mRNA_E-siliculosus-1a_M_contig96.17569.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig96.17569.1
Unique NamemRNA_E-siliculosus-1a_M_contig96.17569.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig96.17569.1 vs. uniprot
Match: A0A6H5L2U2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L2U2_9PHAE)

HSP 1 Score: 387 bits (994), Expect = 9.960e-131
Identity = 205/213 (96.24%), Postives = 208/213 (97.65%), Query Frame = 3
Query:    3 PASTADALSYIDKDYDDPRMKEIVHSLIEEEMAAFEPPDYLADKPLPTTRFKSPLLKSEWARVRAEKPLDLMDTSRYDLQPPQGAAAEDEAAWKRALDNARAQTEHQHNSRLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAESVNLKRKTSQEAAERTLWNLARKRSEGFDKNVQIQLACEGLRAEVKRFKALEAAAKPPPAR 641
            PAST DALSYIDKDYDDPRMKEIVHSLIEEEMAAFEPPDYLADKPLPTTRFKSPLLKSEWARVRAEKPLD++DTSRYDLQPPQGAAAEDEAAWKRALDNARAQTEHQHN RLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAE VNLKRKTSQEAAE+TLWNLARKRSEGFDKNVQIQLACEGLRAEVKR KALEA AKPPPAR
Sbjct:   16 PASTPDALSYIDKDYDDPRMKEIVHSLIEEEMAAFEPPDYLADKPLPTTRFKSPLLKSEWARVRAEKPLDVIDTSRYDLQPPQGAAAEDEAAWKRALDNARAQTEHQHN-RLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAERVNLKRKTSQEAAEKTLWNLARKRSEGFDKNVQIQLACEGLRAEVKRLKALEAVAKPPPAR 227          
BLAST of mRNA_E-siliculosus-1a_M_contig96.17569.1 vs. uniprot
Match: A0A835YMV2_9STRA (Pre-mRNA-splicing factor SPF27 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMV2_9STRA)

HSP 1 Score: 166 bits (421), Expect = 3.520e-45
Identity = 96/199 (48.24%), Postives = 134/199 (67.34%), Query Frame = 3
Query:   18 DALSYIDKDYDDPRMKEIVHSLIEEEMAAFEPPDYLADKPLPTTRF---KSPLLKSEWARVRAEKPLDLMDTSRYDLQPPQGAAAEDEAAWKRALDNARAQTEHQHNSRLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAESVNLKRKTSQEAAERTLWNLARKRSEGFDKNVQIQLACEGLRAEVKRFK 605
            DAL YIDK+YDDPR +E+VH LIEEEMA F P +YL D+ +        K  +L +E ARV    P+  +D +RY+++ P GA AED  AW+ A+ NA+AQ  HQ+N R LNLELL NYGA+ WL HNKA  G E+ + +  KR R+EA+++N +R+ +Q    + LW+L R+R E  DKN+QI LA   L+ ++K++K
Sbjct:    9 DALPYIDKEYDDPRTQEVVHGLIEEEMARFRPKEYLRDRAIGHYNLAFKKGSILAAELARVSKGVPMAALDQTRYEVRAPDGAKAEDLGAWRDAVRNAKAQLGHQYN-RQLNLELLGNYGANAWLHHNKALAGMESNMVATGKRLRDEADNINAQRQEAQTGLGQKLWHLDRQRVETADKNLQIALANAALQQQLKKYK 206          
BLAST of mRNA_E-siliculosus-1a_M_contig96.17569.1 vs. uniprot
Match: A0A5J4YGH3_9CHLO (Pre-mRNA-splicing factor SPF27 protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4YGH3_9CHLO)

HSP 1 Score: 119 bits (299), Expect = 3.980e-27
Identity = 82/203 (40.39%), Postives = 123/203 (60.59%), Query Frame = 3
Query:    6 ASTADALSYIDKDYDDPRMKEIVHSLIEEEMAAF--EPPDYLAD-KPLPTTRFKS-PLLKSEWARVRAEKPLDLMDTSRYDLQPPQGAAAEDEAAWKRALDNARAQTEHQHNSRLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAESVNLKRKTSQEAAERTLWNLARKRSEGFDKNVQIQLACEGLRAEVKRF 602
