mRNA_E-siliculosus-1a_M_contig96.17556.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig96.17556.1
Unique NamemRNA_E-siliculosus-1a_M_contig96.17556.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig96.17556.1 vs. uniprot
Match: A0A6H5JKU4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKU4_9PHAE)

HSP 1 Score: 471 bits (1212), Expect = 1.940e-158
Identity = 336/389 (86.38%), Postives = 344/389 (88.43%), Query Frame = 3 
Query:    3 RLHRCFATGVYMAAQSFFYRGAAFRGLGSGSCSNGLRAGRLAGRVNHXXXXXLHLLANPTATSAHRRISSNMMIGSGSSRPPASAADPRGRIHELATSSXXXXXXXXXXXXXXXXXXXXXRSEDEKDGRQAGKARGDGSPLRGGGAGGHGAPV------RVKKRESAGEDGDARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPQLPLFGLDIPEDRVHVVDTPEGVRDAAAVLSRSVLMSIDTETQPSFAVGEWHPTSLLQVATRDADGEEDVLVIDLLSLKDGLLLPESLSEALSGPFGSPNVVKLAG-----VGLANDLDEMSFAFENTPFLQQVPGVLNLNALNIKLTGGACDDQGTPRDLGLRKLASM 1136
            RL+RC  TGVYMAAQSFF RGA+FRGLGSGSCSNGLRAGRLAGRVNH     LH+LANPTATSA  RISSNMMIGS  SRPPASAADPR  IHELATSSXXXXXXXXXXXXXXXXXXXXX  EDEKD RQAGKA GDGSP RGG  G H          RVKKRESAGEDGD RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPQLPLFGLDIPEDRVHVVDTPEGVRDAAAVL RSVLMS+DTETQPSFAVGEWHPTSLLQVATRDA+GEEDVLVIDLLSLKDGL LPESLSEALSGPFGSP+VVKL G     VGLANDLDEMSFAF+ TPFL+QVPGVLNLNALN KLTGG CDDQG PRDLGLRKLASM
Sbjct:    2 RLNRCLVTGVYMAAQSFFSRGASFRGLGSGSCSNGLRAGRLAGRVNHRHRH-LHVLANPTATSADTRISSNMMIGS--SRPPASAADPRCPIHELATSSXXXXXXXXXXXXXXXXXXXXXXXEDEKDRRQAGKAGGDGSPPRGGRLGSHXXXXXXXXXGRVKKRESAGEDGDGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPQLPLFGLDIPEDRVHVVDTPEGVRDAAAVLGRSVLMSVDTETQPSFAVGEWHPTSLLQVATRDANGEEDVLVIDLLSLKDGLFLPESLSEALSGPFGSPSVVKLGGPLHVGVGLANDLDEMSFAFDKTPFLEQVPGVLNLNALNTKLTGGVCDDQGIPRDLGLRKLASM 387
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig96.17556.1 vs. uniprot
Match: D8LQB4_ECTSI (3\'-5\' exonuclease family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQB4_ECTSI)

HSP 1 Score: 357 bits (916), Expect = 6.770e-117
Identity = 185/193 (95.85%), Postives = 187/193 (96.89%), Query Frame = 3 
Query:  750 MSIDTETQPSFAVGEWHPTSLLQVATRDADGEEDVLVIDLLSLKDGLLLPESLSEALSGPFGSPNVVKLAGVGLANDLDEMSFAFENTPFLQQVPGVLNLNALNIKLTGGACDDQGTPRDLGLRKLASMYLGRSLSKRQQMSRWARRPLQSAQVNYAACDALVALRVLDALLLALGSLDVRELCTTWTPRRYS 1328
            MSIDTETQPSFAVGEWHPTSLLQVATRDADGEEDVLVIDLLSLKDGLLLPESLSEALSGPFGSPNVVKL GVGLANDLDEMSFAFE TPFL+QVPGVLNLNALN KLTGGAC+DQG PRDLGLRKLASMYLGRSLSKRQQMSRWARRPLQSAQVNYAACDALVALRV DALLLALGSLDV ELCTTWTPRRYS
Sbjct:    1 MSIDTETQPSFAVGEWHPTSLLQVATRDADGEEDVLVIDLLSLKDGLLLPESLSEALSGPFGSPNVVKL-GVGLANDLDEMSFAFEETPFLEQVPGVLNLNALNTKLTGGACNDQGIPRDLGLRKLASMYLGRSLSKRQQMSRWARRPLQSAQVNYAACDALVALRVFDALLLALGSLDVGELCTTWTPRRYS 192
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig96.17556.1 vs. uniprot
Match: A0A835ZAR5_9STRA (Ribonuclease H-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAR5_9STRA)

HSP 1 Score: 142 bits (357), Expect = 5.460e-34
Identity = 90/205 (43.90%), Postives = 129/205 (62.93%), Query Frame = 3 
Query:  663 LDIPEDRVHVVDTPEGVRDAAAVLSRSVLMSIDTETQPSFAV-GEWHPTSLLQVATRDADGEEDVLVIDLLSLKDGLLLPESLSEALSGPFGSPNVVKLAGVGLANDLDEMSFAFENTPFLQQVPGVLNLNALNIKLTGGACDDQGTPRDLGLRKLASMYLGRSLSKRQQMSRWARRPLQSAQVNYAACDALVALRVLDALLLAL 1274
