCCAAGTCCGTTTCCTGGGACCACAGCTACGCCGCGGG
GCTGAAGATTCGAGCAGACAGGGCGGCCGAGGTAGCGCACCGGGCAGCGG
CCGAGGACTCCAAGCTCAAAGCGGCGGCGGCGGCGGCGGCGGTGGCGGCC
GCAAAGGGCAAGGGGGTCGAGGTCAGCATCCCGCGGTCGGTGTCCTGCTC
GTCCCTCGGACCGAAGCGGACTCTGTTCGCCCGAACCTCGTCCTCCAAGG
ATGAGCTTGGGGCCGCGGGGGGCGGCGTCAGGAGAGGTAGCAGCGCGATC
ACAGCGGCTCAGCACAGGCGGCGCATGCTGCCGCACCGGAGAGGCGTGAG
CTTTAACACACAGGTGGGTGCTAGCTTGGCTCTCGAGGTAGATTCGGGGC
AGCTACTGAGCTGTTGGTTCATTACTGTGTTTTCCCCTCCTCGTACACGA
AGTAGTGATTCGTTTTTATGATCAGCACCATTCGGTCAGGTGACGGCTCT
CCCTAAAACAAAGACTAGCTTATACTGCTGTCGACGACGCTCTATGGTTC
ATGCTGCGGAGGAAAGGGGGCCATGAGGTGGTGGCGTGGTCCATGTCTGT
GTGTTCATGTTGTCCCGTCAACAGCTGTCTCTTGGTTGATTCTCGCATTC
TCTCTCTGGAACTTTCAGCCAAAGATGACCCCCAGATGCTCTCATCATCG
ACTTTTTTATTCTTTTTCATGTGTGACGAAAGCAGTTGCAAGCGGCGCAA
CCGCGCAATGCTTGCTTGGAAGTTCGGGTGTGGAACACTGCTGGCTAGCG
ACACGCCTGCTTTACGGGCTTCATCTGTGACACCCCGCTTTTCGTGTTCC
ATGGCGAACAGCTCCACCCCAAATACAAGAATAAAACACCGAGGGAAATC
TACTCACAGGGTTCAGCCAAACAGAACAGAACCTTGGTGCGGTGTCCGCT
GAAAACGTTTCCTGAGGACCCTCACACCCCCACCCTACATATCAAGATCT
CCCACCTCTAATGGTTGATTTCATGGTAACTGGGTCATGAACGTCAGCCA
CCCTCTTTCTCACGTGACTCCTCCTCTCTATCCCGCGCTGTAGATCTGTG
CTGCTGTGCCGTGGTCTTTATGTATGCATAGGTATTTCTATTTCTGCATG
CATGCATGTGGAGAAGAACTGCTGTACGTGTGTGGACGTCATCGATCATT
ACCGTCCCGATCCCTTTGTTCGAACAGCAGTCAATCCCAGCCGCAGCAGC
CCACCACCCAAGGTCGTACACGTACAACATACCTTCTAAGAAATGAAAGT
CGATCGTTGTCTAAGCCCTACACAGCAGTACACGTACACAGAAGTATGTA
GGTGCGCGACGTTACCCGGAATTGCTTGTCGTGTTAGGCATAAATTACAG
CAGTATACTCGGTGCCAACGGAGTCCCTGTCCTCTTTGCAATGTGAGATA
TTTGGGTGGTCTGTTGTCTTCGCATCTGTACCAGCCCTGACGCGGACCGC
TCTCCGTGGTCACAGGCCAACTACCGTATACGACACAAGATGACACACCC
CTTGGACTGATTTTCAAAGCTCGATTTATCAACAGCAGAAAGAGCCGCAG
CGCCGAAAACGGCGGCGTTGAAGCCGTCTGGTCGAGAGCTCTCCGAAAGC
GTATCGTTTCGTTTATTTTTTGATGCATCCTCTTCGTCGTGGAGTAATCG
AGTTTTGCAAATTGGTCGAGGGGGTGTGTTATCTTGTGTCGTGTACGGTA
GGTACCCGAAGAGGATTGTGCGCATACAGCAGTACATTCCTCTGTGAGAG
GGGCTTGACGACAACAACCGCGCCGCCTTTAAAGCATGCGTGTGCCTACA
TACGTATACCACCACACAGGTAGGTACATAGAAGTAGAACAAGCAGTGTA
GTTCAACCGCACAACCCACACCTGCTTCCTCTACACTCCCAGCAGAACAC
ATGCAACAACAGCAGTCTGATACACAAGGTGCCAACCAAATGGTCCTTGT
TGAGTATTGTACGTTCTCCACACGGGAGAGGTATTTTCGCAACATGCTGC
TCGGAGATTTCATTGCTATTTCTTACCCGGTATAGAACTACAGGGGAGGA
TGTAAGATGTATGCATAGGTTACCTGTGCAGATGTTGTTGTACCCTAAGC
ACCAGCTGCTATGACTGATATACATCATCAGTGTATAGACTTAAAAAGAC
