mRNA_E-siliculosus-1a_M_contig96.17558.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig96.17558.1
Unique NamemRNA_E-siliculosus-1a_M_contig96.17558.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig96.17558.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig96contigE-siliculosus-1a_M_contig96:107253..107722 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size378
Model size470
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig96.17558.1prot_E-siliculosus-1a_M_contig96.17558.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig96 107262..107639 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936526.5051818-UTR-E-siliculosus-1a_M_contig96:107252..1072611622936526.5051818-UTR-E-siliculosus-1a_M_contig96:107252..107261Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig96 107253..107261 +
1696251117.0598564-UTR-E-siliculosus-1a_M_contig96:107252..1072611696251117.0598564-UTR-E-siliculosus-1a_M_contig96:107252..107261Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig96 107253..107261 +
1622936526.5355804-UTR-E-siliculosus-1a_M_contig96:107639..1077221622936526.5355804-UTR-E-siliculosus-1a_M_contig96:107639..107722Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig96 107640..107722 +
1696251117.083271-UTR-E-siliculosus-1a_M_contig96:107639..1077221696251117.083271-UTR-E-siliculosus-1a_M_contig96:107639..107722Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig96 107640..107722 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936526.5202281-CDS-E-siliculosus-1a_M_contig96:107261..1076391622936526.5202281-CDS-E-siliculosus-1a_M_contig96:107261..107639Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 107262..107639 +
1696251117.0712726-CDS-E-siliculosus-1a_M_contig96:107261..1076391696251117.0712726-CDS-E-siliculosus-1a_M_contig96:107261..107639Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 107262..107639 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig96.17558.1

>prot_E-siliculosus-1a_M_contig96.17558.1 ID=prot_E-siliculosus-1a_M_contig96.17558.1|Name=mRNA_E-siliculosus-1a_M_contig96.17558.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=126bp
MSCLSCPRAPRATTARRRRSDCHACPQKGYLALGFLPTLPTPTLLWARGL
IPADHNRSKRNQTPTSTHIIHSRRCRDRPEPVCLTLESNGEFLHGYWNKA
LRHPRARFEQTATNARDAHHHHHLA*
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mRNA from alignment at E-siliculosus-1a_M_contig96:107253..107722+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig96.17558.1 ID=mRNA_E-siliculosus-1a_M_contig96.17558.1|Name=mRNA_E-siliculosus-1a_M_contig96.17558.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=470bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:107253..107722+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CAACAGCCAATGTCCTGTCTATCGTGCCCTCGTGCCCCCCGGGCTACTAC
AGCGCGACGGCGTCGGAGCGATTGTCATGCCTGCCCGCAAAAAGGCTATC
TGGCATTGGGCTTTCTACCTACTCTCCCAACACCCACCCTTCTCTGGGCA
CGGGGATTGATACCCGCTGATCACAACCGCTCGAAACGAAACCAAACGCC
GACGTCAACACACATAATCCATTCGAGGCGGTGTCGAGATCGACCAGAAC
CCGTGTGTCTCACGCTAGAATCTAACGGCGAATTTTTACATGGCTACTGG
AATAAGGCGCTACGTCACCCCCGCGCGCGTTTCGAGCAGACCGCAACCAA
CGCAAGGGACGCTCACCATCATCATCATCTGGCGTAGGGAGAGAGCGTCG
ACGTTCAAGCACTACACGCTACTAAAGGAACAGAAAGCACAAAAAAAAAA
AACATCCGACCCGACGTCCG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:107253..107722+

>mRNA_E-siliculosus-1a_M_contig96.17558.1 ID=mRNA_E-siliculosus-1a_M_contig96.17558.1|Name=mRNA_E-siliculosus-1a_M_contig96.17558.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=756bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:107253..107722+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTCCTGTCTATCGTGCCCTCGTGCCCCCCGGGCTACTACAGCGCGACG
GCGTCGGAGCGATTGTCATGCCTGCCCGCAAAAAGGCTATCTGGCATTGG
GCTTTCTACCTACTCTCCCAACACCCACCCTTCTCTGGGCACGGGGATTG
ATACCCGCTGATCACAACCGCTCGAAACGAAACCAAACGCCGACGTCAAC
ACACATAATCCATTCGAGGCGGTGTCGAGATCGACCAGAACCCGTGTGTC
TCACGCTAGAATCTAACGGCGAATTTTTACATGGCTACTGGAATAAGGCG
CTACGTCACCCCCGCGCGCGTTTCGAGCAGACCGCAACCAACGCAAGGGA
CGCTCACCATCATCATCATCTGGCGTAGATGTCCTGTCTATCGTGCCCTC
GTGCCCCCCGGGCTACTACAGCGCGACGGCGTCGGAGCGATTGTCATGCC
TGCCCGCAAAAAGGCTATCTGGCATTGGGCTTTCTACCTACTCTCCCAAC
ACCCACCCTTCTCTGGGCACGGGGATTGATACCCGCTGATCACAACCGCT
CGAAACGAAACCAAACGCCGACGTCAACACACATAATCCATTCGAGGCGG
TGTCGAGATCGACCAGAACCCGTGTGTCTCACGCTAGAATCTAACGGCGA
ATTTTTACATGGCTACTGGAATAAGGCGCTACGTCACCCCCGCGCGCGTT
TCGAGCAGACCGCAACCAACGCAAGGGACGCTCACCATCATCATCATCTG
GCGTAG
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