            LDIP D+V +VDTP  ++ A +VL  S ++++DTETQP+F      H T+LLQ+A+R ADG E V +IDLL+L    L  E++  AL   F S +++K+ G GL  D+ E+   +      +++ GVL  NA++ +L      D      L L+KL   YL  SLSK QQMS WA RPL S+Q++YAACDALV LR+ D+++L +
Sbjct:   58 LDIPSDKVTMVDTPAALQWAGSVLRDSSIIALDTETQPNFTPRSPPHRTALLQIASRAADGTEAVFLIDLLALLP--LCAEAMDSALYHCFRSEDILKV-GHGLVQDVRELYMFYPQVAAFRRMNGVLEANAMHKQL------DPEVVNMLSLKKLVLHYLNCSLSKGQQMSNWANRPLSSSQIHYAACDALVLLRLHDSMVLEI 253
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig96.17556.1 vs. uniprot
Match: A0A2D4BG54_PYTIN (3'-5' exonuclease domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BG54_PYTIN)

HSP 1 Score: 122 bits (307), Expect = 4.750e-27
Identity = 78/210 (37.14%), Postives = 119/210 (56.67%), Query Frame = 3 
Query:  639 VPQLPLFGLDIPEDRVHVVDTPEGVRDAAAVLSRSVLMSIDTETQPSFA-VGEWHPTSLLQVATRDADGEEDVLVIDLLSLKDGLLLPESLSEALSGPFGSPNVVKLAGVGLANDLDEMSFAFENTPFLQQVPGVLNLNALNIKLTGGACDDQGTPRDLGLRKLASMYLGRSLSKRQQMSRWARRPLQSAQVNYAACDALVALRVLDALL 1265
            + Q P++ ++ PE+ V  VD  E +   +     + ++ IDTET+P F      H  SLLQ+A R  D +E+V ++DLL LK     P   ++ L G F S +V+KL G  L  DL E++ ++      +    V+ +N ++I L        G  + L L+KL  +YLG+ L+K QQMS W RRPL ++Q++YAACDALV + + D LL
Sbjct:   13 IQQAPMYTIERPEELVKFVDDKETMHYFSERARLATIVGIDTETRPQFRDKHRSHRCSLLQIALRLRDTKEEVFILDLLKLK-----PHMYNKTLLGLFLSQSVIKL-GQSLLGDLKELASSYPGASCFRVAKAVVEVNDMSISL-------MGAHQALSLQKLVFLYLGKRLTKTQQMSNWNRRPLTTSQIHYAACDALVLIHLYDVLL 209
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig96.17556.1 vs. uniprot
Match: A0A6H5JNJ5_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNJ5_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 1.940e-26
Identity = 60/64 (93.75%), Postives = 62/64 (96.88%), Query Frame = 3 
Query: 1137 YLGRSLSKRQQMSRWARRPLQSAQVNYAACDALVALRVLDALLLALGSLDVRELCTTWTPRRYS 1328
            YLGRSLSKRQQMSRWARRPLQSAQVNYAACDALVALRV DALLLA+GS+DVRELCTTWTPR YS
Sbjct:  199 YLGRSLSKRQQMSRWARRPLQSAQVNYAACDALVALRVFDALLLAMGSVDVRELCTTWTPRSYS 262
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig96.17556.1 vs. uniprot
Match: A0A482SJB0_9ARCH (3'-5' exonuclease domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SJB0_9ARCH)

HSP 1 Score: 106 bits (265), Expect = 9.290e-22
Identity = 74/209 (35.41%), Postives = 109/209 (52.15%), Query Frame = 3 
Query:  657 FGLDIPEDRVHVVDTPEGVRDAAAVLSRSVLMSIDTETQPSFAVGEW-------HPTSLLQVATRDADGEEDVLVIDLLSLKDGLLLPESLSEALSGPFGSPNVVKLAGVGLANDLDEMSFAFENTPFLQQVPGVLNLNALNIKLTGGACDDQGTPRDLGLRKLASMYLGRSLSKRQQMSRWARRPLQSAQVNYAACDALVALRVLDAL 1262
            F  D+P+  +H V+  E ++      +  V++ IDTET+P F            +PTSL+Q+A R + G E V ++D+L+LK   LL E L   L       + +K+ G  L ND  E+  ++ +    Q+V  +L+   L+  L     +       L L+ L   YL   L K QQMS W+RRPL  AQ+ YAACDALV LR+ DA+
Sbjct:   14 FTFDLPQSSLHFVNDVESLQRLRIAFADCVIVGIDTETRPMFVKRNRANQFVRPNPTSLVQMALRSSSGLESVHIVDMLTLKTQGLLNE-LDMVLVTVMCDDHCIKV-GQSLINDFKELRMSYAHMQSFQKVHAILDTTVLSKVLQPELINT------LSLKTLVKQYLHFQLVKGQQMSDWSRRPLGKAQIQYAACDALVLLRLYDAM 214