            A   DAL YID    D R +     LI+EE+     +P DYLA   PLP +RF+  P+L+ E+ARV+A K ++ MDTSR+ L PP  +   D +AW+ A DNA +Q EHQ+N RLLNLELL  +G +    HNK+ EG    +  + ++ +++ +S+N +RK SQE+  R L  + ++ +    KN++I +AC+ L +EV   
Sbjct:   17 AGVIDALPYIDGMTSDDRHQ--AEELIKEELKKSNKKPSDYLASFPPLPASRFEGHPILQHEFARVKAGKQMEAMDTSRFHLTPPPASKQNDFSAWRAATDNAHSQLEHQYN-RLLNLELLLRFGPNARRVHNKSLEGQVHRLEKEIEQLQQQKDSINRQRKLSQESDGRALQQMEQQYTALVAKNMEINMACQELESEVSEL 216          
BLAST of mRNA_E-siliculosus-1a_M_contig96.17569.1 vs. uniprot
Match: A0A1Y1W5F2_9FUNG (Breast carcinoma amplified sequence 2 n=2 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1W5F2_9FUNG)

HSP 1 Score: 117 bits (293), Expect = 7.370e-27
Identity = 82/202 (40.59%), Postives = 117/202 (57.92%), Query Frame = 3
Query:    6 ASTADALSYIDKDYDDPRMKEIVHSLIEEEMAAFEPPDYLADKPLPTTRFKS-PLLKSEWARVRAEKPLDLMDTSRYDLQPPQGAAAEDEAAWKRALDNARAQTEHQHNSRLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAESVNLKRKTSQEAAERTLWNLARKRSEGFDKNVQIQLACEGLRAEVKRFKA 608
            ++  D+L YIDK+YDDP M++ V SLI++EM    PP      P  TT FK+  LL+ E+ RVRA KPL   D  RY L+ P+ +  +    W+ A +NA AQ EHQ N RL+NLELLQ +GA+ W   N  +EG    +     R R+E  +VN  RK  Q  A   L ++  + +EG  K ++IQ+A   L+ E+ + +A
Sbjct:    5 SAAIDSLPYIDKEYDDPSMRDQVSSLIQKEMGRMSPPLL----PKSTTLFKNNDLLRKEYERVRAGKPLPEFDIERYKLEAPEDS--DSVGIWRSAAENAAAQLEHQ-NIRLVNLELLQQFGANSWKLSNYQKEGLLRNIEKATDRHRDEGINVNKARKYEQTEAGIRLRDIEERWTEGVKKCIEIQVASSELKGEIAQLEA 199          
BLAST of mRNA_E-siliculosus-1a_M_contig96.17569.1 vs. uniprot
Match: A9SH09_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9SH09_PHYPA)

HSP 1 Score: 117 bits (293), Expect = 2.000e-26
Identity = 84/202 (41.58%), Postives = 119/202 (58.91%), Query Frame = 3
Query:   12 TADALSYIDKDYDDPRMKEIVHSLIEEEM--AAFEPPDYLAD-KPLPTTRFKS-PLLKSEWARVRAEKPLDLMDTSRYDLQPPQGAAAEDEAAWKRALDNARAQTEHQHNSRLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAESVNLKRKTSQEAAERTLWNLARKRSEGFDKNVQIQLACEGLRAEVKRFK 605
            T DAL YID DY DP++K  V  +I EEM  ++ +P D+LA+  P+P+   +  P+L  E+ RVRA K    +D SRY L+PP      D  AWK A+ NA+AQ +HQ   RL NLEL+ NYG + W+ HN+  E  +A +   A   + E E +N +RK +Q+AA   L  L+ +  E   KN+ I+ AC  L AEV + +
Sbjct:   31 TVDALPYIDHDYADPKVKAEVDKMIAEEMRLSSKKPSDFLAELPPVPSINAQDHPMLAKEFDRVRAGKAPVALDLSRYGLEPPPVNKRNDVGAWKSAVQNAKAQLQHQ-TLRLENLELMLNYGTTAWIVHNQHLEAFQARLRDTALEYQREIEILNRERKLNQQAAAVELNLLSSQWKEISQKNLDIEEACLKLEAEVLKLR 231          
BLAST of mRNA_E-siliculosus-1a_M_contig96.17569.1 vs. uniprot
Match: UPI001FB0803B (pre-mRNA-splicing factor SPF27 homolog n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB0803B)

