mRNA_E-siliculosus-1a_M_contig96.17563.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig96.17563.1
Unique NamemRNA_E-siliculosus-1a_M_contig96.17563.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig96.17563.1 vs. uniprot
Match: D8LQA8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQA8_ECTSI)

HSP 1 Score: 245 bits (625), Expect = 4.110e-82
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1 
Query:    1 MPHTAGQGLARHRLPGDTRGGEEEEEAGSDHDARESSERYFSARWMLERERAREESDDCSQAFAIIPVVGVCLMVLYVVWLDQASQGLLVWLAGGSPLAELVPFKMLGEMVGGGDEMAIPGAYA 372
            MPHTAGQGLARHRLPGDTRGGEEEEEAGSDHDARESSERYFSARWMLERERAREESDDCSQAFAIIPVVGVCLMVLYVVWLDQASQGLLVWLAGGSPLAELVPFKMLGEMVGGGDEMAIPGAYA
Sbjct:    1 MPHTAGQGLARHRLPGDTRGGEEEEEAGSDHDARESSERYFSARWMLERERAREESDDCSQAFAIIPVVGVCLMVLYVVWLDQASQGLLVWLAGGSPLAELVPFKMLGEMVGGGDEMAIPGAYA 124
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig96.17563.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQA8_ECTSI4.110e-82100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig96contigE-siliculosus-1a_M_contig96:138514..141639 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size375
Model size375
Exons2
Ec32 orthologEc-26_005490.1
Ec32 ortholog descriptionexpressed unknown protein
Hectar predicted targeting categorysignal anchor
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936529.2627795-CDS-E-siliculosus-1a_M_contig96:138513..1386831622936529.2627795-CDS-E-siliculosus-1a_M_contig96:138513..138683Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 138514..138683 -
1696251118.36771-CDS-E-siliculosus-1a_M_contig96:138513..1386831696251118.36771-CDS-E-siliculosus-1a_M_contig96:138513..138683Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 138514..138683 -
1622936529.2799377-CDS-E-siliculosus-1a_M_contig96:141434..1416391622936529.2799377-CDS-E-siliculosus-1a_M_contig96:141434..141639Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 141435..141639 -
1696251118.3788667-CDS-E-siliculosus-1a_M_contig96:141434..1416391696251118.3788667-CDS-E-siliculosus-1a_M_contig96:141434..141639Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 141435..141639 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig96.17563.1prot_E-siliculosus-1a_M_contig96.17563.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig96 138514..141639 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig96.17563.1

>prot_E-siliculosus-1a_M_contig96.17563.1 ID=prot_E-siliculosus-1a_M_contig96.17563.1|Name=mRNA_E-siliculosus-1a_M_contig96.17563.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=125bp