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig96.17556.1 vs. uniprot
Match: A0A024TW10_9STRA (3'-5' exonuclease domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TW10_9STRA)

HSP 1 Score: 108 bits (269), Expect = 2.980e-21
Identity = 74/192 (38.54%), Postives = 105/192 (54.69%), Query Frame = 3 
Query:  684 VHVVDTPEGVRDAAAVLSRSVLMSIDTETQPSFA-VGEWHPTSLLQVATRDADGEEDVLVIDLLSLKDGLLLPESLSEALSGPFGSPNVVKLAGVGLANDLDEMSFAFENTPFLQQVPGVLNLNALNIKLTGGACDDQGTPRDLGLRKLASMYLGRSLSKRQQMSRWARRPLQSAQVNYAACDALVALRVLD 1256
            V  + TP  +      L  +V++ +DTET+P F      +PTSLLQVA RDA G EDV + DLL+L      P   ++ L+  F +P+++KL G GL NDL E++ A+       ++ GV+ +NAL  ++ G       T   + L+KL    L R L K  Q S W RRPL   Q+ YAA DALV + + D
Sbjct:   56 VQFLHTPSQLAACHERLRTAVVVGLDTETKPEFKKTAIPNPTSLLQVAVRDAHGAEDVFLFDLLALT-----PSHYNDMLAELFLNPSILKL-GQGLLNDLKELAHAYPTATCFTKMHGVVEVNALFREIEGP------TQPMMSLQKLVYYSLKRKLVKTHQKSNWNRRPLAPGQITYAALDALVLVWIFD 235
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig96.17556.1 vs. uniprot
Match: A0A418BAW1_9STRA (T-complex protein 1 subunit gamma n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418BAW1_9STRA)

HSP 1 Score: 107 bits (268), Expect = 2.030e-20
Identity = 73/192 (38.02%), Postives = 105/192 (54.69%), Query Frame = 3 
Query:  684 VHVVDTPEGVRDAAAVLSRSVLMSIDTETQPSFA-VGEWHPTSLLQVATRDADGEEDVLVIDLLSLKDGLLLPESLSEALSGPFGSPNVVKLAGVGLANDLDEMSFAFENTPFLQQVPGVLNLNALNIKLTGGACDDQGTPRDLGLRKLASMYLGRSLSKRQQMSRWARRPLQSAQVNYAACDALVALRVLD 1256
            V  + TP  +      L  ++++ +DTET+P F      +PTSLLQVA RDA G EDV + DLL+L      P   ++ L+  F +P+++KL G GL NDL E++ A+       ++ GV+ +NAL  ++ G       T   + L+KL    L R L K  Q S W RRPL   Q+ YAA DALV + + D
Sbjct:   19 VQFLHTPSQLAACHERLRTAIVVGLDTETKPEFKKTAIPNPTSLLQVAVRDAHGAEDVFLFDLLALT-----PSHYNDMLAELFLNPSILKL-GQGLLNDLKELAHAYPTATCFTKMHGVVEVNALFREIEGP------TQPMMSLQKLVYYSLKRKLVKTHQKSNWNRRPLAPGQITYAALDALVLVWIFD 198
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig96.17556.1 vs. uniprot
Match: W2R8I8_PHYPN (3'-5' exonuclease domain-containing protein n=8 Tax=Phytophthora TaxID=4783 RepID=W2R8I8_PHYPN)

HSP 1 Score: 104 bits (259), Expect = 4.450e-20
Identity = 73/211 (34.60%), Postives = 115/211 (54.50%), Query Frame = 3 
Query:  645 QLPLFGLDIPEDRVHVVDTPEGVRDAAAVLSRSVLMSIDTETQPSFAVGEW-HPTSLLQVATRDADGEEDVLVIDLLSLKDGLLLPESLSEALSGPFGSPNVVKLAGVGLANDLDEMSFAFENTPFLQQVPGVLNLNALNIKLTGGACDDQGTPRDLGLRKLASMYLGRSLSKRQQMSRWARRPLQSAQVNYAACDALVALRVLDALLLAL 1274
            Q P + +D     ++ V + +     A  L ++ ++  DTET+P ++  +  +P++LLQ+A RDA  +E+V ++DLL L       +  +  L   F S  +VKL G    +DL E++ ++          GV+ +N L+I L G           L L+KL   YL R L+K QQMS WARRPL S+Q++YAA DALV + + D LL+ +
Sbjct:   26 QSPQYVIDQSRVPIYFVASKKEWSYCATRLLKAEVIGFDTETRPIWSKHQRPNPSALLQIAVRDASHKEEVFILDLLHLS-----AKVYNTTLKRVFLSKTIVKL-GQSFYHDLQELAQSYPQASCFTVCKGVVEVNDLSISLAG-------PHNPLSLQKLVFFYLHRKLTKTQQMSNWARRPLTSSQLHYAAADALVLIHLYDELLMRM 223
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig96.17556.1 vs. uniprot
Match: A0A7S2GX10_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GX10_9STRA)

HSP 1 Score: 100 bits (250), Expect = 6.550e-20
