mRNA_E-siliculosus-1a_M_contig96.17553.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig96.17553.1
Unique NamemRNA_E-siliculosus-1a_M_contig96.17553.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig96.17553.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig96contigE-siliculosus-1a_M_contig96:76343..77540 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size174
Model size271
Exons2
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig96.17553.1prot_E-siliculosus-1a_M_contig96.17553.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig96 76439..77540 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936525.9829347-UTR-E-siliculosus-1a_M_contig96:76342..764381622936525.9829347-UTR-E-siliculosus-1a_M_contig96:76342..76438Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig96 76343..76438 -
1696251116.903533-UTR-E-siliculosus-1a_M_contig96:76342..764381696251116.903533-UTR-E-siliculosus-1a_M_contig96:76342..76438Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig96 76343..76438 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936526.007755-CDS-E-siliculosus-1a_M_contig96:76438..765391622936526.007755-CDS-E-siliculosus-1a_M_contig96:76438..76539Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 76439..76539 -
1696251116.9138925-CDS-E-siliculosus-1a_M_contig96:76438..765391696251116.9138925-CDS-E-siliculosus-1a_M_contig96:76438..76539Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 76439..76539 -
1622936526.024405-CDS-E-siliculosus-1a_M_contig96:77467..775401622936526.024405-CDS-E-siliculosus-1a_M_contig96:77467..77540Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 77468..77540 -
1696251116.9255526-CDS-E-siliculosus-1a_M_contig96:77467..775401696251116.9255526-CDS-E-siliculosus-1a_M_contig96:77467..77540Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 77468..77540 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig96.17553.1

>prot_E-siliculosus-1a_M_contig96.17553.1 ID=prot_E-siliculosus-1a_M_contig96.17553.1|Name=mRNA_E-siliculosus-1a_M_contig96.17553.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=58bp
KAQRCEGLLLVANTGHPQQGVQDSGFGGRRLRARPGSKRREERQTPVKKK
TPAGLCC*
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mRNA from alignment at E-siliculosus-1a_M_contig96:76343..77540-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig96.17553.1 ID=mRNA_E-siliculosus-1a_M_contig96.17553.1|Name=mRNA_E-siliculosus-1a_M_contig96.17553.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1198bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:76343..77540- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
AAGGCGCAGCGCTGTGAAGGATTACTGCTTGTTGCGAACACAGGACATCC
ACAGCAAGGCGTCCAGGATTCCGGTGAGCGACCTCTGTGTCCTGCCCTCG
TTACTTCTGTGACTGGATTTGGCCCGATTTCAACTTCACGCGCCTCTTTC
TTTGATAATTTTGCAAAAAGTTTGGAAGCTGCCCTACGGGTGTGGAAGCC
GTGTGTGCGGTGCTGGTTTGGTCGTGCGCGGGGTAGCTCGTGTGCATCTC
CCGTATGGCTTTTCTCTGCTCCACCTCCGTTGGCTGCAGGGTCCTTTGCT
TGCAAGGTCTGCTGTCTCCGAGGCACCAACGTTCCCCGCAAACAGCTTGC
TCTCGTCCAAAAAAGAAAAGACAGGTCAGGGCGGCACTGCTCGTTGTTAC
ACCAGGCCGACGGAGAACACCAGGCAGCAAACGTAGCCAACAGCCAGGAG
CTCTCACGCCCGTTTTTCGTGCCGCGGCTAGTCACTCCTCTTCATGTGCC
TCTGCCACAAGTGCTGCCCCCCCGTACAGCAAGTGCTCCAAGGCTGAGAT
TGGCTTGTAGTACGATCGCGACGCCTCTGTTTCGCCTTGACCCAAACTTT
ACAGTAGATCTCTTCCTGCGAGGGCGCCGGCAGCAGGCAAAGGCGAGACA
GAAAATGCAGCGCAGAGAAGTGCTACCAAATGGAAAACATTTACTCCAAA
CTTTCTCTGCGGCTGGTGACTGTGTGCGCACCGCAAGAGGCCTTTTGCAC
GTCATCACCGTCGTCGTAGTGCCCGGCCAACCTGTTTGCTGGAGAGGGAC
GCATACAAGGCTGCTGCTGCTACTGCTGCAACACACACGCCGCAGCGCCG
CAGCAGCAGCGGGAATCACGCAAAACACACGCCTTTTTCGTCTGCTGCCG
CTTTTTTGAACTACATCCCAAGAACTATCGCTCGAGGGTTCCGCTGGCTC
ATCCAATTCGTGTGTAATGTGTGTGCTCTGCGGTTTGGTGCGTGGCAGCA
GGTTTCGGCGGGCGAAGACTGAGGGCGCGCCCCGGCAGCAAGAGGCGAGA
GGAGCGGCAGACGCCGGTGAAAAAGAAAACACCGGCGGGGCTGTGTTGTT
AAACGCAAGATACCACCGGAGTGCTATACTAGAGGTCGACACTCAGGAGC
ACGCGCCGGCAGGATTATCATCGCTACTGGCGCGGGGAGCTATTAAAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:76343..77540-

>mRNA_E-siliculosus-1a_M_contig96.17553.1 ID=mRNA_E-siliculosus-1a_M_contig96.17553.1|Name=mRNA_E-siliculosus-1a_M_contig96.17553.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=348bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:76343..77540- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
AAGGCGCAGCGCTGTGAAGGATTACTGCTTGTTGCGAACACAGGACATCC
ACAGCAAGGCGTCCAGGATTCCGAAGGCGCAGCGCTGTGAAGGATTACTG
CTTGTTGCGAACACAGGACATCCACAGCAAGGCGTCCAGGATTCCGGTTT
CGGCGGGCGAAGACTGAGGGCGCGCCCCGGCAGCAAGAGGCGAGAGGAGC
GGCAGACGCCGGTGAAAAAGAAAACACCGGCGGGGCTGTGTTGTTAAGTT
TCGGCGGGCGAAGACTGAGGGCGCGCCCCGGCAGCAAGAGGCGAGAGGAG
CGGCAGACGCCGGTGAAAAAGAAAACACCGGCGGGGCTGTGTTGTTAA
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