HSP 1 Score: 116 bits (291), Expect = 4.690e-26
Identity = 83/204 (40.69%), Postives = 117/204 (57.35%), Query Frame = 3
Query:    6 ASTADALSYIDKDYDDPRMKEIVHSLIEEEM--AAFEPPDYLAD-KPLPTTRFKS-PLLKSEWARVRAEKPLDLMDTSRYDLQPPQGAAAEDEAAWKRALDNARAQTEHQHNSRLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAESVNLKRKTSQEAAERTLWNLARKRSEGFDKNVQIQLACEGLRAEVKRFK 605
            A   DAL YID DY DPR+K+ V  L+EEEM  ++ +P D+L D  PLP + F++ P+L  E+ RVRA KP   +D SRY L+ P      DE AWK+AL  A+   +HQ   RL NL+L+  YG+ +W  HN+  E   + V ++     E+ E VN +RK  Q+ A   L  L+ +  E   KN++IQ AC  +   V+  K
Sbjct:   29 AEMMDALPYIDDDYGDPRVKDEVDRLVEEEMRRSSKKPSDFLKDLPPLPNSNFENHPMLAREYERVRAGKPPVPLDMSRYGLETPSVNKRNDETAWKQALQKAQRLLQHQV-IRLENLDLISKYGSDVWKLHNQRLEVLLSRVQAETAEINEKIEVVNRERKYQQQNASYELNALSAQWKELCQKNIEIQAACATIENHVEEMK 231          
BLAST of mRNA_E-siliculosus-1a_M_contig96.17569.1 vs. uniprot
Match: A0A7J7P6K5_9MAGN (Uncharacterized protein n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7P6K5_9MAGN)

HSP 1 Score: 115 bits (287), Expect = 2.060e-25
Identity = 79/200 (39.50%), Postives = 120/200 (60.00%), Query Frame = 3
Query:   18 DALSYIDKDYDDPRMKEIVHSLIEEEM--AAFEPPDYLAD-KPLPTTRFKS-PLLKSEWARVRAEKPLDLMDTSRYDLQPPQGAAAEDEAAWKRALDNARAQTEHQHNSRLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAESVNLKRKTSQEAAERTLWNLARKRSEGFDKNVQIQLACEGLRAEVKRFK 605
            DAL YID DY DP++KE V  LIEEEM  +  +P D+L D  PLP + F++ P+L  E+ RVRA KP   MDTSRY L+PP      D  AWK+ L+NA++  +HQ   RL NL+L+  + A +W  +N+  E   + + + A+   ++ E+VN +RK  Q+     L  ++ + +E   KN++IQ AC  +   +++ K
Sbjct:   26 DALPYIDDDYSDPKVKEKVDRLIEEEMRKSTKKPSDFLKDLPPLPKSNFENHPMLAREYERVRAGKPPTTMDTSRYGLEPPPVNKRNDPNAWKQHLENAQSSLQHQV-IRLENLDLMSKHVADVWKHYNQRLEAFLSRIYAMARGYNDDIETVNRERKYHQQNTAVELDAMSAQWNELCKKNIEIQTACASIENYIEKLK 224          
BLAST of mRNA_E-siliculosus-1a_M_contig96.17569.1 vs. uniprot
Match: A0A200R445_9MAGN (Pre-mRNA-splicing factor SPF27 n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200R445_9MAGN)

HSP 1 Score: 114 bits (284), Expect = 4.080e-25
Identity = 83/203 (40.89%), Postives = 118/203 (58.13%), Query Frame = 3
Query:   18 DALSYIDKDYDDPRMKEIVHSLIEEEM--AAFEPPDYLAD-KPLPTTRFKS-PLLKSEWARVRAEKPLDLMDTSRYDLQPPQGAAAEDEAAWKRALDNARAQTEHQHNSRLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAESVNLKRKTSQEAAERTLWN-LARKRSEGFDKNVQIQLAC-------EGLRAE 590
            D+L YID DY DP +KE+V  L+EEEM  +  +P DYL D  P P + F++ P+L  E+ RVRA KP   ++ SRY L+PP G    D  AWK  L+NA++  +HQ   RL NL+L+  +G  +W  HN+  E   + + + A+   E  ESVN +RK  Q+       N L+ +  E  +KN++IQ AC       EGLR+E
Sbjct:   29 DSLPYIDDDYGDPNVKEVVDKLVEEEMRRSTKKPADYLKDLPPAPKSNFENHPMLAREYERVRAGKPPVTLEMSRYGLEPPPGNKWNDANAWKLHLENAQSSLQHQI-VRLENLDLMSKHGGDIWKHHNQRLEAFLSRMQAMAQGYNERIESVNRERKYHQQQNTAVELNALSMQWKELCEKNIEIQSACAAIENHIEGLRSE 230          
BLAST of mRNA_E-siliculosus-1a_M_contig96.17569.1 vs. uniprot
Match: A0A1S3ZAD6_TOBAC (pre-mRNA-splicing factor SPF27 homolog n=4 Tax=Nicotiana TaxID=4085 RepID=A0A1S3ZAD6_TOBAC)

HSP 1 Score: 113 bits (283), Expect = 5.360e-25
Identity = 84/204 (41.18%), Postives = 117/204 (57.35%), Query Frame = 3
Query:    6 ASTADALSYIDKDYDDPRMKEIVHSLIEEEM--AAFEPPDYLAD-KPLPTTRFKS-PLLKSEWARVRAEKPLDLMDTSRYDLQPPQGAAAEDEAAWKRALDNARAQTEHQHNSRLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAESVNLKRKTSQEAAERTLWNLARKRSEGFDKNVQIQLACEGLRAEVKRFK 605
            A   DAL YID DY DP++KE V  L+EEEM  ++ +P D+L D  PLP   F++ P+L  E+ RVRA KP   +DTSRY L+ P      DE AWK++L  A+   +HQ   RL NL+L+  +G  +W  HN+  E   A + SQA    E  E+VN +RK  Q+     L  L+ +  E   KN++IQ AC  L   +++ K
Sbjct:   25 AEVIDALPYIDDDYGDPKVKEEVDRLVEEEMRRSSKKPSDFLKDLPPLPKFNFENHPMLAREYERVRAGKPPVQIDTSRYGLEVPPLNKRNDETAWKQSLQKAQRLLQHQV-IRLENLDLMSKHGPDVWKLHNQRLEAFLARMQSQAVELNEMIETVNRERKYHQQTTAYELSALSMQWKELCLKNMEIQSACGELEDHIEQLK 227          
BLAST of mRNA_E-siliculosus-1a_M_contig96.17569.1 vs. uniprot
Match: E4X7T6_OIKDI (Pre-mRNA-splicing factor SPF27 n=2 Tax=Oikopleura dioica TaxID=34765 RepID=E4X7T6_OIKDI)

HSP 1 Score: 112 bits (279), Expect = 8.290e-25
Identity = 74/199 (37.19%), Postives = 116/199 (58.29%), Query Frame = 3
Query:   18 DALSYIDKDYDDPRMKEIVHSLIEEEMAAFEPP-DYLADKPLPT-TRFKSPLLKSEWARVRAEKPLDLMDTSRYDLQPPQGAAAEDEAAWKRALDNARAQTEHQHNSRLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAESVNLKRKTSQEAAERTLWNLARKRSEGFDKNVQIQLACEGLRAEVKRFKA 608
            DAL Y D+ YD+P ++E    LIE+EM  F P  +YL   P P   +F +PLLK+E AR++A+KP++LM T RY L  P      D  AW +A++N++AQ +HQ   R+ NLEL+ +YG+  WL +N+      +   ++ ++ R++ + VN +RK +Q+ A +TL  L  + +    KN +I+     L  E    KA
Sbjct:    8 DALPYFDRGYDEPGVREAAIELIEKEMHKFPPTKNYLEHLPAPDHDKFLTPLLKAEIARIKAKKPMELMQTERYTLPAPTPGLRHDPEAWNKAVENSKAQLQHQL-VRIENLELMSDYGSQAWLKYNETLNQMVSDAQNKLQQLRKDIQEVNWQRKDTQQRAGQTLARLENEWATLVHKNYEIEEVLIKLENEKNNMKA 205          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig96.17569.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L2U2_9PHAE9.960e-13196.24Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YMV2_9STRA3.520e-4548.24Pre-mRNA-splicing factor SPF27 n=1 Tax=Tribonema m... [more]
A0A5J4YGH3_9CHLO3.980e-2740.39Pre-mRNA-splicing factor SPF27 protein n=1 Tax=Tre... [more]
A0A1Y1W5F2_9FUNG7.370e-2740.59Breast carcinoma amplified sequence 2 n=2 Tax=Lind... [more]
A9SH09_PHYPA2.000e-2641.58Predicted protein n=1 Tax=Physcomitrium patens Tax... [more]
UPI001FB0803B4.690e-2640.69pre-mRNA-splicing factor SPF27 homolog n=1 Tax=Imp... [more]
A0A7J7P6K5_9MAGN2.060e-2539.50Uncharacterized protein n=1 Tax=Kingdonia uniflora... [more]
A0A200R445_9MAGN4.080e-2540.89Pre-mRNA-splicing factor SPF27 n=1 Tax=Macleaya co... [more]
A0A1S3ZAD6_TOBAC5.360e-2541.18pre-mRNA-splicing factor SPF27 homolog n=4 Tax=Nic... [more]
E4X7T6_OIKDI8.290e-2537.19Pre-mRNA-splicing factor SPF27 n=2 Tax=Oikopleura ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig96contigE-siliculosus-1a_M_contig96:155779..159502 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size585
Model size1487
Exons3
Ec32 orthologEc-26_005540.1
Ec32 ortholog descriptionconserved unknown protein
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko00002,ko03041,ko03400,ko04131
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.A
EggNOG OGsKOG3096@1,KOG3096@2759
EggNOG free text desc.mRNA processing
GOsGO:0000375,GO:0000377,GO:0000398,GO:0000974,GO:0002218,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005730,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008380,GO:0009605,GO:0009607,GO:0009617,GO:0009620,GO:0009870,GO:0009987,GO:0010204,GO:0010467,GO:0015630,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0023052,GO:0031347,GO:0031349,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0042742,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0045088,GO:0045089,GO:0045292,GO:0046483,GO:0048518,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050832,GO:0050896,GO:0051704,GO:0051707,GO:0051716,GO:0065007,GO:0070013,GO:0071007,GO:0071011,GO:0071013,GO:0071014,GO:0071704,GO:0080134,GO:0090304,GO:0098542,GO:1901360,GO:1902494,GO:1990904
KEGG ModuleM00353,M00355
KEGG Pathwayko03040,ko04146,map03040,map04146
KEGG TC3.A.20.1,9.A.17.1
KEGG koko:K12861,ko:K13336,ko:K20161
Preferred nameBCAS2
Seed eggNOG ortholog2880.D8LQA4
Seed ortholog evalue2.8e-97
Seed ortholog score361.3
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig96.17569.1prot_E-siliculosus-1a_M_contig96.17569.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig96 155838..158659 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936529.7686055-UTR-E-siliculosus-1a_M_contig96:155778..1558371622936529.7686055-UTR-E-siliculosus-1a_M_contig96:155778..155837Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig96 155779..155837 +
1696251118.5218525-UTR-E-siliculosus-1a_M_contig96:155778..1558371696251118.5218525-UTR-E-siliculosus-1a_M_contig96:155778..155837Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig96 155779..155837 +
1622936529.8364184-UTR-E-siliculosus-1a_M_contig96:158659..1595021622936529.8364184-UTR-E-siliculosus-1a_M_contig96:158659..159502Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig96 158660..159502 +
1696251118.5633147-UTR-E-siliculosus-1a_M_contig96:158659..1595021696251118.5633147-UTR-E-siliculosus-1a_M_contig96:158659..159502Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig96 158660..159502 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936529.790681-CDS-E-siliculosus-1a_M_contig96:155837..1561091622936529.790681-CDS-E-siliculosus-1a_M_contig96:155837..156109Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 155838..156109 +
1696251118.5347886-CDS-E-siliculosus-1a_M_contig96:155837..1561091696251118.5347886-CDS-E-siliculosus-1a_M_contig96:155837..156109Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 155838..156109 +
1622936529.8104734-CDS-E-siliculosus-1a_M_contig96:157496..1575961622936529.8104734-CDS-E-siliculosus-1a_M_contig96:157496..157596Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 157497..157596 +
1696251118.5450895-CDS-E-siliculosus-1a_M_contig96:157496..1575961696251118.5450895-CDS-E-siliculosus-1a_M_contig96:157496..157596Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 157497..157596 +
1622936529.822186-CDS-E-siliculosus-1a_M_contig96:158446..1586591622936529.822186-CDS-E-siliculosus-1a_M_contig96:158446..158659Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 158447..158659 +
1696251118.5537853-CDS-E-siliculosus-1a_M_contig96:158446..1586591696251118.5537853-CDS-E-siliculosus-1a_M_contig96:158446..158659Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 158447..158659 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig96.17569.1

>prot_E-siliculosus-1a_M_contig96.17569.1 ID=prot_E-siliculosus-1a_M_contig96.17569.1|Name=mRNA_E-siliculosus-1a_M_contig96.17569.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=195bp
MKEIVHSLIEEEMAAFEPPDYLADKPLPTTRFKSPLLKSEWARVRAEKPL
DLMDTSRYDLQPPQGAAAEDEAAWKRALDNARAQTEHQHNSRLLNLELLQ
NYGASMWLGHNKAEEGTEAAVASQAKRAREEAESVNLKRKTSQEAAERTL
WNLARKRSEGFDKNVQIQLACEGLRAEVKRFKALEAAAKPPPAR*
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mRNA from alignment at E-siliculosus-1a_M_contig96:155779..159502+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig96.17569.1 ID=mRNA_E-siliculosus-1a_M_contig96.17569.1|Name=mRNA_E-siliculosus-1a_M_contig96.17569.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3724bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:155779..159502+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CGCCGGCTTCGACCGCGGACGCGTTGTCGTACATCGATAAAGATTACGAC GACCCACGGATGAAGGAGATCGTGCACTCCCTCATCGAGGAGGAGATGGC CGCCTTCGAGCCCCCGGACTACCTCGCGGACAAGCCCTTGCCCACGACGC GGTTCAAGAGCCCGCTGCTGAAGTCGGAGTGGGCTCGCGTCAGGGCGGAG AAGCCCTTGGATCTCATGGACACTTCGCGGTACGACCTCCAGCCTCCACA GGGCGCCGCTGCAGAGGACGAGGCGGCGTGGAAGCGGGCGTTGGACAACG CGCGAGCGCAAACGGAGCACCAACACAATAGGTACCTACATAGGTTGCAA CCCTATCCCATACAACTGTAGTGTGGAGTCTATCCCATCCAAATGTGGTG TGGAGTGCGATAATGTCGTTGGTGAAAGATCTCGTGTAATGGTTGAACGG GGGGGGCTTGCGTGTTTGGTGTGTACCCCTAGTACACAGGCTGTTGTGCA CCTCTGACAGAGCTCTGCTGCCTGCTGTTGTCGCCGACGAGGTGTGGTAG TGCAAGGTGTTCTGTCAGGTCGCTCTCGGCGATCTTTCCGACGCTGTCCG TCACCGGTACAGCATCAATCACATCGTAGGCGTCTCATTGCCGCGGAGAC GTTGGCCTTGGAACCGATGTCAGGAGGGGGGGGGGGGGGTCCGCTGCAAG TGAATCTACGTGCTGTAGATCGGTCAGAGTCTGCTGTTGAGGGAGCCGTT CAAGCGGCAGTACCCTTCAAAGCTTGTGTCTTCTGGCAGTATCACCAGTG ATTTCCTCATTTGCTAGCCGAACCTTCGCTTGCGCCCGGCTAGTTATGAG TTTGAGGCGTCCTTCGTTTGCTTACGCCTCCCCTTGATCCGTCCATCAAG TCTGTTGAGACACATTATCCTGGCGCCATTGGTCGGTAGATTTCCGTGGG GCGACGATACTTGTAGCGAAGGAGTGTTTTGAAGATCCCCACAGGGTGCG CTTCATTGCACACGCGCACGACATTCGTCGGCTTCTCCATGCACAAGCCG CATGTTGGGTCGCCCATGTATGTGTTGGGGAGCCCAAAGAAGGTGCCAGC GTCCCTTCCGAGAGAACACACGAAGACGTGCAGCCTTGTCTAAGCTGTCG GTGAAGCAGCTCGGTCATCTTCACCGACAGCTTCGACCCCACAAGGATGC ACGTCTTTTGTGCTTTCTCTCGGAAGGGACGATGGCACCTTCTTTGGGCT CCCCAGCGCACGCAAAGGCGACCCTCCATGGAGGCTTGAGCATGAAGAAG CGGACGCAATTGAGCGCACCACGTGGGGATCTTCAAACACTCCTTCGCTA AGCATCGTCGCCCCGCGGCGTCCTAACGAGCTCTGCTGCTGCCGGGTGTA AGGGATCGCAACCTGCTTGGACGTACTGCTCCGGCACGCTTTGTTCGTCA GGAGTACAGCACGGACACACCAAGCACCATCCATCGCTTGCGGCCATCAA ACGTGGGAGAATATACTGTATTACTGCTGTATGCACGGGTACGAGTACAA TTTTAGTCCCCCTCCTATGGCCTCTTCACAGGGCCCAAATACATCGACGG CGCTGCTGTGTTTCGTGTCTGTTGTTGATCGTTTGGTCTGCCTGCGCCTC CTCACGCACACTCGTATCCATGCCTTGCACACGTACATCTCGAACCGGTT TGTCCATTCACCGAGGAGCAGATTGCTAAACTTGGAGCTGCTGCAGAACT ACGGCGCTAGCATGTGGCTGGGCCACAACAAGGCGGAGGAGGGGACGGAG GCAGCGGTGGCGTCGCAGGTGGGGTGCTGTTGCTCGTGGCCGTCGTTGTC TCTGGTTACGTTTGAAAAGTCATTTGGTACGGCCAAGGTATGAATGATCG TACAATACACGCCAGAAGGCGTGCAAGTTCTTCCTCAGCAAGCTACCTAC GTAACAACACATGATACCCGGCACAATTGTGTACGTGTGCGCTTGCCAAG CTCCTTCTTTCCCCAACCCACGCTCTGTCTGGTAAGAAACAATGGGCTTG AGATCGAGCTCGGTCCCCCCCGAGCTATGCTACAGTATTTTTGCACAGAA CGGTCGGGATACTGTACGTTCAATATCGGGGCTATTGTTACGGTACAGTA CGTCATTGGAAGCACGAGGGCGTGCTTGCATTTTGTTAGCCGTGGCCCGG AATCGAAAGAAGCCCCCAAGTATCGGTGGCTCTCCAGGGAGCAAGGACAG TGTTCCATTGCTCAATCGAAAAATGACATGTATGTGACGTGAGGGCTCGT CCTCGACAAACGTTAGGGAGACGTGATTCCTTTTCAAACGATACCTCCGC TGTGTTGTGACGTACTTTGACTCTATGCTGTCACATTGAATGATGGGCAG CTGTATAGGTCGTGAAAGTCTTGCCTTGATAGCTAAATACTTTTGTTGGC CCCTGGCGGACTGATTTGAATTACTGATTTGAATTACTATTTCAGCCTAC TATTTCAGTTATCACACTCCCCCACCCACGTTGTATCGATGATGGTGCTT ATGTTGACACGAGTCTCTTCTCTTGCTCTTTTTTGGAACACAGTGTTCCG AGGACTGTACTGGTAGGTCGTGCATGATCCTGCGTCACCCCTTACCGCAC TCTCCCCCCCCCGTGCAGGCGAAACGGGCTCGCGAGGAGGCGGAGAGCGT CAACCTGAAGCGAAAGACTTCGCAGGAGGCGGCGGAGAGGACGTTGTGGA ACCTGGCGCGGAAACGATCAGAGGGTTTCGACAAGAACGTGCAGATTCAG CTGGCGTGTGAAGGGTTGAGGGCGGAAGTAAAGCGCTTCAAGGCTTTGGA GGCCGCGGCGAAACCACCACCAGCACGATGATGCTTGCAGGGGAAATCCA CTTCTGGGAGTGGAGGTTGTCTTGTGTGGCATGCCTTCGTGCCTGGCTTG TGACCACGGGCTGAGGTTCTGTGGGGAATTACCTGGGAAATAGCAACATG GGCGGGATAAGTGTCGTGCTTTTTCGGGGAGCAGAAAATGGTCCGCAACG GTGGTGTTGCGGCAACGGAATGTTGGCGTCTTGAGCGCGAGTGTGAGACT GCATGGTAGGAGTAGCCGAGTCCATAGTTAAGTATTTTGGATTTGCCCAT TGCAGATGCACCGTGCAAACCGAATACACGAGAGGAAGAAAAATGAGACT TTGGCGTCGGAGTGAGGGCAAGACGGCGGATTATCGTGCAGGGTGTGTTG CACGCAATGTTGGCGTGGAAGCGGGGGCAATCTGATCTGTTTCGTGTTTG GTGTGCAGTGATACAATGCACGTCACGTCAGTCGCGCCGGGCGTAAGAAG CCTTGGATGAGTGAGATGCTCCTGTGAGCAAGGATTGGACGATTCCTCGC GTGCTGCCAACACATGGCGCACGCTATATTGTAGGCAAGTCAGGCGGAGG TGCTTATTCTCCCGCTCACCTTGACCCAAGCCACTTGGTTCACACGTATT CAAAGGAGTGCTTTCAGCACGTTCCCTTGTGTTGGTTTTTCCCGTGACCA ACCGCGGAATATATCGTCTTCCACCATCCGGTACGACCCGTACCGTCGAA AGCAGACATCTTCGTCGCGGGGAGTTGAACCGTTTCGATTTTGCAGCAGC TTGAACGCAACAACTTGCTCTTGTAATTTAGGGAGCAACCCTCGCAAGCA CGAGCACTATATAGCTGGCGAAAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:155779..159502+

>mRNA_E-siliculosus-1a_M_contig96.17569.1 ID=mRNA_E-siliculosus-1a_M_contig96.17569.1|Name=mRNA_E-siliculosus-1a_M_contig96.17569.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1170bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:155779..159502+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGAAGGAGATCGTGCACTCCCTCATCGAGGAGGAGATGGCCGCCTTCGA
GCCCCCGGACTACCTCGCGGACAAGCCCTTGCCCACGACGCGGTTCAAGA
GCCCGCTGCTGAAGTCGGAGTGGGCTCGCGTCAGGGCGGAGAAGCCCTTG
GATCTCATGGACACTTCGCGGTACGACCTCCAGCCTCCACAGGGCGCCGC
TGCAGAGGACGAGGCGGCGTGGAAGCGGGCGTTGGACAACGCGCGAGCGC
AAACGGAGCACCAACACAATAGATGAAGGAGATCGTGCACTCCCTCATCG
AGGAGGAGATGGCCGCCTTCGAGCCCCCGGACTACCTCGCGGACAAGCCC
TTGCCCACGACGCGGTTCAAGAGCCCGCTGCTGAAGTCGGAGTGGGCTCG
CGTCAGGGCGGAGAAGCCCTTGGATCTCATGGACACTTCGCGGTACGACC
TCCAGCCTCCACAGGGCGCCGCTGCAGAGGACGAGGCGGCGTGGAAGCGG
GCGTTGGACAACGCGCGAGCGCAAACGGAGCACCAACACAATAGCAGATT
GCTAAACTTGGAGCTGCTGCAGAACTACGGCGCTAGCATGTGGCTGGGCC
ACAACAAGGCGGAGGAGGGGACGGAGGCAGCGGTGGCGTCGCAGCAGATT
GCTAAACTTGGAGCTGCTGCAGAACTACGGCGCTAGCATGTGGCTGGGCC
ACAACAAGGCGGAGGAGGGGACGGAGGCAGCGGTGGCGTCGCAGGCGAAA
CGGGCTCGCGAGGAGGCGGAGAGCGTCAACCTGAAGCGAAAGACTTCGCA
GGAGGCGGCGGAGAGGACGTTGTGGAACCTGGCGCGGAAACGATCAGAGG
GTTTCGACAAGAACGTGCAGATTCAGCTGGCGTGTGAAGGGTTGAGGGCG
GAAGTAAAGCGCTTCAAGGCTTTGGAGGCCGCGGCGAAACCACCACCAGC
ACGATGAGCGAAACGGGCTCGCGAGGAGGCGGAGAGCGTCAACCTGAAGC
GAAAGACTTCGCAGGAGGCGGCGGAGAGGACGTTGTGGAACCTGGCGCGG
AAACGATCAGAGGGTTTCGACAAGAACGTGCAGATTCAGCTGGCGTGTGA
AGGGTTGAGGGCGGAAGTAAAGCGCTTCAAGGCTTTGGAGGCCGCGGCGA
AACCACCACCAGCACGATGA
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