prot_E-siliculosus-1a_M_contig96.17551.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_E-siliculosus-1a_M_contig96.17551.1
Unique Name	prot_E-siliculosus-1a_M_contig96.17551.1
Type	polypeptide
Organism	Ectocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length	148

Homology

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BLAST of mRNA_E-siliculosus-1a_M_contig96.17551.1 vs. uniprot
Match: A0A6H5L5F6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5F6_9PHAE)

HSP 1 Score: 161 bits (407), Expect = 1.600e-48
Identity = 86/88 (97.73%), Postives = 86/88 (97.73%), Query Frame = 0

Query:    1 MSSTMRSPEITRSPARVAGAGAGGRNLQSIGRQRSLVEDHPDSERIPARTVCAAFSLLVLGLILLCVSANFFAMKHPGSVAFLVLGIV 88
            MSSTMRSPEITRSPARVA AGAG RNLQSIGRQRSLVEDHPDSERIPARTVCAAFSLLVLGLILLCVSANFFAMKHPGSVAFLVLGIV
Sbjct:    1 MSSTMRSPEITRSPARVADAGAGERNLQSIGRQRSLVEDHPDSERIPARTVCAAFSLLVLGLILLCVSANFFAMKHPGSVAFLVLGIV 88

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BLAST of mRNA_E-siliculosus-1a_M_contig96.17551.1 vs. uniprot
Match: D7G3N7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3N7_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 4.130e-30
Identity = 60/63 (95.24%), Postives = 63/63 (100.00%), Query Frame = 0

Query:    1 MSSTMRSPEITRSPARVAGAGAGGRNLQSIGRQRSLVEDHPDSERIPARTVCAAFSLLVLGLI 63
            MSSTMRSPEI+RSPARVAGAGAGGRNLQSIGRQRSLVEDHPD+ERIPARTVCAAFSLLVLGL+
Sbjct:    1 MSSTMRSPEISRSPARVAGAGAGGRNLQSIGRQRSLVEDHPDNERIPARTVCAAFSLLVLGLL 63

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_M_contig96.17551.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_M_contig96.17551.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5L5F6_9PHAE	1.600e-48	97.73	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7G3N7_ECTSI	4.130e-30	95.24	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 101..120
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 121..140
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..50
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 141..147
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 79..100
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 74..78
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 51..73
None	No IPR available	TMHMM	TMhelix		coord: 51..73
None	No IPR available	TMHMM	TMhelix		coord: 83..105

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-siliculosus-1a_M_contig96	contig	E-siliculosus-1a_M_contig96:50639..52379 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_M_contig96.17551.1	mRNA_E-siliculosus-1a_M_contig96.17551.1	Ectocarpus siliculosus Ec864m_EcPH12_78m male	mRNA	E-siliculosus-1a_M_contig96 50025..52730 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_E-siliculosus-1a_M_contig96.17551.1 ID=prot_E-siliculosus-1a_M_contig96.17551.1|Name=mRNA_E-siliculosus-1a_M_contig96.17551.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=148bp
MSSTMRSPEITRSPARVAGAGAGGRNLQSIGRQRSLVEDHPDSERIPART
VCAAFSLLVLGLILLCVSANFFAMKHPGSVAFLVLGIVGKCNPQSLFVIL
SLSCLWGRGVRGKAEDGRPSLLTQSNDFCVLVLSQLYIYMPPYNSRL*