TCGATTTAAGTCCAGTACCCAGCCGGTTTCCCTCAACTCACTGAAAAGAC
TCCCCCACATCCCGTTCGAACGTGGGTATATCTCGAACGGGTTATTTCTT
CCTGTGTGTGTATTTACTTTTCCTAATATTTCCTCGACTGCTGTACTAAT
CCTTGAGTCGATATGGGTTCGTCGTGCTTCTTTTAGAACATACCCCACTG
TAGTAATAAGAATCGCAGTCACAGAGAGACCACCCGTTCCAGATAATGCC
CCACACGAAAGGATGACTTTCAGTCTTGGCAGGTGAGTGTTGGAGAAGAA
CCTGTCTGACTTACCTCGAGTCTGTTTAAGCGTATGCATGCCAGGTATGC
ATATGTGTTCACGAAGCATCCGCGATGCCAGCGGATAAGAAATTACCCGC
TCTACAGCAAACGCATCTATACTGCTGCTGTGGGTGTGTGCCGCTTTTCA
TATATTTCCCGTCCGTTCCGTCAGTGAAGGGATATTCAACAACCCGTGCG
TTCAACAAGTAAATTACAGAGGAAAACGCGCAAGTAAACAACGAAGATCA
TGGGTTCGGTAAGTAGGCCATTTTTTTGGGAAATTCCTGTTGTACTCTGT
AGTCTCGTGCCACCGGCCAAGCTGGGGTACCCGGTTCATGTCCCTATGGC
CTGCAACACGCTACATGTACGACATTGCGGCTGACACCTGATCGATCGCC
CATCTCCCCGGGAATCGAGGTATTGGACACACGTACCCCCAAAAAGTGCT
CTTTCGTTTCCCGGCTAGTTTAAACCCTCCCGGCACTGCGAATGAAGAAC
ATAAACGTACGTTCTATGCGTACGGCAGCACGATGTTCTCTGAATCGTTG
CGAAATGATGGCCTCACGGGGAGTTCTTCCCCCTTATTTTTCCGTGATCT
GTACAGCAGTAGCTGCCCAAGGTTGCCCCCCCCCCGCTGAGTTTCCCAAT
AAGAAAAAAGAAATGGGCTCGAGTGTAAAAATTTAGGGCCTCTGTTGACG
TTCAACAGTTAAACCTATTTGAGCACCCAATTTGTGGATGGGCCTAAGTT
TGGTTTTGGGCCAAAAAGTGCGTCGCTGTAACATAATTTTACCGCACCCA
AGTATTAATCGAGGTTTAGCAACACCCAAATACGGTTGAATCGCCGCAGC
GAGGTGACGTGGTCACCAAACAGTTATACAGAGCGATAGACAATGTGCAT
CACACAGGAGCTGTTAGAATGGAGTATCAGCACACACACGAAGCTAATCA
TCAGCAGGTGGTGCCAGTGGTCCAAGCCTTATCCTCAGGCGTGCTCTACA
ACTTTTGTTTGGACTCTCGCTGCACACGACCGGCCGTTGGCTTTTGACAT
CGCACATTTTGGGAAGCAACCTCCACAGCAACCCAACCTGCGCGAAGAGT
TGACACGCTCACAGAATCATTGCGATGCAGCTATTTCCCAGCAGCGGGCA
GTGGGCGATGCGTGTGGGTGCCGCACGGCCAGTGTCCCACATGCGGTCCC
GTCAGGGGTAACGCCAACACGAGTTCAGCTCGTCATGGGGGGTGCAAAAG
GGGCGAAGTCCAGCTCGTGTACTTCGATTCAGCATAAAACGGTTCAATTT
GCAATTGTTTTTGGTGCACCCAATATCAAAGTCCCACTTTTACGGGCAGA
GAAAGCGTCATCGTGTTTTTCCCTGTTGACCAATCAGCGTCTTTCGCCCC
CGATACCCCCCCAAACTTAGCTACTTGCAGGGCCTCTATTTTTGTTGCAA
TTTTTCACATTAAAACAGGCCCGTAAATGGAAAGTTTGAGGCCCCCATCT
TGAAGTCGCTGCACTGCTGCTGTTTAGTTTTGTTGGGAACATTTCCCCTC
TCTGCCAAACGTTGCCCCCCGCCCCCCCCCTCCCCCCCGCCCTTTATGGG
GAGCTTTGAGACACACACGAGCCCTTGAAATGACTCCAAATCTTGCGAGT
TCTGAACGCCTTTGGGTTGAACCCCCCAAGAGAAGTTGGCCCAGAATATG
AAGACTTTGAGTCAGCCCGTTCGTGCCGTGGCTGAAATGTTTCGATCAAA
AGCATGAAAGTTCGCTCACCCAAAAGTAGAGATGGCCCCGGGGCGTGCTT
TTTCATCATGGCGTTTGACACACACCCCGCTCCGTGATAGGAGGACGGAG
TAAGCCGCGGATATGCACACGGCTCAACGAGCTATAATAGCTGCCCAAAT
AGTGTGTCTGCTCCTGGGATGGTGCCTGTTGTCGCTCCATGTGCGCACCC
TGCTTACCCCCCCCTCCATGCCCTTTGGTGGAAACTGCCTCCTCCTCCTC
CTCCTCCTCGTTCGCGGCGTGTACCCCCTGTACACAGGTGAAAATGGTCC
TTATCCCCAAGAGGGAGGAGTTTAGCGAGCTGGAGAGGGTGAAGCTGTGG
TGGGGGCGAGAGGACTACTCGCAGTTCCGGCAGGTGCTGATCGACTGGAA
GCGGGCGAACGCGCACCGCATCTCGCACTCGGACAACATCCTGTCCATCA
ACCTCAGCGACATCGACGAGGAAGAGGAGTCCCCCACCGGCCAGGACCAT
TCA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:187298..192250-

>mRNA_E-siliculosus-1a_M_contig96.17573.1 ID=mRNA_E-siliculosus-1a_M_contig96.17573.1|Name=mRNA_E-siliculosus-1a_M_contig96.17573.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1356bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:187298..192250- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTACACGAGGAAACAGAGATGGAGAAGGACTCGGACGCGCAAGCAGGC
CTGGGGCGACCTTCCCCCAGAGCTTCTAGACGCGATGCTCGCGGCCGGCG
GCGGCGGTATGCCCAAGTCCGTTTCCTGGGACCACAGCTACGCCGCGGGG
CTGAAGATTCGAGCAGACAGGGCGGCCGAGGTAGCGCACCGGGCAGCGGC
CGAGGACTCCAAGCTCAAAGCGGCGGCGGCGGCGGCGGCGGTGGCGGCCG
CAAAGGGCAAGGGGGTCGAGGTCAGCATCCCGCGGTCGGTGTCCTGCTCG
TCCCTCGGACCGAAGCGGACTCTGTTCGCCCGAACCTCGTCCTCCAAGGA
TGAGCTTGGGGCCGCGGGGGGCGGCGTCAGGAGAGGTAGCAGCGCGATCA
CAGCGGCTCAGCACAGGCGGCGCATGCTGCCGCACCGGAGAGGCGTGAGC
TTTAACACACAGATGTACACGAGGAAACAGAGATGGAGAAGGACTCGGAC
GCGCAAGCAGGCCTGGGGCGACCTTCCCCCAGAGCTTCTAGACGCGATGC
TCGCGGCCGGCGGCGGCGGTATGCCCAAGTCCGTTTCCTGGGACCACAGC
TACGCCGCGGGGCTGAAGATTCGAGCAGACAGGGCGGCCGAGGTAGCGCA
CCGGGCAGCGGCCGAGGACTCCAAGCTCAAAGCGGCGGCGGCGGCGGCGG
CGGTGGCGGCCGCAAAGGGCAAGGGGGTCGAGGTCAGCATCCCGCGGTCG
GTGTCCTGCTCGTCCCTCGGACCGAAGCGGACTCTGTTCGCCCGAACCTC
GTCCTCCAAGGATGAGCTTGGGGCCGCGGGGGGCGGCGTCAGGAGAGGTA
GCAGCGCGATCACAGCGGCTCAGCACAGGCGGCGCATGCTGCCGCACCGG
AGAGGCGTGAGCTTTAACACACAGGTGAAAATGGTCCTTATCCCCAAGAG
GGAGGAGTTTAGCGAGCTGGAGAGGGTGAAGCTGTGGTGGGGGCGAGAGG
ACTACTCGCAGTTCCGGCAGGTGCTGATCGACTGGAAGCGGGCGAACGCG
CACCGCATCTCGCACTCGGACAACATCCTGTCCATCAACCTCAGCGACAT
CGACGAGGAAGAGGAGTCCCCCACCGGCCAGGACCATTCAGTGAAAATGG
TCCTTATCCCCAAGAGGGAGGAGTTTAGCGAGCTGGAGAGGGTGAAGCTG
TGGTGGGGGCGAGAGGACTACTCGCAGTTCCGGCAGGTGCTGATCGACTG
GAAGCGGGCGAACGCGCACCGCATCTCGCACTCGGACAACATCCTGTCCA
TCAACCTCAGCGACATCGACGAGGAAGAGGAGTCCCCCACCGGCCAGGAC
CATTCA
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