mRNA_E-siliculosus-1a_M_contig95.17543.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig95.17543.1 vs. uniprot
Match: D7G1Y7_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Y7_ECTSI) HSP 1 Score: 225 bits (573), Expect = 6.170e-70 Identity = 159/251 (63.35%), Postives = 162/251 (64.54%), Query Frame = 1 Query: 82 QQWPRGPRNELHKAAHFGSADRTRALLSSGAFDVNQGDPKGFTPLMLASMEGHSHIVKILLDNGANSSIVASDRGTALGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFVVTSPSGNRFVPLDMAAQYGHAGVVRELLREHGIRGCAGVTGGVRALRGAAKEQHVGVMAVLAEAGVADAGGQALVVAAEFGR 834 +QWPRGPRNELH+AAHFGSADRTRALLSSGA DVNQGDP GFTPLMLASMEG SHIVKILLDNGANSS TALGVXXXXXXXXXXXXXXXXXX V VPLDMAAQYGHAGVVRELLREHGIRGCAGVTGGVRALRGAAKEQHVGVMA+LAEAGVADAGGQALVVAAEFGR Sbjct: 3 EQWPRGPRNELHEAAHFGSADRTRALLSSGAVDVNQGDPAGFTPLMLASMEGQSHIVKILLDNGANSS-------TALGVXXXXXXXXXXXXXXXXXXDIAGQTSDGCTPRRRRRGPPGGREGRESPDRGGREPQQPHLGRVDADVQRGVQGPHGSRPDPDSREGEPAVRRHEPVRVPVPLDMAAQYGHAGVVRELLREHGIRGCAGVTGGVRALRGAAKEQHVGVMAMLAEAGVADAGGQALVVAAEFGR 246
BLAST of mRNA_E-siliculosus-1a_M_contig95.17543.1 vs. uniprot
Match: A0A6H5L3P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3P8_9PHAE) HSP 1 Score: 117 bits (293), Expect = 1.530e-28 Identity = 62/69 (89.86%), Postives = 66/69 (95.65%), Query Frame = 1 Query: 628 MAAQYGHAGVVRELLREHGIRGCAGVTGGVRALRGAAKEQHVGVMAVLAEAGVADAGGQALVVAAEFGR 834 MA QYGHAGVVRELLRE+GIRGCAGVTGGV ALRGAAKEQHVGVMA+LA+AGVADAGGQALV+ AEFGR Sbjct: 1 MAVQYGHAGVVRELLRENGIRGCAGVTGGVPALRGAAKEQHVGVMAMLADAGVADAGGQALVIMAEFGR 69
BLAST of mRNA_E-siliculosus-1a_M_contig95.17543.1 vs. uniprot
Match: D8LL76_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL76_ECTSI) HSP 1 Score: 119 bits (297), Expect = 3.250e-27 Identity = 171/251 (68.13%), Postives = 193/251 (76.89%), Query Frame = 1 Query: 82 QQWPRGPRNELHKAAHFGSADRTRALLSSGAFDVNQGDPKGFTPLMLASMEGHSHIVKILLDNGANSSIVASDRGTALGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFVVTSPSGNRFVPLDMAAQYGHAGVVRELLREHGIRGCAGVTGGVRALRGAAKEQHVGVMAVLAEAGVADAGGQALVVAAEFGR 834 Q+ RGPRNELHKAA GS+ RT +LL+ G D++QGDP+G+TPLM A+ EGHS+++K+LL+ GA+ V D XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SGN FVPLD AA GH V REL++ GIRGCAG + GV AL AA +QH+ VMA+L +AGV D G ALV GR Sbjct: 5 QRLARGPRNELHKAALDGSSQRTESLLAGGRIDIDQGDPRGWTPLMFAAEEGHSNVIKVLLNRGASLLPVDDDDYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLLPTRMSSGNTFVPLDGAALNGHLAVARELVQRFGIRGCAGASAGVDALGQAAVDQHLDVMALLCDAGVVDTG-NALVATVFLGR 254
BLAST of mRNA_E-siliculosus-1a_M_contig95.17543.1 vs. uniprot
Match: A0A6H5JL33_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL33_9PHAE) HSP 1 Score: 116 bits (291), Expect = 1.970e-26 Identity = 145/251 (57.77%), Postives = 173/251 (68.92%), Query Frame = 1 Query: 76 TPQQWPRGPRNELHKAAHFGSADRTRALLSS-GAFDVNQGDPKGFTPLMLASMEGHSHIVKILLDNGANSSIVASDRGTALGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFVVT-SPSGNRFVPLDMAAQYGHAGVVRELLREHGIRGCAGVTGGVRALRGAAKEQHVGVMAVLAEAGVADAGGQALVVAA 822 T Q WPRGP+N+LH+AA+ GS +R ALL+S + ++ G G+TPLMLA+ G S +V+ILL+ GAN S+VA D TAL XXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + +PSG FVPLD AA+YG VVREL+++ I+GC G +GGV ALR AA Q+V VM+VLA+AGV D G +AL+ AA Sbjct: 7 TAQPWPRGPQNDLHRAANDGSVERVVALLASRSSIAIDAGAEYGWTPLMLAAWRGSSRVVRILLNKGANVSVVAEDGHTALHFSTQDGGHPVVTXXXXXXXXXXXXXXXXXXXXXXLAANAGCWEVAQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAKANPLLTKPTPSGVTFVPLDTAAEYGQTEVVRELIKQVSIKGCGGASGGVYALRLAALSQNVDVMSVLADAGVMDTG-EALITAA 256
BLAST of mRNA_E-siliculosus-1a_M_contig95.17543.1 vs. uniprot
Match: D7G1U9_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1U9_ECTSI) HSP 1 Score: 116 bits (290), Expect = 3.570e-26 Identity = 149/253 (58.89%), Postives = 175/253 (69.17%), Query Frame = 1 Query: 76 TPQQWPRGPRNELHKAAHFGSADRTRALLSSGAFDVNQGDPKGFTPLMLASMEGHSHIVKILLDNGANSSIVASDRGTALGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFVVTSPSGNRFVPLDMAAQYGHAGVVRELLREHGIRGCAGVTGGVRALRGAAKEQHVGVMAVLAEAGVADAGGQALVVAAEFGR 834 T Q WPRGP N+LHKAA+ GSADR ALLS+G+ D+NQG+PKG+TPLMLA+ +GHS + K LL+ GAN S+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + Q+GH+ VVREL+++ G+RGC GV+ GV +LR AA EQ+V +M +L GV D G +ALVVAAE+ R Sbjct: 24 TSQLWPRGPTNQLHKAAYHGSADRVDALLSTGSVDINQGNPKGWTPLMLATEKGHSLVAKSLLEKGANVSVAGDGXXXXX----------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQKQHGHSEVVRELIQQLGVRGCGGVSAGVESLRLAATEQYVDIMGILTVGGVVDTG-RALVVAAEYSR 253
BLAST of mRNA_E-siliculosus-1a_M_contig95.17543.1 vs. uniprot
Match: D8LNF8_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNF8_ECTSI) HSP 1 Score: 113 bits (282), Expect = 3.700e-26 Identity = 126/250 (50.40%), Postives = 153/250 (61.20%), Query Frame = 1 Query: 82 QQWPRGPRNELHKAAHFGSADRTRALLSSG-AFDVNQGDPKGFTPLMLASMEGHSHIVKILLDNGANSSIVASDRGTALGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFVVTSP--SGNRFVPLDMAAQYGHAGVVRELLREHGIRGCAGVTGGVRALRGAAKEQHVGVMAVLAEAGVADAGGQALVVAA 822 Q WPRGP+N+LH+AA+ GS +R ALL+S + D+NQG G+TPLMLA+ G S +V+IL + GAN S+VA D TAL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ++T P SG FVPLD AA+YG VV+EL+++ I+GC G +GGV ALR AA Q+V VMAVLA+ GV D G +AL+ AA Sbjct: 9 QPWPRGPQNDLHRAANDGSIERVVALLASRPSIDINQGAEYGWTPLMLAAWRGSSRVVRILPNKGANVSVVADDFHTALHFSTQDGGHPVVTKMLLKAGADFEAVTSEGETPLHLVADSGCWEVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAKANP-LLTKPTSSGVTFVPLDTAAEYGQTEVVQELVQQVSIKGCGGASGGVDALRLAALSQNVDVMAVLADVGVMDTG-EALITAA 256
