mRNA_E-siliculosus-1a_M_contig96.17549.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig96.17549.1
Unique NamemRNA_E-siliculosus-1a_M_contig96.17549.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig96.17549.1 vs. uniprot
Match: D7G3N9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3N9_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 2.050e-8
Identity = 29/31 (93.55%), Postives = 29/31 (93.55%), Query Frame = -2 
Query:    6 MAHGGAASIASIGMIAALGHRRARVQGLRHK 98
            MAH GA SIASIGMIAALGHRRARVQGLRHK
Sbjct:    1 MAHSGAGSIASIGMIAALGHRRARVQGLRHK 31
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig96.17549.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3N9_ECTSI2.050e-893.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig96contigE-siliculosus-1a_M_contig96:29432..29754 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size321
Model size324
Exons1
Hectar predicted targeting categorymitochondrion
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936526.4675794-CDS-E-siliculosus-1a_M_contig96:29431..297521622936526.4675794-CDS-E-siliculosus-1a_M_contig96:29431..29752Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 29432..29752 +
1696251117.0461073-CDS-E-siliculosus-1a_M_contig96:29431..297521696251117.0461073-CDS-E-siliculosus-1a_M_contig96:29431..29752Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 29432..29752 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig96.17549.1prot_E-siliculosus-1a_M_contig96.17549.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig96 29432..29752 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig96.17549.1

>prot_E-siliculosus-1a_M_contig96.17549.1 ID=prot_E-siliculosus-1a_M_contig96.17549.1|Name=mRNA_E-siliculosus-1a_M_contig96.17549.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=107bp
LTLCRSPCTRARRWPKAAIIPIEAIEAAPPWAITSRASAPLLGGYDHSTN
LLVDQLGKRRQTCLRWAISNACCSTAVSHSSRAQAESSSRATGREPAACF
ARLVVPQ
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mRNA from alignment at E-siliculosus-1a_M_contig96:29432..29754+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig96.17549.1 ID=mRNA_E-siliculosus-1a_M_contig96.17549.1|Name=mRNA_E-siliculosus-1a_M_contig96.17549.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=323bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:29432..29754+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CTCACCTTGTGCCGCAGCCCTTGCACCCGGGCGCGCCGGTGGCCCAAAGC
TGCGATCATCCCAATCGAGGCAATCGAGGCTGCTCCGCCGTGGGCCATAA
CATCTCGTGCCTCAGCTCCGCTTCTTGGAGGCTACGATCACAGCACCAAC
TTGCTAGTTGACCAGCTTGGGAAACGTCGTCAGACCTGTTTACGGTGGGC
GATCTCGAACGCGTGCTGCTCGACAGCAGTGTCACACAGCAGCAGAGCAC
AGGCAGAGAGCAGCAGCAGAGCGACGGGGAGGGAGCCCGCCGCTTGCTTC
GCTCGACTCGTAGTACCCCAGCC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:29432..29754+

>mRNA_E-siliculosus-1a_M_contig96.17549.1 ID=mRNA_E-siliculosus-1a_M_contig96.17549.1|Name=mRNA_E-siliculosus-1a_M_contig96.17549.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=642bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:29432..29754+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CTCACCTTGTGCCGCAGCCCTTGCACCCGGGCGCGCCGGTGGCCCAAAGC
TGCGATCATCCCAATCGAGGCAATCGAGGCTGCTCCGCCGTGGGCCATAA
CATCTCGTGCCTCAGCTCCGCTTCTTGGAGGCTACGATCACAGCACCAAC
TTGCTAGTTGACCAGCTTGGGAAACGTCGTCAGACCTGTTTACGGTGGGC
GATCTCGAACGCGTGCTGCTCGACAGCAGTGTCACACAGCAGCAGAGCAC
AGGCAGAGAGCAGCAGCAGAGCGACGGGGAGGGAGCCCGCCGCTTGCTTC
GCTCGACTCGTAGTACCCCAGCTCACCTTGTGCCGCAGCCCTTGCACCCG
GGCGCGCCGGTGGCCCAAAGCTGCGATCATCCCAATCGAGGCAATCGAGG
CTGCTCCGCCGTGGGCCATAACATCTCGTGCCTCAGCTCCGCTTCTTGGA
GGCTACGATCACAGCACCAACTTGCTAGTTGACCAGCTTGGGAAACGTCG
TCAGACCTGTTTACGGTGGGCGATCTCGAACGCGTGCTGCTCGACAGCAG
TGTCACACAGCAGCAGAGCACAGGCAGAGAGCAGCAGCAGAGCGACGGGG
AGGGAGCCCGCCGCTTGCTTCGCTCGACTCGTAGTACCCCAG
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