mRNA_E-siliculosus-1a_M_contig96.17568.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig96.17568.1
Unique NamemRNA_E-siliculosus-1a_M_contig96.17568.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig96.17568.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig96contigE-siliculosus-1a_M_contig96:153112..153649 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size321
Model size538
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig96.17568.1prot_E-siliculosus-1a_M_contig96.17568.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig96 153170..153490 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936526.577362-UTR-E-siliculosus-1a_M_contig96:153111..1531691622936526.577362-UTR-E-siliculosus-1a_M_contig96:153111..153169Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig96 153112..153169 +
1696251117.0957012-UTR-E-siliculosus-1a_M_contig96:153111..1531691696251117.0957012-UTR-E-siliculosus-1a_M_contig96:153111..153169Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig96 153112..153169 +
1622936526.6538854-UTR-E-siliculosus-1a_M_contig96:153490..1536491622936526.6538854-UTR-E-siliculosus-1a_M_contig96:153490..153649Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig96 153491..153649 +
1696251117.1149487-UTR-E-siliculosus-1a_M_contig96:153490..1536491696251117.1149487-UTR-E-siliculosus-1a_M_contig96:153490..153649Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig96 153491..153649 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936526.6403985-CDS-E-siliculosus-1a_M_contig96:153169..1534901622936526.6403985-CDS-E-siliculosus-1a_M_contig96:153169..153490Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 153170..153490 +
1696251117.1053753-CDS-E-siliculosus-1a_M_contig96:153169..1534901696251117.1053753-CDS-E-siliculosus-1a_M_contig96:153169..153490Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 153170..153490 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig96.17568.1

>prot_E-siliculosus-1a_M_contig96.17568.1 ID=prot_E-siliculosus-1a_M_contig96.17568.1|Name=mRNA_E-siliculosus-1a_M_contig96.17568.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=107bp
MELRPVRLVRGKRDATFGGVEFAPTDAVHSNCLVPQAKVDVSSLRSGTSS
MRHTATRHRLHATGVPSSVWRVFSKPNYYNNANGLIFASKNLSGLHRVFR
STKYVG*
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mRNA from alignment at E-siliculosus-1a_M_contig96:153112..153649+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig96.17568.1 ID=mRNA_E-siliculosus-1a_M_contig96.17568.1|Name=mRNA_E-siliculosus-1a_M_contig96.17568.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=538bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:153112..153649+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GGGCCTCGAGCACCTGTAACCAATCGGAGAAAGACGGCGAGGAAGAGCGT
ACGATGTAATGGAGCTCCGGCCTGTCCGACTTGTAAGAGGTAAACGGGAT
GCGACCTTCGGAGGGGTTGAGTTCGCCCCAACTGATGCTGTGCATTCAAA
TTGCTTGGTGCCACAAGCTAAGGTTGATGTTTCTTCGTTGCGCTCCGGGA
CGAGCAGCATGCGACACACCGCCACCAGGCATCGCCTTCATGCAACCGGT
GTGCCATCATCTGTCTGGCGTGTATTTTCGAAGCCGAACTATTATAATAA
CGCTAATGGTTTGATATTCGCTTCTAAGAATCTCAGTGGCCTTCACAGGG
TTTTTCGATCAACTAAATATGTTGGATAAAGCATGCAACCAGGGAAGCTG
GGTCAGGGATACATACGGTCTGCGTATCCCCCCTCCCTGTTCTATTTCCT
CAAGAGCTAAATTTCTCGCGCAGGCGGTCCAACTGTCGTCGTCTTCCTCC
TTTGCGCTCACCGGTTCTAGTGGCGAGCCCTTTATCGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:153112..153649+

>mRNA_E-siliculosus-1a_M_contig96.17568.1 ID=mRNA_E-siliculosus-1a_M_contig96.17568.1|Name=mRNA_E-siliculosus-1a_M_contig96.17568.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=642bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:153112..153649+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGAGCTCCGGCCTGTCCGACTTGTAAGAGGTAAACGGGATGCGACCTT
CGGAGGGGTTGAGTTCGCCCCAACTGATGCTGTGCATTCAAATTGCTTGG
TGCCACAAGCTAAGGTTGATGTTTCTTCGTTGCGCTCCGGGACGAGCAGC
ATGCGACACACCGCCACCAGGCATCGCCTTCATGCAACCGGTGTGCCATC
ATCTGTCTGGCGTGTATTTTCGAAGCCGAACTATTATAATAACGCTAATG
GTTTGATATTCGCTTCTAAGAATCTCAGTGGCCTTCACAGGGTTTTTCGA
TCAACTAAATATGTTGGATAAATGGAGCTCCGGCCTGTCCGACTTGTAAG
AGGTAAACGGGATGCGACCTTCGGAGGGGTTGAGTTCGCCCCAACTGATG
CTGTGCATTCAAATTGCTTGGTGCCACAAGCTAAGGTTGATGTTTCTTCG
TTGCGCTCCGGGACGAGCAGCATGCGACACACCGCCACCAGGCATCGCCT
TCATGCAACCGGTGTGCCATCATCTGTCTGGCGTGTATTTTCGAAGCCGA
ACTATTATAATAACGCTAATGGTTTGATATTCGCTTCTAAGAATCTCAGT
GGCCTTCACAGGGTTTTTCGATCAACTAAATATGTTGGATAA
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