mRNA_E-siliculosus-1a_M_contig96.17565.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig96.17565.1
Unique NamemRNA_E-siliculosus-1a_M_contig96.17565.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig96.17565.1 vs. uniprot
Match: A0A6H5LKJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LKJ8_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 4.880e-28
Identity = 77/103 (74.76%), Postives = 79/103 (76.70%), Query Frame = 1 
Query:    1 NAQFPPSNRPSGGILPLERAAAKPAXXXXXXXSVACLPADSALDAAAETAVGTDAXXXXXXGGVVALGVRMGGKAGELLERLKREREESLDFERKLTQALMDL 309
            NAQ P S   SGG+LP ERA     XXXXXXXS+AC P  SALDAAAETA GTDA      GG V LGVRMGGKA ELLERLKREREESLDFERKLTQALMDL
Sbjct:  700 NAQPPLSYGQSGGLLPPERAXXXXXXXXXXXXSLACWPVGSALDAAAETATGTDAGAAAASGGFVVLGVRMGGKAAELLERLKREREESLDFERKLTQALMDL 802
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig96.17565.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LKJ8_9PHAE4.880e-2874.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig96contigE-siliculosus-1a_M_contig96:146210..146521 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size312
Model size312
Exons1
Ec32 orthologEc-26_005510.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936529.4992025-CDS-E-siliculosus-1a_M_contig96:146209..1465211622936529.4992025-CDS-E-siliculosus-1a_M_contig96:146209..146521Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 146210..146521 -
1696251118.4481428-CDS-E-siliculosus-1a_M_contig96:146209..1465211696251118.4481428-CDS-E-siliculosus-1a_M_contig96:146209..146521Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 146210..146521 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig96.17565.1prot_E-siliculosus-1a_M_contig96.17565.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig96 146210..146521 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig96.17565.1

>prot_E-siliculosus-1a_M_contig96.17565.1 ID=prot_E-siliculosus-1a_M_contig96.17565.1|Name=mRNA_E-siliculosus-1a_M_contig96.17565.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=104bp
NAQFPPSNRPSGGILPLERAAAKPAAAAAGGGSVACLPADSALDAAAETA
VGTDAAAAAASGGVVALGVRMGGKAGELLERLKREREESLDFERKLTQAL
MDL*
back to top

mRNA from alignment at E-siliculosus-1a_M_contig96:146210..146521-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig96.17565.1 ID=mRNA_E-siliculosus-1a_M_contig96.17565.1|Name=mRNA_E-siliculosus-1a_M_contig96.17565.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=312bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:146210..146521- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
AACGCCCAATTCCCCCCCTCGAATAGACCGTCGGGTGGAATATTGCCGCT
AGAGAGAGCAGCTGCGAAGCCGGCAGCGGCGGCAGCTGGTGGAGGATCGG
TAGCGTGTTTGCCGGCAGATTCTGCGCTGGACGCAGCAGCAGAAACGGCG
GTAGGAACGGATGCAGCGGCGGCGGCGGCCTCGGGGGGAGTTGTTGCCCT
CGGGGTTCGAATGGGAGGAAAGGCCGGGGAGTTGCTGGAGAGGCTGAAGC
GAGAACGAGAGGAGTCGTTGGACTTCGAGAGGAAGCTCACGCAAGCGTTG
ATGGATCTTTGA
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:146210..146521-

>mRNA_E-siliculosus-1a_M_contig96.17565.1 ID=mRNA_E-siliculosus-1a_M_contig96.17565.1|Name=mRNA_E-siliculosus-1a_M_contig96.17565.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=624bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:146210..146521- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
AACGCCCAATTCCCCCCCTCGAATAGACCGTCGGGTGGAATATTGCCGCT
AGAGAGAGCAGCTGCGAAGCCGGCAGCGGCGGCAGCTGGTGGAGGATCGG
TAGCGTGTTTGCCGGCAGATTCTGCGCTGGACGCAGCAGCAGAAACGGCG
GTAGGAACGGATGCAGCGGCGGCGGCGGCCTCGGGGGGAGTTGTTGCCCT
CGGGGTTCGAATGGGAGGAAAGGCCGGGGAGTTGCTGGAGAGGCTGAAGC
GAGAACGAGAGGAGTCGTTGGACTTCGAGAGGAAGCTCACGCAAGCGTTG
ATGGATCTTTGAAACGCCCAATTCCCCCCCTCGAATAGACCGTCGGGTGG
AATATTGCCGCTAGAGAGAGCAGCTGCGAAGCCGGCAGCGGCGGCAGCTG
GTGGAGGATCGGTAGCGTGTTTGCCGGCAGATTCTGCGCTGGACGCAGCA
GCAGAAACGGCGGTAGGAACGGATGCAGCGGCGGCGGCGGCCTCGGGGGG
AGTTGTTGCCCTCGGGGTTCGAATGGGAGGAAAGGCCGGGGAGTTGCTGG
AGAGGCTGAAGCGAGAACGAGAGGAGTCGTTGGACTTCGAGAGGAAGCTC
ACGCAAGCGTTGATGGATCTTTGA
back to top