Identity = 84/242 (34.71%), Postives = 118/242 (48.76%), Query Frame = 3 
Query:  657 FGLDIPEDRVHVVDTPEGVRDAAAVLSRSVLMSIDTETQPSF---------------AVGEW-----------------HPTSLLQVATRDADGEEDVLVIDLLSLKDGLLLPESLSEALSGPFGSPNVVKLAGVGLANDLDEMSFAFENTPFLQQVPGVLNLNALNIKLTGGACDDQGTPRDLGLRKLASMYLGRSLSKRQQMSRWARRPLQSAQVNYAACDALVALRVLDALLLALGSLD 1286
            F LDIP+DR+  V   +G+  A  +L  + ++ IDTETQP+F               + GE                  +P +LLQ+A RDA G E VL+ D L L  G      LS  L   F S  V+KL G GL  DL E+  ++    F + +  VL ++ L+  +  G   DQ       L+ +   +L  +L+K+QQ S W  RPL   Q+ YAACDALV LR+ DA+   +G  D
Sbjct:   22 FVLDIPDDRLIYVQNGDGIIQAEEILRTATIIGIDTETQPTFYKYGARNARRKSEGSSAGEKGGEKTSRSPGKKQKFPRNPCALLQIAVRDAAGLETVLLFDTLRLLPGF--ETELSTILGRVFRSHEVLKL-GHGLKQDLFELHASYPLKGF-KALENVLEVDDLSKVVWPG---DQMR----SLQVMVLRFLDSALNKKQQCSNWGHRPLSLKQMEYAACDALVLLRLYDAIRAEIGDRD 252
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig96.17556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JKU4_9PHAE1.940e-15886.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQB4_ECTSI6.770e-11795.853\'-5\' exonuclease family protein n=1 Tax=Ectocar... [more]
A0A835ZAR5_9STRA5.460e-3443.90Ribonuclease H-like domain-containing protein (Fra... [more]
A0A2D4BG54_PYTIN4.750e-2737.143'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5JNJ5_9PHAE1.940e-2693.753'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A482SJB0_9ARCH9.290e-2235.413'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A024TW10_9STRA2.980e-2138.543'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A418BAW1_9STRA2.030e-2038.02T-complex protein 1 subunit gamma n=1 Tax=Aphanomy... [more]
W2R8I8_PHYPN4.450e-2034.603'-5' exonuclease domain-containing protein n=8 Ta... [more]
A0A7S2GX10_9STRA6.550e-2034.71Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig96contigE-siliculosus-1a_M_contig96:89388..94390 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1401
Model size2072
Exons6
Ec32 orthologEc-26_005430.1
Ec32 ortholog descriptionRibonuclease H-like domain
Hectar predicted targeting categorymitochondrion
Seed ortholog score360.1
Taxonomic scopeEukaryota
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGsKOG2207@1,KOG2207@2759
EggNOG free text desc.3'-5'-exoribonuclease activity involved in mature miRNA 3'-end processing
Seed eggNOG ortholog2880.D8LQB4
Seed ortholog evalue1.5e-96
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig96.17556.1prot_E-siliculosus-1a_M_contig96.17556.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig96 90024..94355 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936528.0667274-UTR-E-siliculosus-1a_M_contig96:89387..900231622936528.0667274-UTR-E-siliculosus-1a_M_contig96:89387..90023Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig96 89388..90023 -
1696251117.686036-UTR-E-siliculosus-1a_M_contig96:89387..900231696251117.686036-UTR-E-siliculosus-1a_M_contig96:89387..90023Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig96 89388..90023 -
1622936528.1874137-UTR-E-siliculosus-1a_M_contig96:94355..943901622936528.1874137-UTR-E-siliculosus-1a_M_contig96:94355..94390Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig96 94356..94390 -
1696251117.7693167-UTR-E-siliculosus-1a_M_contig96:94355..943901696251117.7693167-UTR-E-siliculosus-1a_M_contig96:94355..94390Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig96 94356..94390 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936528.0865357-CDS-E-siliculosus-1a_M_contig96:90023..901321622936528.0865357-CDS-E-siliculosus-1a_M_contig96:90023..90132Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 90024..90132 -
1696251117.7007084-CDS-E-siliculosus-1a_M_contig96:90023..901321696251117.7007084-CDS-E-siliculosus-1a_M_contig96:90023..90132Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 90024..90132 -
1622936528.1039298-CDS-E-siliculosus-1a_M_contig96:90755..908461622936528.1039298-CDS-E-siliculosus-1a_M_contig96:90755..90846Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 90756..90846 -
1696251117.7102222-CDS-E-siliculosus-1a_M_contig96:90755..908461696251117.7102222-CDS-E-siliculosus-1a_M_contig96:90755..90846Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 90756..90846 -
1622936528.1167638-CDS-E-siliculosus-1a_M_contig96:91414..915151622936528.1167638-CDS-E-siliculosus-1a_M_contig96:91414..91515Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 91415..91515 -
1696251117.7196958-CDS-E-siliculosus-1a_M_contig96:91414..915151696251117.7196958-CDS-E-siliculosus-1a_M_contig96:91414..91515Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 91415..91515 -
1622936528.1311722-CDS-E-siliculosus-1a_M_contig96:92469..926471622936528.1311722-CDS-E-siliculosus-1a_M_contig96:92469..92647Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 92470..92647 -
1696251117.7371545-CDS-E-siliculosus-1a_M_contig96:92469..926471696251117.7371545-CDS-E-siliculosus-1a_M_contig96:92469..92647Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 92470..92647 -
1622936528.150046-CDS-E-siliculosus-1a_M_contig96:92900..937781622936528.150046-CDS-E-siliculosus-1a_M_contig96:92900..93778Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 92901..93778 -
1696251117.749848-CDS-E-siliculosus-1a_M_contig96:92900..937781696251117.749848-CDS-E-siliculosus-1a_M_contig96:92900..93778Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 92901..93778 -
1622936528.1645558-CDS-E-siliculosus-1a_M_contig96:94311..943551622936528.1645558-CDS-E-siliculosus-1a_M_contig96:94311..94355Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 94312..94355 -
1696251117.7609408-CDS-E-siliculosus-1a_M_contig96:94311..943551696251117.7609408-CDS-E-siliculosus-1a_M_contig96:94311..94355Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 94312..94355 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig96.17556.1

>prot_E-siliculosus-1a_M_contig96.17556.1 ID=prot_E-siliculosus-1a_M_contig96.17556.1|Name=mRNA_E-siliculosus-1a_M_contig96.17556.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=467bp
MAAQSFFYRGAAFRGLGSGSCSNGLRAGRLAGRVNHHHHRRLHLLANPTA
TSAHRRISSNMMIGSGSSRPPASAADPRGRIHELATSSSSGEDGGSGRRR
SKSRRRRRSRSEDEKDGRQAGKARGDGSPLRGGGAGGHGAPVRVKKRESA
GEDGDARRRRRGGRPAAKKRKKGGADDNGVDIRSSRRRSRSPKQQQQGGG
GVPQLPLFGLDIPEDRVHVVDTPEGVRDAAAVLSRSVLMSIDTETQPSFA
VGEWHPTSLLQVATRDADGEEDVLVIDLLSLKDGLLLPESLSEALSGPFG
SPNVVKLAGVGLANDLDEMSFAFENTPFLQQVPGVLNLNALNIKLTGGAC
DDQGTPRDLGLRKLASMYLGRSLSKRQQMSRWARRPLQSAQVNYAACDAL
VALRVLDALLLALGSLDVRELCTTWTPRRYSEEGLGKEKVVRLRRKLAAR
ASAVGREHIRYESGNG*
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mRNA from alignment at E-siliculosus-1a_M_contig96:89388..94390-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig96.17556.1 ID=mRNA_E-siliculosus-1a_M_contig96.17556.1|Name=mRNA_E-siliculosus-1a_M_contig96.17556.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=5003bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:89388..94390- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TGCGACTTCATCGGTGCTTCGCGACTGGCGTGTATATGGCAGCTCAGAGC
TTCTTTTACCGAGGAGCTGCGTTCAGAGGGTAGGTACGGAACATCTGGGT
AAAAGCTGACGGTTCGGGGGCTCGAGGTCGACAAAAGGCATACCTGGTAC
ACATGTTCCTTGACGTTGGGTTGGCGGTAGCGTGTTTCTGACAGACCTGC
TGCCTTCCATCACTGCACTACCAGAGCATTTCAGCCGAAGGTCATTGAAC
TTCGGCATGACCCTTTTGGAGCTACCGTGCAGAGCTGCGGCTGCCTTTTC
GTCATCGCCGCACGTTTTGTATCTGTCTGGTGCGCGCGCACAGATCCCCC
ATGTCTGACCGGATTTCTGCAGTAGACCGCCTAGATGTACAGCGTTACCA
TATCTGTGAATGTACATGTAGTGACATGGCTGTATATAGGACGAGAGGCC
TGCTACATCATGCATGGTACACGTCTAGACTGACCGATACCCCCCCACCT
CCATGTTTGTCGCCGAACTGCCCAAGAGTATCCCGTGCGAGGTCCACTAC
TATGCACATGTACCCTGAAGGACTTCCCTTAACCCATCCCCCCCCCCTGC
GTTTGTCGCCAGGCTTGGCAGCGGTAGCTGCAGCAACGGACTGCGCGCGG
GGCGGCTCGCAGGCCGAGTCAACCACCACCACCACCGACGCCTCCACCTC
CTCGCAAATCCCACAGCAACAAGCGCCCACAGAAGAATAAGCAGCAACAT
GATGATCGGTAGTGGTAGTAGCAGACCACCGGCATCCGCCGCCGACCCAC
GCGGCCGAATACACGAGCTCGCGACCAGTAGCAGCAGCGGCGAAGACGGC
GGGTCCGGCCGAAGACGCAGCAAGTCCCGCCGGCGTCGCCGCTCCCGCAG
CGAGGACGAAAAGGACGGGCGGCAGGCGGGCAAGGCCCGCGGGGACGGCT
CGCCGCTGAGGGGGGGGGGGGCGGGCGGCCACGGAGCCCCCGTCAGGGTG
AAGAAGAGGGAAAGCGCGGGCGAGGACGGGGATGCGCGGCGGCGGCGGCG
CGGCGGGAGGCCGGCGGCCAAGAAGAGGAAGAAAGGCGGCGCGGACGATA
ACGGGGTAGACATAAGGAGCAGCCGCCGCCGTAGCCGGAGTCCGAAGCAA
CAACAACAGGGGGGCGGCGGCGTGCCGCAGCTTCCCCTGTTCGGGCTGGA
CATCCCGGAGGACCGCGTGCACGTGGTGGACACGCCGGAGGGCGTGCGGG
ACGCCGCGGCCGTGCTCAGCAGGAGCGTGTTGATGTCCATAGACACGGAG
ACGCAGCCGTCGTTCGCCGTGGGAGAGTGGCACCCGACGTCCCTGCTGCA
GGTGGCCACGAGGGACGCTGACGGGGAGGAGGACGTGCTCGTGATAGACC
TGCTCTCCCTCAAGGACGGCCTGCTCCTGCCCGAGAGCTTGAGCGAGGCC
CTGTCCGGTCCGTTCGGCTCGCCGAACGTGGTCAAGCTAGGTGGGCCCCT
ACACGTAGGTCTCATGCCCACTAATGTATTCGGTAAATTGTTCCTACAAC
AGTTTCCTCCCTGCTTGCGATTTGTTGACCACATAATATGAATATGAGGG
TGATAGATATTTACTGGTGGCGTCCTCAATCTCGCCTTTTTTGTGTGGGT
TTCAAGCCCCCCCCCCTTTGCCGGCGTTTTACTCTCTCCTTGCGTGAGCT
TTGTGTTTCCTGTTTTTTTTGTTTTTGTTTTTTTTCCCGCAAGCAGGTGT
CGGATTAGCCAACGACTTGGACGAGATGTCGTTCGCCTTTGAAAACACCC
CGTTCCTGCAGCAAGTCCCAGGAGTGCTCAACCTTAACGCTCTCAACATC
AAGCTGACAGGAGGAGCTTGCGACGACCAAGGCACCCCTCGCGACTTGGG
GCTTAGAAAGCTCGCGTCAATGTGAGCACCTATTTCGCGTCGGCGGGCGA
GGGGGGGGGGGGTGTACTCATAGCCGTGTATGCCGAAGTCGTTAGACCAT
TGCCGTCGTCGCATCCCTACAAAGCCGGGACGAAGCACGCGAGGTTTTCA
ACGGACCATGCTAGCACATCACCAATCACGAAGCCCCGTGGGGTATGTAT
TCGGCGAGTCGGGGGGAGGGGGGGGGGGCTATTCGTGTTGCTTCTCTAAT
GGTTGATAGAGACCACGGGCAACGACTACGCGTCTCAGAATGACGCGAGC
GGGGCTTAGCTGGTGCGTGGGATGCTTGTTGCGATGCCTGCCTTTTTGGC
GATTGACCCCGCAAACTTGGCCTGTGTCAGACCCAGCCCAAACCCGACAA
TCCTGGCCCTAGCCATTTGTCAAGTACCAGCACTGCTGTAGTTGGTGTAC
GGCTATCGAAGGAACTGCTTTCGAAGGACTTCGACTTGTCGACTTGTCAT
ATACCACATTTTGATAAAGCTATCAGGAAAGCTTCAGCAGTTGCTCCGCT
GCAGTCCGATTCGGAACGGGGCCACAAGAAACAGCTCAGTCGATACCTGA
CACGTCGACGAAGACTGCCCTGTAGTTGTTTTGTGAACTGGTATGTTGAG
TCCACGTTGATGAGTCTACGTATTTTCCGTGTCTTGGAGAGTTTCCACAA
GACAGTGGTGGTGCTAGGTTCCTCCATGATACGCATACACATACAAGACA
CGGCGTTGTCGTTTGCCGTATGACACACTACAGCAAACGTAGGAAGCAAC
GGTTGTAGGTACGTAGGAAAGGTGCTTGCTCCCTTTGTGTTGCCCCGGGC
TCACCCTGAGCGAACAGGAGGCAGTGGACGCCTCTCCTGCTATTTCTAGC
GACGAGACTCGCTCAAAGAAGAAACCGCTGCCTTCCTCCACGCTGCTACT
GTTCGCGGGGGGTTGCGGCTGCCAGGTACCTCGGGCGCTCCCTGAGCAAG
AGACAGCAGATGTCCCGGTGGGCGCGCCGCCCGCTCCAGAGTGCTCAGGT
CAACTACGCGGCGTGCGACGCCCTAGGTGAGAGTTGGGTGCCCTGGCTGC
TCTCGTTTGTTGCTCCTCGTCTATTTCCTGCTGCGTTAACGTTCCTCGGC
GGTATCGGGCTAGTGCTTCTGATGACCGCGTGGGTCTTTGGCGCTTTGTT
TGTCCTTCGGATTTTACGTCATTGTAAAGCGGCGTGTGCTAAAGGGTCCG
TTCTTGGCAAGCGGGCATGTAACATATGTGCTTCGCCCGAGTCAGGTCGA
CTCAGCCTCGACACAGCAGGTTGGCGCAAAGCTCGTTGATTTTGTCCTAC
CAGCTGCGGCTGCGGCTGCGGCCTCTGCCCGTAGGCACCCACAAGTGGAC
GCTCGGTGGTATGAGCATGTGGTGGGCAGATTGCGTCGCGATCTTGGTTT
TGGAACCCGAGCCCCATATCGGGCGCTGCTGAGAGAGGTGTTGCTAACAA
CGACCCGTCGTGTCCATGCTATCATTTCAACCCTTCGTGCCGAATATGTA
TCTCCCCAACACGACCCCCGCCTCGCCCCCATTGTCGGCAACACCGCCTA
CTCTCTGTGGTGTTTTTTGTTCGTTTTTTTTTCGTGCCGAGCAGTCGCGC
TGAGGGTTTTAGATGCTCTCTTGCTCGCGTTGGGGTCGTTGGATGTGCGC
GAGCTTTGCACTACCTGGACACCCAGACGTTACTCGTGAGTTGTCTTATT
AGGGTTCGGGTTCCGGTTCGGGTTCGGGTTGGGACTAGGTTCTGGGGAAA
GGAGGGACGGGCGGCTAGTATCTTCGGGAGTGTTGTTGCTTCTGCTGCTG
CCGTTACTTCGAAGATGTAGTAGGTGTTCAGCCAAGACCCTGGGCCAAAG
AAACACAGTACCCCCGGCGTGCTCCGTCCCGGCTTTGTACGGATGCGAGG
TCAATGGTCTAACGACTACGGCATGCACGACTATGAGTACCCCCCCCCTG
GGGCCTCGTACTAGCCAACGCGCCATGCTTTCCTCCGCTTTCCTCAGCGA
CTTCTAGACCCTAGTTTTTCGTTCGCTCTCGGGAATGTTCCCAGAATGTT
CCCTAGTCACACAAGGACCCGTTTACGATGCGTCCACCACATGTCCCTCT
TACAACCGGAGACGCGAATCACAGTATGTACCCCCCCTCCTTCCCTCGAG
GTCGATTGTCTAACAACTACGGCATGCACGGCTATAAGTACCCCCCCTCA
GCCCGGGCGGAGCGCACCTAATCTAACAGCCACCCAATTCCCCCCTCCCG
CCGCGTGTCCCCTTACGTACATACACCAACCGGAAACGATCATCCATGAC
GCGCGCAGAGAAGAGGGTTTGGGGAAGGAGAAGGTCGTGCGCCTCCGAAG
AAAGCTGGCGGCGAGAGCTAGCGCGGTGGGGCGGGAGCATATCCGATACG
AAAGCGGGAACGGTTGACACATACCGTATCTGCAAAGCTCTTGAGTTTTG
GCAGGTGTAATGGAAGTAGTACATGAGGCCACCCGAATCATTCTGGGGGC
CGAATAGTTAGAGATTTTCTGGGCAAGGGCGGGCAGGGGGGACTCCGGAG
AAAGGTTCGAGCTGGCCCGGAAGTGGATCACCCGTAGACTAATCTCTACC
GTACCGTCTGGATAACCGCAACACATTTCGGTGTCGAGTGGTGCACAATT
TTGTTAGAAATAACCACCGAGGGACTGTATGTGGGGGGCGCGGAAAATGC
TCTCTCAGTTTTTTAACCGGTGACCACATACCCCCGTCGGAGCCCCCCGG
GCCGGGGGGGGGGGGTGCCGGCCCTAAAGGATTCAAGACTTTATGCGAGA
AAGGGAGCGAAGCACCTCCGTCCTGCCAACGCCAATAGCGGGGTGGCATG
GTTGCAGGAGCACACGGCGAATGCTTGTCGGCTCTTTTCTCTGTTGCCGG
CGTGCACTTTTCGGGTGATATTTTTGGTTTGAACCGAACAAAGAGAACGG
TGGGGGCTGCGCATCGAATGGTCCCAAAAGAACGGGGTAACAAGAGTTCT
TGGTGCGGTGTCATGGTTGCCCCCCCGTCCCCACCGATGACGATCGTGTC
GAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:89388..94390-

>mRNA_E-siliculosus-1a_M_contig96.17556.1 ID=mRNA_E-siliculosus-1a_M_contig96.17556.1|Name=mRNA_E-siliculosus-1a_M_contig96.17556.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2802bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:89388..94390- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGCAGCTCAGAGCTTCTTTTACCGAGGAGCTGCGTTCAGAGGATGGCA
GCTCAGAGCTTCTTTTACCGAGGAGCTGCGTTCAGAGGGCTTGGCAGCGG
TAGCTGCAGCAACGGACTGCGCGCGGGGCGGCTCGCAGGCCGAGTCAACC
ACCACCACCACCGACGCCTCCACCTCCTCGCAAATCCCACAGCAACAAGC
GCCCACAGAAGAATAAGCAGCAACATGATGATCGGTAGTGGTAGTAGCAG
ACCACCGGCATCCGCCGCCGACCCACGCGGCCGAATACACGAGCTCGCGA
CCAGTAGCAGCAGCGGCGAAGACGGCGGGTCCGGCCGAAGACGCAGCAAG
TCCCGCCGGCGTCGCCGCTCCCGCAGCGAGGACGAAAAGGACGGGCGGCA
GGCGGGCAAGGCCCGCGGGGACGGCTCGCCGCTGAGGGGGGGGGGGGCGG
GCGGCCACGGAGCCCCCGTCAGGGTGAAGAAGAGGGAAAGCGCGGGCGAG
GACGGGGATGCGCGGCGGCGGCGGCGCGGCGGGAGGCCGGCGGCCAAGAA
GAGGAAGAAAGGCGGCGCGGACGATAACGGGGTAGACATAAGGAGCAGCC
GCCGCCGTAGCCGGAGTCCGAAGCAACAACAACAGGGGGGCGGCGGCGTG
CCGCAGCTTCCCCTGTTCGGGCTGGACATCCCGGAGGACCGCGTGCACGT
GGTGGACACGCCGGAGGGCGTGCGGGACGCCGCGGCCGTGCTCAGCAGGA
GCGTGTTGATGTCCATAGACACGGAGACGCAGCCGTCGTTCGCCGTGGGA
GAGTGGCACCCGACGTCCCTGCTGCAGGTGGCCACGAGGGACGCTGACGG
GGAGGAGGACGTGCTCGTGATAGACCTGCTCTCCCTCAAGGACGGCCTGC
TCCTGCCCGAGAGCTTGAGCGAGGCCCTGTCCGGTCCGTTCGGCTCGCCG
AACGTGGTCAAGCTAGGCTTGGCAGCGGTAGCTGCAGCAACGGACTGCGC
GCGGGGCGGCTCGCAGGCCGAGTCAACCACCACCACCACCGACGCCTCCA
CCTCCTCGCAAATCCCACAGCAACAAGCGCCCACAGAAGAATAAGCAGCA
ACATGATGATCGGTAGTGGTAGTAGCAGACCACCGGCATCCGCCGCCGAC
CCACGCGGCCGAATACACGAGCTCGCGACCAGTAGCAGCAGCGGCGAAGA
CGGCGGGTCCGGCCGAAGACGCAGCAAGTCCCGCCGGCGTCGCCGCTCCC
GCAGCGAGGACGAAAAGGACGGGCGGCAGGCGGGCAAGGCCCGCGGGGAC
GGCTCGCCGCTGAGGGGGGGGGGGGCGGGCGGCCACGGAGCCCCCGTCAG
GGTGAAGAAGAGGGAAAGCGCGGGCGAGGACGGGGATGCGCGGCGGCGGC
GGCGCGGCGGGAGGCCGGCGGCCAAGAAGAGGAAGAAAGGCGGCGCGGAC
GATAACGGGGTAGACATAAGGAGCAGCCGCCGCCGTAGCCGGAGTCCGAA
GCAACAACAACAGGGGGGCGGCGGCGTGCCGCAGCTTCCCCTGTTCGGGC
TGGACATCCCGGAGGACCGCGTGCACGTGGTGGACACGCCGGAGGGCGTG
CGGGACGCCGCGGCCGTGCTCAGCAGGAGCGTGTTGATGTCCATAGACAC
GGAGACGCAGCCGTCGTTCGCCGTGGGAGAGTGGCACCCGACGTCCCTGC
TGCAGGTGGCCACGAGGGACGCTGACGGGGAGGAGGACGTGCTCGTGATA
GACCTGCTCTCCCTCAAGGACGGCCTGCTCCTGCCCGAGAGCTTGAGCGA
GGCCCTGTCCGGTCCGTTCGGCTCGCCGAACGTGGTCAAGCTAGCAGGTG
TCGGATTAGCCAACGACTTGGACGAGATGTCGTTCGCCTTTGAAAACACC
CCGTTCCTGCAGCAAGTCCCAGGAGTGCTCAACCTTAACGCTCTCAACAT
CAAGCTGACAGGAGGAGCTTGCGACGACCAAGGCACCCCTCGCGACTTGG
GGCTTAGAAAGCTCGCGTCAATCAGGTGTCGGATTAGCCAACGACTTGGA
CGAGATGTCGTTCGCCTTTGAAAACACCCCGTTCCTGCAGCAAGTCCCAG
GAGTGCTCAACCTTAACGCTCTCAACATCAAGCTGACAGGAGGAGCTTGC
GACGACCAAGGCACCCCTCGCGACTTGGGGCTTAGAAAGCTCGCGTCAAT
GTACCTCGGGCGCTCCCTGAGCAAGAGACAGCAGATGTCCCGGTGGGCGC
GCCGCCCGCTCCAGAGTGCTCAGGTCAACTACGCGGCGTGCGACGCCCTA
GGTACCTCGGGCGCTCCCTGAGCAAGAGACAGCAGATGTCCCGGTGGGCG
CGCCGCCCGCTCCAGAGTGCTCAGGTCAACTACGCGGCGTGCGACGCCCT
AGTCGCGCTGAGGGTTTTAGATGCTCTCTTGCTCGCGTTGGGGTCGTTGG
ATGTGCGCGAGCTTTGCACTACCTGGACACCCAGACGTTACTCTCGCGCT
GAGGGTTTTAGATGCTCTCTTGCTCGCGTTGGGGTCGTTGGATGTGCGCG
AGCTTTGCACTACCTGGACACCCAGACGTTACTCAGAAGAGGGTTTGGGG
AAGGAGAAGGTCGTGCGCCTCCGAAGAAAGCTGGCGGCGAGAGCTAGCGC
GGTGGGGCGGGAGCATATCCGATACGAAAGCGGGAACGGTTGAAGAAGAG
GGTTTGGGGAAGGAGAAGGTCGTGCGCCTCCGAAGAAAGCTGGCGGCGAG
AGCTAGCGCGGTGGGGCGGGAGCATATCCGATACGAAAGCGGGAACGGTT
GA
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