BLAST of mRNA_E-siliculosus-1a_M_contig95.17543.1 vs. uniprot
Match: D7G1I8_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1I8_ECTSI) HSP 1 Score: 112 bits (279), Expect = 7.330e-25 Identity = 129/240 (53.75%), Postives = 148/240 (61.67%), Query Frame = 1 Query: 82 QQWPRGPRNELHKAAHFGSADRTRALLSSGAFDVNQGDPKGFTPLMLASMEGHSHIVKILLDNGANSSIVASDRGTALGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFVVT-SPSGNRFVPLDMAAQYGHAGVVRELLREHGIRGCAGVTGGVRALRGAAKEQHVGVMAVLAEAGVADAG 798 ++WPRGP+NELH AA GS RT A+LSSG ++NQGDP G+TPLM+AS G++ IV+IL+ GAN IVA TA XXXXXXXXXXXXXX XXXXXXXXXXXX XXXXXXXXXXXXXXXXXXX ++ + S +RFVPLD AA G + VVRE L + GI GC G + G AL AAKEQ V MAVLA AGV D G Sbjct: 7 EKWPRGPKNELHFAADTGSTQRTAAILSSGLININQGDPDGWTPLMVASQRGYTRIVRILVKEGANVLIVADLGFTAXXXXXXXXXXXXXXXXXNAGADLEAATSTNGSRPLHLAADKGHXXXXXXXXXXXXNLNSRRFDRATXXXXXXXXXXXXXXXXXXXAKADPLLIRLNVSRDRFVPLDAAAGKGRSLVVREFLDQLGIDGCGGPSRGAHALYHAAKEQFVDTMAVLANAGVVDTG 246
BLAST of mRNA_E-siliculosus-1a_M_contig95.17543.1 vs. uniprot
Match: A0A6H5KJA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA9_9PHAE) HSP 1 Score: 108 bits (269), Expect = 2.900e-23 Identity = 125/259 (48.26%), Postives = 151/259 (58.30%), Query Frame = 1 Query: 61 MPPARTPQQWPRGPRNELHKAAHFGSADRTRALLSSGAFDVNQGDPKGFTPLMLASMEGHSHIVKILLDNGANSSIVASDRGTALGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFVVT--SPSGNRFVPLDMAAQYGHAGVVRELLREHGIRGCAGVTGGVRALRGAAKEQHVGVMAVLAEAGVADAGGQALVVAAEFG 831 MP PQQ PRGP N LH AA GS + T +L+SGAFD++QG+ G+T LMLAS G++ IV ++L+ GA SI XXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXX + T PSG F+PLD AA+ GH VV EL+R+ GI GC G +GGVRAL+ AA+ +++ +M +L AGV D G ALVVAA +G Sbjct: 1 MPRVPRPQQRPRGPSNRLHAAAECGSFEATATVLASGAFDIDQGNEYGWTALMLASRGGYARIVGMILNKGAQVSITXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVEATTTQHLCXXXXXXXXXXXXXXXXXXXXXXXNLNSRRSDGATPLYTAAWKGNVDAARLLLLAKADPLLTTVPDPSGRTFLPLDAAAENGHPEVVNELIRQVGIDGCGGSSGGVRALQQAAQFKNLNIMVILTNAGVVDTG-LALVVAAGYG 258
BLAST of mRNA_E-siliculosus-1a_M_contig95.17543.1 vs. uniprot
Match: A0A6H5K037_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K037_9PHAE) HSP 1 Score: 103 bits (258), Expect = 8.030e-22 Identity = 161/237 (67.93%), Postives = 180/237 (75.95%), Query Frame = 1 Query: 127 HFGSADRTRALLSSGAFDVNQGDPKGFTPLMLASMEGHSHIVKILLDNGANSSIVASDRGTALGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFV-VTSPSGNRFVPLDMAAQYGHAGVVRELLREHGIRGCAGVTGGVRALRGAAKEQHVGVMAVLAEAGVADAGGQALVVAAEFGR 834 + GSADR ALLS G+ D+NQG+PKG+TPLMLA +G S + K LL GAN S+V XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX V +PSG FVPLD+A Q+GH+ VVREL + G+RGC GV+GGV +LR A EQ V +M +L GV D G +ALVVAAE R Sbjct: 8 YHGSADRVDALLSMGSVDINQGNPKGWTPLMLAVEKGLSRVTKSLLGKGANVSVVGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKANTLLASVPAPSGATFVPLDVAVQHGHSEVVRELTHQLGVRGCGGVSGGVESLRLATTEQDVDIMGILTVGGVVDTG-RALVVAAENSR 243
BLAST of mRNA_E-siliculosus-1a_M_contig95.17543.1 vs. uniprot
Match: D7FY91_ECTSI (EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY91_ECTSI) HSP 1 Score: 101 bits (251), Expect = 1.340e-20 Identity = 168/258 (65.12%), Postives = 186/258 (72.09%), Query Frame = 1 Query: 61 MPPARTPQQWPRGPRNELHKAAHFGSADRTRALLSS-GAFDVNQGDPKGFTPLMLASMEGHSHIVKILLDNGANSSIVASDRGTALGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRF--VVTSPSGNRFVPLDMAAQYGHAGVVRELLREHGIRGCAGVTGGVRALRGAAKEQHVGVMAVLAEAGVADAGGQALVVAAE 825 MPP Q WPRGP NELH AA GSA+R ALLSS DVNQGD G TPLMLA+ GH +V+ILL++GAN SI+ AL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX V+ S G F+PLD+A + VVRELL+ GI C G + GV AL A +HVG++A+LA AGV D G AA+ Sbjct: 1 MPPPPPTQGWPRGPMNELHLAAMDGSAERALALLSSRDPIDVNQGDSAGCTPLMLATTNGHPRVVRILLNHGANMSIMDDVGSDALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNADPLLGNVLPSTGGVCFLPLDVAXXXXXSAVVRELLQRLGIERCGGESRGVDALCLAVTGRHVGIVAMLAHAGVVDQGSALAAAAAQ 258 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig95.17543.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig95.17543.1 >prot_E-siliculosus-1a_M_contig95.17543.1 ID=prot_E-siliculosus-1a_M_contig95.17543.1|Name=mRNA_E-siliculosus-1a_M_contig95.17543.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=278bp DIFLLLLDRCQLPCNHTRFSMPPARTPQQWPRGPRNELHKAAHFGSADRTback to top mRNA from alignment at E-siliculosus-1a_M_contig95:665240..666700- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig95.17543.1 ID=mRNA_E-siliculosus-1a_M_contig95.17543.1|Name=mRNA_E-siliculosus-1a_M_contig95.17543.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1461bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:665240..666700- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:665240..666700- >mRNA_E-siliculosus-1a_M_contig95.17543.1 ID=mRNA_E-siliculosus-1a_M_contig95.17543.1|Name=mRNA_E-siliculosus-1a_M_contig95.17543.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1668bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:665240..666700- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |