Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 378 |
| Model size | 470 |
| Exons | 1 |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936526.5051818-UTR-E-siliculosus-1a_M_contig96:107252..107261 | 1622936526.5051818-UTR-E-siliculosus-1a_M_contig96:107252..107261 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig96 107253..107261 + |
| 1696251117.0598564-UTR-E-siliculosus-1a_M_contig96:107252..107261 | 1696251117.0598564-UTR-E-siliculosus-1a_M_contig96:107252..107261 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig96 107253..107261 + |
| 1622936526.5355804-UTR-E-siliculosus-1a_M_contig96:107639..107722 | 1622936526.5355804-UTR-E-siliculosus-1a_M_contig96:107639..107722 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig96 107640..107722 + |
| 1696251117.083271-UTR-E-siliculosus-1a_M_contig96:107639..107722 | 1696251117.083271-UTR-E-siliculosus-1a_M_contig96:107639..107722 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig96 107640..107722 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936526.5202281-CDS-E-siliculosus-1a_M_contig96:107261..107639 | 1622936526.5202281-CDS-E-siliculosus-1a_M_contig96:107261..107639 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig96 107262..107639 + |
| 1696251117.0712726-CDS-E-siliculosus-1a_M_contig96:107261..107639 | 1696251117.0712726-CDS-E-siliculosus-1a_M_contig96:107261..107639 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig96 107262..107639 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig96.17558.1 >prot_E-siliculosus-1a_M_contig96.17558.1 ID=prot_E-siliculosus-1a_M_contig96.17558.1|Name=mRNA_E-siliculosus-1a_M_contig96.17558.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=126bp
MSCLSCPRAPRATTARRRRSDCHACPQKGYLALGFLPTLPTPTLLWARGL
IPADHNRSKRNQTPTSTHIIHSRRCRDRPEPVCLTLESNGEFLHGYWNKA
LRHPRARFEQTATNARDAHHHHHLA* back to topmRNA from alignment at E-siliculosus-1a_M_contig96:107253..107722+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_M_contig96.17558.1 ID=mRNA_E-siliculosus-1a_M_contig96.17558.1|Name=mRNA_E-siliculosus-1a_M_contig96.17558.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=470bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:107253..107722+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CAACAGCCAATGTCCTGTCTATCGTGCCCTCGTGCCCCCCGGGCTACTAC
AGCGCGACGGCGTCGGAGCGATTGTCATGCCTGCCCGCAAAAAGGCTATC
TGGCATTGGGCTTTCTACCTACTCTCCCAACACCCACCCTTCTCTGGGCA
CGGGGATTGATACCCGCTGATCACAACCGCTCGAAACGAAACCAAACGCC
GACGTCAACACACATAATCCATTCGAGGCGGTGTCGAGATCGACCAGAAC
CCGTGTGTCTCACGCTAGAATCTAACGGCGAATTTTTACATGGCTACTGG
AATAAGGCGCTACGTCACCCCCGCGCGCGTTTCGAGCAGACCGCAACCAA
CGCAAGGGACGCTCACCATCATCATCATCTGGCGTAGGGAGAGAGCGTCG
ACGTTCAAGCACTACACGCTACTAAAGGAACAGAAAGCACAAAAAAAAAA
AACATCCGACCCGACGTCCG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:107253..107722+ >mRNA_E-siliculosus-1a_M_contig96.17558.1 ID=mRNA_E-siliculosus-1a_M_contig96.17558.1|Name=mRNA_E-siliculosus-1a_M_contig96.17558.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=756bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:107253..107722+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTCCTGTCTATCGTGCCCTCGTGCCCCCCGGGCTACTACAGCGCGACG
GCGTCGGAGCGATTGTCATGCCTGCCCGCAAAAAGGCTATCTGGCATTGG
GCTTTCTACCTACTCTCCCAACACCCACCCTTCTCTGGGCACGGGGATTG
ATACCCGCTGATCACAACCGCTCGAAACGAAACCAAACGCCGACGTCAAC
ACACATAATCCATTCGAGGCGGTGTCGAGATCGACCAGAACCCGTGTGTC
TCACGCTAGAATCTAACGGCGAATTTTTACATGGCTACTGGAATAAGGCG
CTACGTCACCCCCGCGCGCGTTTCGAGCAGACCGCAACCAACGCAAGGGA
CGCTCACCATCATCATCATCTGGCGTAGATGTCCTGTCTATCGTGCCCTC
GTGCCCCCCGGGCTACTACAGCGCGACGGCGTCGGAGCGATTGTCATGCC
TGCCCGCAAAAAGGCTATCTGGCATTGGGCTTTCTACCTACTCTCCCAAC
ACCCACCCTTCTCTGGGCACGGGGATTGATACCCGCTGATCACAACCGCT
CGAAACGAAACCAAACGCCGACGTCAACACACATAATCCATTCGAGGCGG
TGTCGAGATCGACCAGAACCCGTGTGTCTCACGCTAGAATCTAACGGCGA
ATTTTTACATGGCTACTGGAATAAGGCGCTACGTCACCCCCGCGCGCGTT
TCGAGCAGACCGCAACCAACGCAAGGGACGCTCACCATCATCATCATCTG
GCGTAG back to top
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