mRNA_E-siliculosus-1a_M_contig953.17545.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig953.17545.1
Unique NamemRNA_E-siliculosus-1a_M_contig953.17545.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig953.17545.1 vs. uniprot
Match: D7FTK7_ECTSI (ULP_PROTEASE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK7_ECTSI)

HSP 1 Score: 49.3 bits (116), Expect = 1.010e-5
Identity = 20/46 (43.48%), Postives = 29/46 (63.04%), Query Frame = 1 
Query:    1 FMEERWKNTGRQRMSFDFGVLPLVRPEAPQQANGFDCGVYVIRYCK 138
            +++E W +  R   + D  +LPLV  E+PQQ NG DCG+ V+R  K
Sbjct:   22 YLQEAWSSNDRGEATVDKDLLPLVITESPQQGNGCDCGILVLRNAK 67
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BLAST of mRNA_E-siliculosus-1a_M_contig953.17545.1 vs. uniprot
Match: A0A835YUH4_9STRA (ULP_PROTEASE domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUH4_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 4.060e-5
Identity = 21/48 (43.75%), Postives = 30/48 (62.50%), Query Frame = 1 
Query:    1 FMEERWKNTGRQRMSFDFGV--LPLVRPEAPQQANGFDCGVYVIRYCK 138
            +++  WK    +       V  LPLV+P APQQ+NG DCGVYV++Y +
Sbjct:   77 YVQAEWKAAYPEAPPLTLSVRDLPLVKPRAPQQSNGCDCGVYVLQYAE 124
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig953.17545.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTK7_ECTSI1.010e-543.48ULP_PROTEASE domain-containing protein n=1 Tax=Ect... [more]
A0A835YUH4_9STRA4.060e-543.75ULP_PROTEASE domain-containing protein n=1 Tax=Tri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig953contigE-siliculosus-1a_M_contig953:130..297 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size165
Model size168
Exons1
Hectar predicted targeting categoryno signal peptide or anchor
BRITEko00000,ko01000,ko01002,ko04121
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.O
EC3.4.22.68
EggNOG OGsCOG5160@1,KOG0779@2759
EggNOG free text desc.protein modification by small protein removal
GOsGO:0000075,GO:0000278,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006276,GO:0006323,GO:0006464,GO:0006508,GO:0006807,GO:0006996,GO:0007049,GO:0007088,GO:0007093,GO:0007094,GO:0007346,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009987,GO:0010564,GO:0010639,GO:0010948,GO:0010965,GO:0016043,GO:0016787,GO:0016926,GO:0016929,GO:0018193,GO:0018205,GO:0019538,GO:0019783,GO:0022402,GO:0030071,GO:0030261,GO:0031577,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0045786,GO:0045839,GO:0045841,GO:0045930,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051276,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0065007,GO:0070011,GO:0070122,GO:0070138,GO:0070140,GO:0070646,GO:0070647,GO:0071103,GO:0071173,GO:0071174,GO:0071704,GO:0071840,GO:0140096,GO:1901564,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1903047,GO:1905818,GO:1905819,GO:2000816,GO:2001251
KEGG koko:K08596
Seed eggNOG ortholog2880.D8LDN6
Seed ortholog evalue1.2e-08
Seed ortholog score65.1
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936525.6217546-CDS-E-siliculosus-1a_M_contig953:129..2941622936525.6217546-CDS-E-siliculosus-1a_M_contig953:129..294Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig953 130..294 -
1696251116.8418844-CDS-E-siliculosus-1a_M_contig953:129..2941696251116.8418844-CDS-E-siliculosus-1a_M_contig953:129..294Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig953 130..294 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936525.6399317-UTR-E-siliculosus-1a_M_contig953:294..2971622936525.6399317-UTR-E-siliculosus-1a_M_contig953:294..297Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig953 295..297 -
1696251116.8555653-UTR-E-siliculosus-1a_M_contig953:294..2971696251116.8555653-UTR-E-siliculosus-1a_M_contig953:294..297Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig953 295..297 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig953.17545.1prot_E-siliculosus-1a_M_contig953.17545.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig953 130..294 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig953.17545.1

>prot_E-siliculosus-1a_M_contig953.17545.1 ID=prot_E-siliculosus-1a_M_contig953.17545.1|Name=mRNA_E-siliculosus-1a_M_contig953.17545.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=55bp
MEERWKNTGRQRMSFDFGVLPLVRPEAPQQANGFDCGVYVIRYCKASSTQ
PPHTA
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mRNA from alignment at E-siliculosus-1a_M_contig953:130..297-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig953.17545.1 ID=mRNA_E-siliculosus-1a_M_contig953.17545.1|Name=mRNA_E-siliculosus-1a_M_contig953.17545.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=168bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig953:130..297- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TTCATGGAGGAAAGGTGGAAAAACACCGGGCGACAACGTATGTCATTCGA
TTTTGGCGTGCTTCCCCTCGTACGACCGGAAGCGCCCCAGCAGGCTAACG
GATTCGACTGCGGGGTGTACGTGATTCGCTATTGCAAGGCAAGCTCGACA
CAGCCGCCGCACACGGCA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig953:130..297-

>mRNA_E-siliculosus-1a_M_contig953.17545.1 ID=mRNA_E-siliculosus-1a_M_contig953.17545.1|Name=mRNA_E-siliculosus-1a_M_contig953.17545.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=330bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig953:130..297- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGAGGAAAGGTGGAAAAACACCGGGCGACAACGTATGTCATTCGATTT
TGGCGTGCTTCCCCTCGTACGACCGGAAGCGCCCCAGCAGGCTAACGGAT
TCGACTGCGGGGTGTACGTGATTCGCTATTGCAAGGCAAGCTCGACACAG
CCGCCGCACACGGCAATGGAGGAAAGGTGGAAAAACACCGGGCGACAACG
TATGTCATTCGATTTTGGCGTGCTTCCCCTCGTACGACCGGAAGCGCCCC
AGCAGGCTAACGGATTCGACTGCGGGGTGTACGTGATTCGCTATTGCAAG
GCAAGCTCGACACAGCCGCCGCACACGGCA
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