MPHTAGQGLARHRLPGDTRGGEEEEEAGSDHDARESSERYFSARWMLERE
RAREESDDCSQAFAIIPVVGVCLMVLYVVWLDQASQGLLVWLAGGSPLAE
LVPFKMLGEMVGGGDEMAIPGAYA*
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mRNA from alignment at E-siliculosus-1a_M_contig96:138514..141639-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig96.17563.1 ID=mRNA_E-siliculosus-1a_M_contig96.17563.1|Name=mRNA_E-siliculosus-1a_M_contig96.17563.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3126bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:138514..141639- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCCTCACACAGCAGGACAAGGATTGGCGCGGCATCGCTTGCCAGGGGA
CACGAGGGGGGGGGAGGAGGAGGAGGAAGCGGGAAGCGACCACGACGCGA
GAGAGTCGTCGGAGCGGTACTTCTCCGCGAGGTGGATGCTGGAGAGGGAG
CGGGCACGAGAAGAGTCGGACGACTGCTCGCAAGCTTTCGCGATCATCCC
CGTGGGTAAGTCGCAGGGGCCTCCCGTCCGTCTCAGCTCTCTCTCTCGCT
CTCGCTCTCTCTCTCTCTCCGGCAGCGGAAAGCAGCAAATCGTGTTGTTT
GCTCGCGTGGCTCGTTCGGTCACATTTTTGTGTCGATTGGCGTCTTTGCG
TCACATGACGCAACCGCTTGCTTCTACCCTCGCAGCAGGTGAACAGAGTA
GAACAGCATTACTTCGGAACATCCACCGAGGAATGAATGAAACGTTTGGC
AGACAAACATAGCAGCAATGGGCTAAACGTCGATACCGCGTGCGCTAGGG
TGGTCAAAACTCGGCAATCACGATATCCGATGTTGAGCTGGTTGTTGTTT
GTTTGCACTCGCCGCGTCGCGCTCGGATACAAAATGTCGGAAGAGCAGCT
GCTACACCCTACACCCATGGCGGTCGCTGCCAGTGACGAAAAGAGAAAAG
AGCGGATGGTCTACTCAAGGTTTGCTGCTTGTAAAAGCTCTGCTTGATGA
TCTACGGTAACCTGGCCGCTGTTGACCTATGACAGGGTGTTGGAAGGGGG
GGTTCTTCAACCTTCTGCCCGTTGCGAACAGCAGGCAGCAGACAGACGCT
CTTTCGTACCGCCGGGGCATCCCCTGCGTCCCTGAGAGCTTCCACACACC
CAATTATTTGTCATTTTTTTTCGAGAGAGAAGGCGTACTTCACAACATCT
TTGTTTTTCCAAGTCACGGCAGAGCTGTATCAGCCTCGCCTCGCATCAAG
TTTTTCATCAAGACCCATTATGCATTAACGCACTACATGTACACATACGA
GAACCTGGAAAACTCCGAAGTGGTCCGAGTTTTGCCGTGGATCGTAGTCG
GAAATAAATGGACACTCTTTTAGTCTAGTAATAACGTGGTGCACGAGCCG
GCCCCTCTTCGTGCGTGCGTGCTGCGGCCGAGACCCACATGTTGTTGTCG
TGTGTTTATATACGCGATCTCTCGCGCGATTTTCTACTATCAACACCAAC
CACGTGCCCTCGTCAGACAATGGGAGAACGATGGAGCACCCCTTCGAGAC
GAGAAGCTCGTTCGATTCGCCACACTACAATATCGTATCCCCCGCTGTCT
TTCCAAGACTGCTTTTGCGAGGATGCATCAAAGAAGAAACCCGATTCAAA
TGGCAGCGCCTGCGACACGTTTTTGGGTCCTCTGCTGGTGGAACTACGGT
GTAGTGTTGTGATGAGTTCGCGTACTCGAGGTGGTATTCGATGGGTGGGA
CGCCGGAGAACCACGAACTGGTGACAAACGTCATAAATTTGCGAGGGCGT
ATTCAACCTATTACTGTAACTAAGGATGCATGGCTACCATGATTGTAGCT
TAGAGATATGGGTTTCGGGTTTCGTATCCCTAACCCTAACCCTATCTAAC
TCTAACCCCCACCCCGTACCCCCCTACTGAAACCAAGATTAAATATCCTC
GCGAACAGGCTACTGCTGTTCACACACAAGTCGCCCAAGCTCTATTGCCC
CGTGTACACCCTGGGCATGAAACATGAAAAACGGCCCGGCGTAGCATGTA
GCCCCCTGTAGGTAACCGACTTGACAGGACAAACTGGCGGCGATCTCAAT
ATTGGAATTACGTCTGTTGTGCTACAAGTAAACTGGAGTAAAGCTGACGA
TCCCGACAAGGACGACGTGGTGTTGTTGTTGCCAGCGTTACCCCATGGTT
TGAGACGAGAGAAACGTGCTGACCCCCAGCAACTGCTCTTGTGTATGTAC
CCTCACGGCAAACGGGCAAATTTCTGAAGTCGCGAGGTTTCACCAACATG
AAATATACGTAGCCCCAAGAAAAGCCCAACAAGGGAGCGAGGCCCACCTC
TTGAACTCGGAAAGTTAAATAGAGTACCAGTGCGTTAGCATTACAATCAG
AAGTAAGACCAAAGCTGCGTTTGCTGTTACAGTAGTTGGAGGTAGCTATG
TGTGTGATGGTGCGTTGCCATGTTGCCATGGATATGTGGCGAATCAGAAG
TTATGTTCTTACGTCATGGCAAGATTCAAGAATTGTTCCGAGTCATGCAC
CCTTTCTGCTCGCGTGTTGCGCTTGGGTCTAGTTTGTGTTGGGTTCCGAC
TGCATGGTAAACGTGCAAGGCAATAAAAAAACATTGTCAAGGAGAACAGA
GGAAAGCAGCAACATGCTGCAGATGTGGTCGGACTACCGTAGTTCCACAC
AGTGATTACACAGGTGCAGATCGCATTATTAGCACTCCTTACGATTACGT
CGTGGTTCATAAACCGTATTAACGGCCAGTAGTTTGCGGTAGTATACTCT
TTGTGTGAAACCCCGGTCTCCCCGCCCATGCACACAACTAGCTACCTGCA
CGTGCAGGGTAGGCATTCGCCAGTGTGCATTTTCCGTAGAATTGTAAGCA
GATCATTGGCGTACATAGCTACACATTGCGTGTTCCGATGCAATGCGTGT
ATTGAACGACACTGGGTGTTACGCCACACAGGGGTCAGACACGCAAGACA
GGTCGTTCATGGGCAGGGAGACAACAAGATGAAGTTGTTTTTGAATAGGT
ATTCGGGGCTCTTGGTGCGAATCAAGCTGTAAGAGTATCCTTCCGTGGCA
GCAGTCCAATCCTCCAAACGCATATGCGGCAGCCACCAACCACCCGGCCC
CGCTGCTCTCCGACGCCCTCCAACACGCCTTGCATCCCACGTTTCGCACC
CCCTTGTTTCTCTTCCCCGCGGCGGCCGATGCTTCTGGTTGGCCCAACAA
AACCAGTCGGGGTGTGCCTGATGGTCCTGTACGTGGTATGGCTGGACCAG
GCGTCGCAAGGGCTACTCGTTTGGTTGGCCGGGGGATCGCCGCTGGCGGA
GCTCGTTCCTTTCAAGATGCTTGGCGAGATGGTCGGCGGGGGCGATGAAA
TGGCGATTCCTGGGGCGTACGCATGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:138514..141639-

>mRNA_E-siliculosus-1a_M_contig96.17563.1 ID=mRNA_E-siliculosus-1a_M_contig96.17563.1|Name=mRNA_E-siliculosus-1a_M_contig96.17563.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=750bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:138514..141639- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCCTCACACAGCAGGACAAGGATTGGCGCGGCATCGCTTGCCAGGGGA
CACGAGGGGGGGGGAGGAGGAGGAGGAAGCGGGAAGCGACCACGACGCGA
GAGAGTCGTCGGAGCGGTACTTCTCCGCGAGGTGGATGCTGGAGAGGGAG
CGGGCACGAGAAGAGTCGGACGACTGCTCGCAAGCTTTCGCGATCATCCC
CGTGGATGCCTCACACAGCAGGACAAGGATTGGCGCGGCATCGCTTGCCA
GGGGACACGAGGGGGGGGGAGGAGGAGGAGGAAGCGGGAAGCGACCACGA
CGCGAGAGAGTCGTCGGAGCGGTACTTCTCCGCGAGGTGGATGCTGGAGA
GGGAGCGGGCACGAGAAGAGTCGGACGACTGCTCGCAAGCTTTCGCGATC
ATCCCCGTGGTCGGGGTGTGCCTGATGGTCCTGTACGTGGTATGGCTGGA
CCAGGCGTCGCAAGGGCTACTCGTTTGGTTGGCCGGGGGATCGCCGCTGG
CGGAGCTCGTTCCTTTCAAGATGCTTGGCGAGATGGTCGGCGGGGGCGAT
GAAATGGCGATTCCTGGGGCGTACGCATGATCGGGGTGTGCCTGATGGTC
CTGTACGTGGTATGGCTGGACCAGGCGTCGCAAGGGCTACTCGTTTGGTT
GGCCGGGGGATCGCCGCTGGCGGAGCTCGTTCCTTTCAAGATGCTTGGCG
AGATGGTCGGCGGGGGCGATGAAATGGCGATTCCTGGGGCGTACGCATGA
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