mRNA_E-siliculosus-1a_M_contig96.17570.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig96.17570.1 vs. uniprot
Match: D8LQA3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQA3_ECTSI) HSP 1 Score: 1989 bits (5154), Expect = 0.000e+0 Identity = 1162/1310 (88.70%), Postives = 1176/1310 (89.77%), Query Frame = 1
Query: 37 MAGNGYGNDRGGYVYDEXXXXXXXXXXXXXXGGRNFADRGYSSYDGRYDINNAYQTTRYDPSSPRGLGGPHDRGVYAPPTATIINNNRGVGSSQYPSRRGGPPGATRYPNPSTAYDNFSYPPSPRPPPSPRQPQGFGGVAGQLLNAAGQLSPSNKRASGGRAVFDDEVTVGPAAAGGEKSAARLKSTSXXXXXXXASRFGLYAPSGGGSGEIPGAGSSRGDDGDGGGNARFRDRGRSQIARAPTNPRYQERTRNSFEERDQQLLXXXXXXRAPHQRKASPXXXXXXXXXSARAPATAAVXXXXEXHSGARTPXXXXXXXXXXXXXXXXXXPRPPATPADPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPSRPPLSWITIERAGKRRLGVPAEERRTKLGGENETVSPFQGCPIHDCPMGSSDGISVSWMARHLESHTKVAMEKPQKELYIRSSVAEILHEMCLDSEVPRAQRKFERRKMSRALLDTPRAGIGHLAGIMETVVTGDNKSPHVRRCAHDLAVGGCEGITREGTIVRCDKCMAWYHVSCGQMVRGDGISSEEAREETLCRTCARITIGAPQGKDPTATLQKQLSLVREKRTKMMEFLEGDVETGAPCGVFDLPLNIRDVSTAGGVGPKDRNANGPAAGGNSSGGNGGVGKRDNRPPCAAASCGRESRQDSKFCCDACGVLHAEAFLAKAIRHHVEESAGIDRGRRLRETRELKTRKQQVGLAMKKVEFPRVPGFKTERETALHGLVVRRCRLWQRLIEIGAYWEKVSGSRVGVLAATKTAAQXXXXXXXXXXXXXXXXXXXVDPALSRSAPERQAGGRDRGGSIASASSSGGVQVELDVGGASIAVAAKNNTAAASAGQQKAEVPGAGKEVVGVXXXXXXXXXXXXXGTEGQGASNGCVGWEGGGAKKRTREDGDVSPQQAAKSLKQTSNGEAANGIDVGGDGAAIPEPPSAA-AMGAQRKGKGKAALDPQATESPTAAMEVSSADPEAEIDIGLEGPDTMAEIAGQAWTYGSLDKERVLWYCPPGGREADRCANGEQLQAYLRERYGNGRVPGQFTFSGKDAPPHWERVDVRRPDNGSLIAKGKDKAVVPPPPSGGVQNFTCVYCGEETGPRVSEHLERCYRKTTAMRNERLKHASLRPLPGNHFLQGGSRLGAASVTEPVSVPPSAALDSPAAIGRQLLSRRISYANFDSLPDPSRFQLHHDLKGWRESPSRLDFLYKELVRQRNAAIYELQALDREEAELEVHLRHDWMKDDLRSIPRMRINYL 3963
MAGNGYGNDRGGYVYDE G RNFADRGYSSYDGRYDINNAYQTTRYDPSSPRGLGGPHDRGVYAPPTATIINNNRGVGSSQYPSRRGGPPGATRYPNPSTAYDNFSYPPSPRPPPSPRQPQGFGGVAGQLLNAAGQLSPSNKRASGGRAVFDDEVT+GPAAAGGEKSAARLKSTS XXXXXXASRFGLYAPSGGGSGEIPGAGSSRGDDGDGGGNARFRDRGRSQIA+APTNPRYQERTRNSFEERDQQ+ RAPHQR XXXXXXXXX XXXX X XXXXXXXXXXXXXXXXXX TPA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPSRPPLSWITIERAGKRRLGVPAEERRTKLGGENETVSPFQGCPIHDCPMGSSDGISVSWMARHLESHTKVAMEKPQKELYIRSSVAEILHEMCLDSEVPRAQRKFERRKMSRALLDTPRAGIGHLAG++ETVVTGDNKSPHVRRCAHDLAVGGCEGITREGTIVRCDKCMAWYHVSCGQMVRGDGISSEEAREETLCRTCARI IGAPQGKDPTATLQKQLSLVREKRTKM+EFLE DVETGAPCGVFDLPLNIRDVSTAGGVGPKD NANGP AGGNS+GGNGGV KRDNRPPCAAASCGRESRQDSKFCCDACGVLHAEAFLAKAIRHHVEESAGIDRGRRLRETRELKTRKQQVGLAMKKVEFPRVPGFKTERETALH