mRNA_E-siliculosus-1a_M_contig96.17567.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig96.17567.1
Unique NamemRNA_E-siliculosus-1a_M_contig96.17567.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig96.17567.1 vs. uniprot
Match: A0A6H5L3V4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3V4_9PHAE)

HSP 1 Score: 312 bits (800), Expect = 9.760e-101
Identity = 163/174 (93.68%), Postives = 167/174 (95.98%), Query Frame = 3 
Query:    9 ERASCRHARHRGPPRHLMSTSGNSPEDIDEVRQRLMASSNYNEMVGRIEGNSPFLEAGDKGSAKEGEESPILPVLRQTVRVVVDVAIGLVPVVLVVTYVKFPPPLLEALGSAATAIKGSPLEPVLEALPWEPAVVLKWAAQGGVAVLLSPVTDRLVVSPAIHQWVQAKLRSLSS 530
            E A CR ARH+GPPRHLMST+GNSPEDIDEVRQRLMASS Y+EMVGRIEGNSPFLEAGDKGSAKEGEESPILPVLRQTVRVVVDVA+GLVPVVLVVTY K PPPLLEALGSAATAIKGSPLEPVLEALPWEP VVLKWAAQGGVAVLLSPVTDRLVVSPAIHQWVQAKLRSLSS
Sbjct:   36 EHALCRQARHQGPPRHLMSTAGNSPEDIDEVRQRLMASSKYDEMVGRIEGNSPFLEAGDKGSAKEGEESPILPVLRQTVRVVVDVAVGLVPVVLVVTYAKLPPPLLEALGSAATAIKGSPLEPVLEALPWEPVVVLKWAAQGGVAVLLSPVTDRLVVSPAIHQWVQAKLRSLSS 209
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BLAST of mRNA_E-siliculosus-1a_M_contig96.17567.1 vs. uniprot
Match: D8LQA5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQA5_ECTSI)

HSP 1 Score: 289 bits (739), Expect = 2.320e-92
Identity = 153/157 (97.45%), Postives = 153/157 (97.45%), Query Frame = 3 
Query:   60 MSTSGNSPEDIDEVRQRLMASSNYNEMVGRIEGNSPFLEAGDKGSAKEGEESPILPVLRQTVRVVVDVAIGLVPVVLVVTYVKFPPPLLEALGSAATAIKGSPLEPVLEALPWEPAVVLKWAAQGGVAVLLSPVTDRLVVSPAIHQWVQAKLRSLSS 530
            MSTSGNSPEDIDEVRQRLMASSNYNEMVGRIEGNSPFLEAGDKGSAKEGEESPILPVLRQTVRVVVDVAI LVPVVLVVTY K PPPLLEALGSAAT IKGSPLEPVLEALPWEPAVVLKWAAQGGVAVLLSPVTDRLVVSPAIHQWVQAKLRSLSS
Sbjct:    1 MSTSGNSPEDIDEVRQRLMASSNYNEMVGRIEGNSPFLEAGDKGSAKEGEESPILPVLRQTVRVVVDVAITLVPVVLVVTYAKLPPPLLEALGSAATTIKGSPLEPVLEALPWEPAVVLKWAAQGGVAVLLSPVTDRLVVSPAIHQWVQAKLRSLSS 157
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig96.17567.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L3V4_9PHAE9.760e-10193.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQA5_ECTSI2.320e-9297.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig96contigE-siliculosus-1a_M_contig96:151799..153999 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size474
Model size1703
Exons2
Ec32 orthologEc-26_005530.1
Ec32 ortholog descriptionexpressed unknown protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig96.17567.1prot_E-siliculosus-1a_M_contig96.17567.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig96 152969..153940 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936529.6480634-UTR-E-siliculosus-1a_M_contig96:151798..1529681622936529.6480634-UTR-E-siliculosus-1a_M_contig96:151798..152968Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig96 151799..152968 -
1696251118.4796658-UTR-E-siliculosus-1a_M_contig96:151798..1529681696251118.4796658-UTR-E-siliculosus-1a_M_contig96:151798..152968Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig96 151799..152968 -
1622936529.7234695-UTR-E-siliculosus-1a_M_contig96:153940..1539991622936529.7234695-UTR-E-siliculosus-1a_M_contig96:153940..153999Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig96 153941..153999 -
1696251118.5064354-UTR-E-siliculosus-1a_M_contig96:153940..1539991696251118.5064354-UTR-E-siliculosus-1a_M_contig96:153940..153999Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig96 153941..153999 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936529.6652327-CDS-E-siliculosus-1a_M_contig96:152968..1531241622936529.6652327-CDS-E-siliculosus-1a_M_contig96:152968..153124Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 152969..153124 -
1696251118.4884818-CDS-E-siliculosus-1a_M_contig96:152968..1531241696251118.4884818-CDS-E-siliculosus-1a_M_contig96:152968..153124Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 152969..153124 -
1622936529.7093127-CDS-E-siliculosus-1a_M_contig96:153622..1539401622936529.7093127-CDS-E-siliculosus-1a_M_contig96:153622..153940Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 153623..153940 -
1696251118.4972067-CDS-E-siliculosus-1a_M_contig96:153622..1539401696251118.4972067-CDS-E-siliculosus-1a_M_contig96:153622..153940Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 153623..153940 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig96.17567.1

>prot_E-siliculosus-1a_M_contig96.17567.1 ID=prot_E-siliculosus-1a_M_contig96.17567.1|Name=mRNA_E-siliculosus-1a_M_contig96.17567.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=158bp
MSTSGNSPEDIDEVRQRLMASSNYNEMVGRIEGNSPFLEAGDKGSAKEGE
ESPILPVLRQTVRVVVDVAIGLVPVVLVVTYVKFPPPLLEALGSAATAIK
GSPLEPVLEALPWEPAVVLKWAAQGGVAVLLSPVTDRLVVSPAIHQWVQA
KLRSLSS*
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mRNA from alignment at E-siliculosus-1a_M_contig96:151799..153999-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig96.17567.1 ID=mRNA_E-siliculosus-1a_M_contig96.17567.1|Name=mRNA_E-siliculosus-1a_M_contig96.17567.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=2201bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:151799..153999- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CTCGACCTGAGCGCGCATCGTGCCGCCATGCCCGACACCGAGGCCCGCCT
CGCCATCTGATGTCCACCTCCGGCAACTCCCCGGAGGACATAGACGAGGT
GCGCCAGCGCCTCATGGCGTCGTCGAACTACAACGAGATGGTCGGTCGAA
TCGAGGGCAACAGCCCCTTCTTGGAGGCGGGAGACAAGGGCAGCGCGAAG
GAGGGGGAAGAGTCGCCGATCTTGCCGGTCTTGCGGCAGACCGTCCGGGT
CGTGGTGGACGTGGCCATCGGGCTTGTGCCGGTGGTGTTGGTCGTCACCT
ACGTCAAGTTTCCCCCGCCGTTGCTGGAGGCGTTGGGATCGGCGGCGACG
GCGATAAAGGGCTCGCCACTAGAACCGGTGAGCGCAAAGGAGGAAGACGA
CGACAGTTGGACCGCCTGCGCGAGAAATTTAGCTCTTGAGGAAATAGAAC
AGGGAGGGGGGATACGCAGACCGTATGTATCCCTGACCCAGCTTCCCTGG
TTGCATGCTTTATCCAACATATTTAGTTGATCGAAAAACCCTGTGAAGGC
CACTGAGATTCTTAGAAGCGAATATCAAACCATTAGCGTTATTATAATAG
TTCGGCTTCGAAAATACACGCCAGACAGATGATGGCACACCGGTTGCATG
AAGGCGATGCCTGGTGGCGGTGTGTCGCATGCTGCTCGTCCCGGAGCGCA
ACGAAGAAACATCAACCTTAGCTTGTGGCACCAAGCAATTTGAATGCACA
GCATCAGTTGGGGCGAACTCAACCCCTCCGAAGGTCGCATCCCGTTTACC
TCTTACAAGTCGGACAGGCCGGAGCTCCATTACATCGTACGCTCTTCCTC
GCCGTCTTTCTCCGATTGGTTACAGGTGCTCGAGGCCCTGCCCTGGGAAC
CGGCGGTGGTGCTTAAATGGGCGGCGCAGGGTGGGGTGGCGGTGCTGCTT
TCCCCGGTTACAGACAGGCTCGTGGTGTCCCCTGCGATACACCAGTGGGT
GCAGGCAAAACTTCGTTCTCTTTCTTCTTAGGCGTGCTTCTTCGTGGCCA
CCTCTTTTTGTGTCTTTCTGGGAAATAGCAGTCCTGATCAACTCGGCAAG
CTTGGTGCACAACAAACAGAGCGTAGATTAGAACGTTCGCACCTTTCCTC
CGCTAAAATCCATGCGTGCATATATCCTGTATTTAGTTTGGGGGGGAGGG
GGTGTGTGTGCGGGGCGTGTTCCCCTGTTCCCCGCTTCCTTTGATATTCA
AGTGCACGGCCGTGTTGTTGAGGCAAATGTAATTTTTTAGCAGGATCGGT
TGGACTTACGCCATGAGTTGCTGCAGATTATGCGTATTTTCGAGCGGGGG
GGCGTGGAACGCGCTCGGGCTCGATGGTCTTTTGCATTGATGGACGACCA
CGAAGCTGAGAGTCACTGCTTGCTCCTCTTGCGCCATCGCCTAGAACAGC
GTGCGTACAAAATGGTTTGAACAAGAAAAATAGGTGTGCATCGGCAAGCA
TCAATCAATTCCTTATTGGAGGACACGTGCGAACGGCTTCGAAGGCATGT
TCATCAGGGTTGTCTTGTGTGGATCTTAGCAGAAATGTGGTGTCTCGCTC
GCCACCACATGCCAGGACCAGTGGGAGCGACCGAATTACAACCGACGTCG
ACCACGCACGTTCGCTAAAATCCACCAAGGACCACTGTGGGACGATTAAA
ATAGCGGCACTGAATTAGATTTTACCTCCCCTCATTCCCCATTGAATCAT
TGAAGGAATTACCACCACGGGTCACATGTATACTGACTGGAAGGAAGAAA
CTTTCGCACCCTTGGTGATGGTACCACGAACGGTTCGTGATCCCTTTGTC
GAAGCCCGCCTGGCCTGCGCAGTATACACCAGGGTCCGAACCAAGTGTCG
AAGGGAAAATGCGGTAGTAGAACCACGTGTGGGTTAGACCGTAGATTTGC
ACGCCGAAAATGGTCCAGAACTCTCTACGGAGTATCTCTACGGAGTAGAC
GGCCCATGTGAGTTTTGGCAAGAAAAGACAGGAAGGCAGGAACCTGTGTT
GCCAAGTTTCACAGGGATGATGTGGCGTTGTGGGCGGGTGATCATTTCAC
GCGACGGACTCATTGTTTCAGCGAAGAAAGAGTCGAGGCTTCAGCAACAC
CGTTGCGCCCGATTTTGTTTTTCTTCATCCTCCTCGTGGTTGTCGCCGAA
A
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:151799..153999-

>mRNA_E-siliculosus-1a_M_contig96.17567.1 ID=mRNA_E-siliculosus-1a_M_contig96.17567.1|Name=mRNA_E-siliculosus-1a_M_contig96.17567.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=948bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:151799..153999- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTCCACCTCCGGCAACTCCCCGGAGGACATAGACGAGGTGCGCCAGCG
CCTCATGGCGTCGTCGAACTACAACGAGATGGTCGGTCGAATCGAGGGCA
ACAGCCCCTTCTTGGAGGCGGGAGACAAGGGCAGCGCGAAGGAGGGGGAA
GAGTCGCCGATCTTGCCGGTCTTGCGGCAGACCGTCCGGGTCGTGGTGGA
CGTGGCCATCGGGCTTGTGCCGGTGGTGTTGGTCGTCACCTACGTCAAGT
TTCCCCCGCCGTTGCTGGAGGCGTTGGGATCGGCGGCGACGGCGATAAAG
GGCTCGCCACTAGAACCGATGTCCACCTCCGGCAACTCCCCGGAGGACAT
AGACGAGGTGCGCCAGCGCCTCATGGCGTCGTCGAACTACAACGAGATGG
TCGGTCGAATCGAGGGCAACAGCCCCTTCTTGGAGGCGGGAGACAAGGGC
AGCGCGAAGGAGGGGGAAGAGTCGCCGATCTTGCCGGTCTTGCGGCAGAC
CGTCCGGGTCGTGGTGGACGTGGCCATCGGGCTTGTGCCGGTGGTGTTGG
TCGTCACCTACGTCAAGTTTCCCCCGCCGTTGCTGGAGGCGTTGGGATCG
GCGGCGACGGCGATAAAGGGCTCGCCACTAGAACCGGTGCTCGAGGCCCT
GCCCTGGGAACCGGCGGTGGTGCTTAAATGGGCGGCGCAGGGTGGGGTGG
CGGTGCTGCTTTCCCCGGTTACAGACAGGCTCGTGGTGTCCCCTGCGATA
CACCAGTGGGTGCAGGCAAAACTTCGTTCTCTTTCTTCTTAGGTGCTCGA
GGCCCTGCCCTGGGAACCGGCGGTGGTGCTTAAATGGGCGGCGCAGGGTG
GGGTGGCGGTGCTGCTTTCCCCGGTTACAGACAGGCTCGTGGTGTCCCCT
GCGATACACCAGTGGGTGCAGGCAAAACTTCGTTCTCTTTCTTCTTAG
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