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Homology
BLAST of mRNA_E-siliculosus-1a_M_contig953.17545.1 vs. uniprot
Match: D7FTK7_ECTSI (ULP_PROTEASE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK7_ECTSI) HSP 1 Score: 49.3 bits (116), Expect = 1.010e-5 Identity = 20/46 (43.48%), Postives = 29/46 (63.04%), Query Frame = 1 Query: 1 FMEERWKNTGRQRMSFDFGVLPLVRPEAPQQANGFDCGVYVIRYCK 138
+++E W + R + D +LPLV E+PQQ NG DCG+ V+R K
Sbjct: 22 YLQEAWSSNDRGEATVDKDLLPLVITESPQQGNGCDCGILVLRNAK 67
BLAST of mRNA_E-siliculosus-1a_M_contig953.17545.1 vs. uniprot
Match: A0A835YUH4_9STRA (ULP_PROTEASE domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUH4_9STRA) HSP 1 Score: 48.1 bits (113), Expect = 4.060e-5 Identity = 21/48 (43.75%), Postives = 30/48 (62.50%), Query Frame = 1 Query: 1 FMEERWKNTGRQRMSFDFGV--LPLVRPEAPQQANGFDCGVYVIRYCK 138
+++ WK + V LPLV+P APQQ+NG DCGVYV++Y +
Sbjct: 77 YVQAEWKAAYPEAPPLTLSVRDLPLVKPRAPQQSNGCDCGVYVLQYAE 124
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 0 |
| Cds size | 165 |
| Model size | 168 |
| Exons | 1 |
| Hectar predicted targeting category | no signal peptide or anchor |
| BRITE | ko00000,ko01000,ko01002,ko04121 |
| Best eggNOG OG | NA|NA|NA |
| Best tax level | Eukaryota |
| COG Functional cat. | O |
| EC | 3.4.22.68 |
| EggNOG OGs | COG5160@1,KOG0779@2759 |
| EggNOG free text desc. | protein modification by small protein removal |
| GOs | GO:0000075,GO:0000278,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006276,GO:0006323,GO:0006464,GO:0006508,GO:0006807,GO:0006996,GO:0007049,GO:0007088,GO:0007093,GO:0007094,GO:0007346,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009987,GO:0010564,GO:0010639,GO:0010948,GO:0010965,GO:0016043,GO:0016787,GO:0016926,GO:0016929,GO:0018193,GO:0018205,GO:0019538,GO:0019783,GO:0022402,GO:0030071,GO:0030261,GO:0031577,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0045786,GO:0045839,GO:0045841,GO:0045930,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051276,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0065007,GO:0070011,GO:0070122,GO:0070138,GO:0070140,GO:0070646,GO:0070647,GO:0071103,GO:0071173,GO:0071174,GO:0071704,GO:0071840,GO:0140096,GO:1901564,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1903047,GO:1905818,GO:1905819,GO:2000816,GO:2001251 |
| KEGG ko | ko:K08596 |
| Seed eggNOG ortholog | 2880.D8LDN6 |
| Seed ortholog evalue | 1.2e-08 |
| Seed ortholog score | 65.1 |
| Taxonomic scope | Eukaryota |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936525.6217546-CDS-E-siliculosus-1a_M_contig953:129..294 | 1622936525.6217546-CDS-E-siliculosus-1a_M_contig953:129..294 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig953 130..294 - |
| 1696251116.8418844-CDS-E-siliculosus-1a_M_contig953:129..294 | 1696251116.8418844-CDS-E-siliculosus-1a_M_contig953:129..294 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig953 130..294 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936525.6399317-UTR-E-siliculosus-1a_M_contig953:294..297 | 1622936525.6399317-UTR-E-siliculosus-1a_M_contig953:294..297 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig953 295..297 - |
| 1696251116.8555653-UTR-E-siliculosus-1a_M_contig953:294..297 | 1696251116.8555653-UTR-E-siliculosus-1a_M_contig953:294..297 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig953 295..297 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig953.17545.1 >prot_E-siliculosus-1a_M_contig953.17545.1 ID=prot_E-siliculosus-1a_M_contig953.17545.1|Name=mRNA_E-siliculosus-1a_M_contig953.17545.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=55bp
MEERWKNTGRQRMSFDFGVLPLVRPEAPQQANGFDCGVYVIRYCKASSTQ
PPHTA back to topmRNA from alignment at E-siliculosus-1a_M_contig953:130..297- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_M_contig953.17545.1 ID=mRNA_E-siliculosus-1a_M_contig953.17545.1|Name=mRNA_E-siliculosus-1a_M_contig953.17545.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=168bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig953:130..297- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TTCATGGAGGAAAGGTGGAAAAACACCGGGCGACAACGTATGTCATTCGA
TTTTGGCGTGCTTCCCCTCGTACGACCGGAAGCGCCCCAGCAGGCTAACG
GATTCGACTGCGGGGTGTACGTGATTCGCTATTGCAAGGCAAGCTCGACA
CAGCCGCCGCACACGGCA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_M_contig953:130..297- >mRNA_E-siliculosus-1a_M_contig953.17545.1 ID=mRNA_E-siliculosus-1a_M_contig953.17545.1|Name=mRNA_E-siliculosus-1a_M_contig953.17545.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=330bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig953:130..297- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGAGGAAAGGTGGAAAAACACCGGGCGACAACGTATGTCATTCGATTT
TGGCGTGCTTCCCCTCGTACGACCGGAAGCGCCCCAGCAGGCTAACGGAT
TCGACTGCGGGGTGTACGTGATTCGCTATTGCAAGGCAAGCTCGACACAG
CCGCCGCACACGGCAATGGAGGAAAGGTGGAAAAACACCGGGCGACAACG
TATGTCATTCGATTTTGGCGTGCTTCCCCTCGTACGACCGGAAGCGCCCC
AGCAGGCTAACGGATTCGACTGCGGGGTGTACGTGATTCGCTATTGCAAG
GCAAGCTCGACACAGCCGCCGCACACGGCA back to top
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