LVVR+CRLWQRLIEIGAYWEKVSGSRVGVLAAT+TAAQ XXXX VDPALSRSAPER AGGRDRGG IASASSSGGVQVELDVG +AEV GAGKEVVG XXXXXXXXXXXXXGTEGQGASNGCVGWEGGGAKKR REDGD PQQAAKSLKQTSNGEAA+GIDVGG GAAI EPPSAA AMGAQ KGKGKAALDPQA ESPTAAMEVSSADPEAEID GLE PDTMAEIAGQAWTYGS KERVLWYCPPGG EADRC + EQLQAYLRERYGNGRVPGQFTFSGKDAPP WERVD RRPDNGSLIAK KDKA VPPPPSGGVQNF CVYCGEETGP VSEHLERCYRKTTAMRNERLKHA+LRPL NHFLQGGSRLGAASVTEPVSVPPSAALDSPAAIGRQLLSRRI+YANFDSLPDPSRFQLHHDLKGWRESPSRLDFLYKELVRQRNAAIYELQALDREEAELEVHLRHDWMKDDLRSIPRMRINYL
Sbjct: 1 MAGNGYGNDRGGYVYDEDDDDGDYSAQQHGHGSRNFADRGYSSYDGRYDINNAYQTTRYDPSSPRGLGGPHDRGVYAPPTATIINNNRGVGSSQYPSRRGGPPGATRYPNPSTAYDNFSYPPSPRPPPSPRQPQGFGGVAGQLLNAAGQLSPSNKRASGGRAVFDDEVTIGPAAAGGEKSAARLKSTSAXXXXXXASRFGLYAPSGGGSGEIPGAGSSRGDDGDGGGNARFRDRGRSQIAKAPTNPRYQERTRNSFEERDQQMREQKHQQRAPHQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPAX---------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPSRPPLSWITIERAGKRRLGVPAEERRTKLGGENETVSPFQGCPIHDCPMGSSDGISVSWMARHLESHTKVAMEKPQKELYIRSSVAEILHEMCLDSEVPRAQRKFERRKMSRALLDTPRAGIGHLAGMIETVVTGDNKSPHVRRCAHDLAVGGCEGITREGTIVRCDKCMAWYHVSCGQMVRGDGISSEEAREETLCRTCARIAIGAPQGKDPTATLQKQLSLVREKRTKMLEFLEEDVETGAPCGVFDLPLNIRDVSTAGGVGPKDGNANGPDAGGNSNGGNGGVDKRDNRPPCAAASCGRESRQDSKFCCDACGVLHAEAFLAKAIRHHVEESAGIDRGRRLRETRELKTRKQQVGLAMKKVEFPRVPGFKTERETALHALVVRKCRLWQRLIEIGAYWEKVSGSRVGVLAATRTAAQTSSRKATAXXXXSVTASGAVDPALSRSAPERLAGGRDRGGVIASASSSGGVQVELDVGXXXXXXXXXXXXXXXXXXXXEAEVSGAGKEVVGXXXXXXXXXXXXXXGTEGQGASNGCVGWEGGGAKKRAREDGDGPPQQAAKSLKQTSNGEAASGIDVGGGGAAITEPPSAAVAMGAQSKGKGKAALDPQAAESPTAAMEVSSADPEAEIDTGLEVPDTMAEIAGQAWTYGSFGKERVLWYCPPGGGEADRCTSSEQLQAYLRERYGNGRVPGQFTFSGKDAPPQWERVDARRPDNGSLIAKDKDKAAVPPPPSGGVQNFMCVYCGEETGPWVSEHLERCYRKTTAMRNERLKHATLRPLRDNHFLQGGSRLGAASVTEPVSVPPSAALDSPAAIGRQLLSRRIAYANFDSLPDPSRFQLHHDLKGWRESPSRLDFLYKELVRQRNAAIYELQALDREEAELEVHLRHDWMKDDLRSIPRMRINYL 1295
BLAST of mRNA_E-siliculosus-1a_M_contig96.17570.1 vs. uniprot
Match: A0A6H5L313_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L313_9PHAE) HSP 1 Score: 1846 bits (4782), Expect = 0.000e+0 Identity = 1112/1280 (86.88%), Postives = 1138/1280 (88.91%), Query Frame = 1
Query: 130 GGRNFADRGYSSYDGRYDINN--AYQTTRYDPSSPRGLGGPHDRGVYAPPTATIINNNRGVGSSQYPSRRGGPPGATRYPNPSTAYDNFSYPPSPRPPPSPRQPQGFGGVAGQLLNAAGQLSPSNKRASGGRAVFDDEVTVGPAAAGGEKSAARLKSTSXXXXXXXASRFGLYAPSGGGSGEIPGAGSSRGDDGDGGGNARFRDRGRSQIARAPTNPRYQERTRNSFEERDQQLLXXXXXXRAPHQRKASPXXXXXXXXXSARAPATAAVXXXXEXHSGARTPXXXXXXXXXXXXXXXXXXPRPPATPADPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPSRPPLSWITIERAGKRRLGVPAEERRTKLGGENETVSPFQGCPIHDCPMGSSDGISVSWMARHLESHTKVAMEKPQKELYIRSSVAEILHEMCLDSEVPRAQRKFERRKMSRALLDTPRAGIGHLAGIMETVVTGDNKSPHVRRCAHDLAVGGCEGITREGTIVRCDKCMAWYHVSCGQMVRGDGISSEEAREETLCRTCARITIGAPQGKDPTATLQKQLSLVREKRTKMMEFLEGDVETGAPCGVFDLPLNIRDVSTAGGVGPKDRNANGPAAGGNSSGGNGGVGKRDNRPPCAAASCGRESRQDSKFCCDACGVLHAEAFLAKAIRHHVEESAGIDRGRRLRETRELKTRKQQVGLAMKKVEFPRVPGFKTERETALHGLVVRRCRLWQRLIEIGAYWEKVSGSRVGVLAATKTAAQXXXXXXXXXXXXXXXXXXXVDPALSRSAPERQAGGRDRGGSIASASSSGGVQVELDVGGASIAVAAKNNTAAASAGQQKAEVPGAGKEVVGVXXXXXXXXXXXXXGTEGQGASNGCVGWEGGGAKKRTREDGDVSPQQAAKSLKQTSNGEAANGIDVGGDGAAIPEPPSAAAMGAQRKGKGKAALDPQATESPTAAMEVSSADPEAEIDIGLEGPDTMAEIAGQAWTYGSLDKERVLWYCPPGGREADRCANGEQLQAYLRERYGNGRVPGQFTFSGKDAPPHWERVDVRRPDNGSLIAKGKDKAVVPPPPSGGVQNFTCVYCGEETGPRVSEHLERCYRKTTAMRNERLKHASLRPLPGNHFLQGGSRLGAASVTEPVSVPPSAALDSPAAIGRQLLSRRISYANFDSLPDPSRFQLHHDLKGWRESPSRLDFLYKELVRQRNAAIYELQALDREEAELEVHLRHDWMKDDLRSIPRMRINYL 3963
GGRNFADRGYSSYDGRYDINN YQ+TRYD SSPRG+GGPHDRGV ATIINNNRGVGSSQ+PSRRGGPPGATRYPNPSTAYDNFSYPPSPRP RQPQGFGGVAGQLLNAAGQLSPSNKRASGGRAVFDDEVT+GPAAAGGEKSAARLKSTS XXXXXX SRFGLYAPSGGGSGEIPGAGSSRGD GDGGG+ RFRDRGRSQIARAPTNPRYQ+ TR SFEERD+Q+ RAPHQRKAS XXXXXXX XXXX X XXXXXXXXXXXXXXXXX PRPPA PADPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX APSRPPLSWITIERAGKRRLGVPAEERR LGGENETVSPF+GCPIHDCPMGSSDGISVSWMARHLESHTKVAME+PQKELYIRSSVAEILHEMCLDSEVPRAQRKFERRKM+RALLDTPRAGIGHLAG+MET+VTGDNK PHVR H+ G CEGITREGTIVRCDKCMAWYHVSCGQMVRGDGISSEEAREETLCR CARITIGAPQGKDPTATLQKQLSLVREKRTKM+EFLE DVETG PCGVFDLPLNIRDV+TAGGV KD NA GPAAGGNS+GGNGGV RDNRPPCAAASCGRESRQDSKFCCDACGVLHAEAFLAKAIRHHVEESAGIDRGRRLRETRELKTRKQQVGLAMKKVEFPRVPGFKTERETALHGLV RRCRLWQRLIEIGAYWEKVSGSRVGVLAATKTAAQ XXXXXXXXXX DPALSRSAP+RQ G RDRGGSIAS S SGG+QVELDVGG SIA AAKN+TA XXXXXXXXXXXXX QGASN CVGWEGGGAKKR RE GD QQAA SLKQTSNGEAA+GIDVGG AAIPE PSAAAMGA KGKGKAALDPQA ES TAA +VSSADPEAEID GLEGPDT AEIAG+AWTYGS DKERVLWYCPPGGREADRC N EQLQAYLRERYGNGRVPGQFTFSGKDAPPHWERVD PDNGSLIAK KDKA VPP PSGGVQNFTCVYCGEETGPRVSEHLERCYRKTTAMRNERLKHA+LRPLP NHFLQGGSRLGAASVTEPVS+PPSA LDSPAAIGRQLLSRRI+YANFDSLPDPSRFQLHHDLKGWRESPSRLDFLYKELVRQRNAAIYELQALDREEAELEVHLRHDWMKDDLRSIPRMRINYL
Sbjct: 8 GGRNFADRGYSSYDGRYDINNNNGYQSTRYDTSSPRGVGGPHDRGV-----ATIINNNRGVGSSQHPSRRGGPPGATRYPNPSTAYDNFSYPPSPRPXXXXRQPQGFGGVAGQLLNAAGQLSPSNKRASGGRAVFDDEVTIGPAAAGGEKSAARLKSTSAXXXXXXXSRFGLYAPSGGGSGEIPGAGSSRGDLGDGGGSDRFRDRGRSQIARAPTNPRYQDGTRKSFEERDEQVREQKHQQRAPHQRKASAPPXXXXXXXX-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPRPPAAPADPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA---APSRPPLSWITIERAGKRRLGVPAEERRMMLGGENETVSPFRGCPIHDCPMGSSDGISVSWMARHLESHTKVAMEQPQKELYIRSSVAEILHEMCLDSEVPRAQRKFERRKMARALLDTPRAGIGHLAGVMETMVTGDNKDPHVR---HEPQEGXCEGITREGTIVRCDKCMAWYHVSCGQMVRGDGISSEEAREETLCRACARITIGAPQGKDPTATLQKQLSLVREKRTKMLEFLERDVETGTPCGVFDLPLNIRDVNTAGGVELKDGNAKGPAAGGNSNGGNGGVDMRDNRPPCAAASCGRESRQDSKFCCDACGVLHAEAFLAKAIRHHVEESAGIDRGRRLRETRELKTRKQQVGLAMKKVEFPRVPGFKTERETALHGLVARRCRLWQRLIEIGAYWEKVSGSRVGVLAATKTAAQTSSRKAXXXXXXXXXXSGAFDPALSRSAPQRQTGVRDRGGSIASVSGSGGIQVELDVGGCSIAAAAKNDTA--EXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGASNICVGWEGGGAKKRAREGGDGPSQQAANSLKQTSNGEAASGIDVGGGSAAIPETPSAAAMGAHSKGKGKAALDPQAAESTTAATDVSSADPEAEIDKGLEGPDTTAEIAGKAWTYGSFDKERVLWYCPPGGREADRCTNREQLQAYLRERYGNGRVPGQFTFSGKDAPPHWERVDAHCPDNGSLIAKHKDKAAVPPSPSGGVQNFTCVYCGEETGPRVSEHLERCYRKTTAMRNERLKHATLRPLPDNHFLQGGSRLGAASVTEPVSLPPSACLDSPAAIGRQLLSRRIAYANFDSLPDPSRFQLHHDLKGWRESPSRLDFLYKELVRQRNAAIYELQALDREEAELEVHLRHDWMKDDLRSIPRMRINYL 1269 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig96.17570.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig96.17570.1 >prot_E-siliculosus-1a_M_contig96.17570.1 ID=prot_E-siliculosus-1a_M_contig96.17570.1|Name=mRNA_E-siliculosus-1a_M_contig96.17570.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=1310bp MAGNGYGNDRGGYVYDEDDDDGDYSAHQHGHGGRNFADRGYSSYDGRYDIback to top mRNA from alignment at E-siliculosus-1a_M_contig96:160143..168957- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig96.17570.1 ID=mRNA_E-siliculosus-1a_M_contig96.17570.1|Name=mRNA_E-siliculosus-1a_M_contig96.17570.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=8815bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:160143..168957- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:160143..168957- >mRNA_E-siliculosus-1a_M_contig96.17570.1 ID=mRNA_E-siliculosus-1a_M_contig96.17570.1|Name=mRNA_E-siliculosus-1a_M_contig96.17570.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=7860bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:160143..168957- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |