mRNA_E-siliculosus-1a_M_contig95.17541.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig95.17541.1
Unique NamemRNA_E-siliculosus-1a_M_contig95.17541.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig95.17541.1 vs. uniprot
Match: D7G1Y4_ECTSI (N/a n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Y4_ECTSI)

HSP 1 Score: 473 bits (1218), Expect = 1.370e-157
Identity = 235/243 (96.71%), Postives = 236/243 (97.12%), Query Frame = 2 
Query:  500 NQILGWKLLTTFRVIFVMGGPASGKGTICAEVVKRANAVHVSSGDLLRDEVQRQTPLGLQVAERMKEGRLVDASTVLALLEKFLTRHPGKHVLLDGFPRSLDNARDWARLFGPPEACIRINCPDEVMASRIVERGKGSGRADDHAEAAQVRIDTYHQQSSGPSRYFESIGLKCVDLDGTLSVRENTQYLLNLPMLSSICYRHVHEARSKPNAPPSEKPERSFDPAVRESGAPQLGVRSPIPPT 1228
            + ILGWKLLTTFRVIFVMGGPASGKGTICAEVVKRANAVHVSSGDLLRDEVQRQTPLGLQVAERMKEGRLVDASTVLALLEKFLT HPGKHVLLDGFPRSLDNARDWARLFGPPEACIRINCPDEVMASRIVERGKGSGRADDHA AAQVRIDTYHQQSSGPSRYFESIGLKCVDLDGTLSVRENTQYLLNLPMLSSICYRHVHEARSKPNAPPSEKP R FDPAVRESGA QLGV SPIPPT
Sbjct:  237 HTILGWKLLTTFRVIFVMGGPASGKGTICAEVVKRANAVHVSSGDLLRDEVQRQTPLGLQVAERMKEGRLVDASTVLALLEKFLTLHPGKHVLLDGFPRSLDNARDWARLFGPPEACIRINCPDEVMASRIVERGKGSGRADDHAGAAQVRIDTYHQQSSGPSRYFESIGLKCVDLDGTLSVRENTQYLLNLPMLSSICYRHVHEARSKPNAPPSEKPGRYFDPAVRESGASQLGVGSPIPPT 479
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BLAST of mRNA_E-siliculosus-1a_M_contig95.17541.1 vs. uniprot
Match: A0A7S1YIY5_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YIY5_9STRA)

HSP 1 Score: 163 bits (412), Expect = 2.370e-42
Identity = 85/209 (40.67%), Postives = 125/209 (59.81%), Query Frame = 2 
Query:  500 NQILGWKLLTTFRVIFVMGGPASGKGTICAEVVKRANAVHVSSGDLLRDEVQRQTPLGLQVAERMKEGRLVDASTVLALLEKFLTRHPGKHVLLDGFPRSLDNARDWARLFGPPEACIRINCPDEVMASRIVERGKGSGRADDHAEAAQVRIDTYHQQSSGPSRYFESIGLKCVDLDGTLSVRENTQYLLNLPMLSSICYRHVHEARSK 1126
            N+ILG       R++ V+GGP SGKG +   + +  + VH+SSGDLLRDEV++ TPLG +VA+ M+ G LV ++ ++ L+ + +  HPGK VLLDGFPRSL+NA D   + G PE  + ++C D ++  RI+ RGK   RADD+ E A +R+ TYH+       +    G+  V+LD + S       LL +  L     +H   +RSK
Sbjct:    9 NEILGGS---PARIVLVVGGPGSGKGLLSKRLEEECSVVHLSSGDLLRDEVRKGTPLGQEVAQIMQRGELVSSAIIVTLIRRRMRDHPGKRVLLDGFPRSLENAHDLMEICGKPELALHLSCDDTILMERILRRGKEGNRADDNVETALLRLRTYHKYHHTQMEWLREQGVPVVNLDCSGSPENVWHQLLAIGRLMRPAAQH---SRSK 211
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BLAST of mRNA_E-siliculosus-1a_M_contig95.17541.1 vs. uniprot
Match: A0A7S2RDR3_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RDR3_9STRA)

HSP 1 Score: 169 bits (427), Expect = 2.450e-42
Identity = 82/190 (43.16%), Postives = 119/190 (62.63%), Query Frame = 2 
Query:  515 WKLLTTFRVIFVMGGPASGKGTICAEVVKRANAVHVSSGDLLRDEVQRQTPLGLQVAERMKEGRLVDASTVLALLEKFLTRHPGKHVLLDGFPRSLDNARDWARLFGPPEACIRINCPDEVMASRIVERGK----GSGRADDHAEAAQVRIDTYHQQSSGPSRYFESIGLKCVDLDGTLSVRENTQYLLN 1072
            W+L + FR I+++GGPA GKGT+CA + + A   H+S G++LR+EVQ QTPLG ++   +  G LV+ + VLALL   +  HPG  VLLDGFPRS  NA D+  + G P   + + CP + M +RI++RG+    G  R+DD+ E A+ RI+T+++Q      Y E I +  + LD T S  E  Q LL+
Sbjct:  214 WRLRSAFRTIYIVGGPACGKGTLCARIAEHAQIQHISCGEILREEVQAQTPLGKEIEAIIARGELVEPAVVLALLRVRMAEHPGCIVLLDGFPRSQQNAEDFNAMVGKPSLVVYLECPPDTMVNRIIKRGEQSAPGEKRSDDNIETARNRIETFNKQGKPTLEYLEKIDIPVLHLDATKSPDEVWQQLLD 403
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BLAST of mRNA_E-siliculosus-1a_M_contig95.17541.1 vs. uniprot
Match: A0A7S4I305_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I305_9STRA)

HSP 1 Score: 164 bits (416), Expect = 1.160e-40
Identity = 78/188 (41.49%), Postives = 124/188 (65.96%), Query Frame = 2 
Query:  509 LGWKLLTTFRVIFVMGGPASGKGTICAEVVKRANAVHVSSGDLLRDEVQRQTPLGLQVAERMKEGRLVDASTVLALLEKFLTRHPGKHVLLDGFPRSLDNARDWARLFGPPEACIRINCPDEVMASRIVERGKGSGRADDHAEAAQVRIDTYHQQSSGPSRYFESIGLKCVDLDGTLSVRENTQYLLN 1072
            +GW+L + FR   V+GGP SGKGT+C  + +RA   H SSGD+LR+E++  +PL  ++   M++G LV ++T++ALL+K L R+PG  + LDGFPRS++N +D+  + G PE  + ++ PD+VM  RI++R + SGRADD+ + A  R++T+H+ +       E  G+    LDGT S  +  + LL+
Sbjct:  241 IGWRLRSGFRAFLVLGGPGSGKGTLCDIMARRAGIKHCSSGDVLREELESGSPLASEIGVTMEKGELVPSTTIIALLKKRLCRYPGSLLALDGFPRSVENYQDFDDVCGRPEFAVSVDVPDDVMIERILKRAETSGRADDNIDTATRRLETFHELTKPTLFQLERDGVPVYKLDGTRSPEDIWEELLD 428
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BLAST of mRNA_E-siliculosus-1a_M_contig95.17541.1 vs. uniprot
Match: B8CC71_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CC71_THAPS)

HSP 1 Score: 151 bits (382), Expect = 8.060e-39
Identity = 72/144 (50.00%), Postives = 96/144 (66.67%), Query Frame = 2 
Query:  539 VIFVMGGPASGKGTICAEVVKRANAVHVSSGDLLRDEVQRQTPLGLQVAERMKEGRLVDASTVLALLEKFLTRHPGKHVLLDGFPRSLDNARDWARLFGPPEACIRINCPDEVMASRIVERGKGSGRADDHAEAAQVRIDTYHQ 970
            +I V+GGP SGKG +   +VK    VH+SSGDLLR+EVQ  + LG QV E MK G LV ++ ++AL++K +  HPGK +LLDGFPRS +NARD   L G PE  + ++C D ++  RI+ RGK   RADD+   A  RI  YH+
Sbjct:    1 IILVVGGPGSGKGLLSERLVKECGVVHISSGDLLREEVQAGSHLGKQVEEIMKSGGLVSSAIMVALMQKRMKDHPGKRILLDGFPRSAENARDLVTLCGKPELALHLDCDDTILIERILHRGKSGARADDNITTALQRIRNYHK 144
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig95.17541.1 vs. uniprot
Match: B8C8Q3_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C8Q3_THAPS)

HSP 1 Score: 150 bits (378), Expect = 1.230e-38
Identity = 70/143 (48.95%), Postives = 100/143 (69.93%), Query Frame = 2 
Query:  539 VIFVMGGPASGKGTICAEVVKRANAVHVSSGDLLRDEVQRQTPLGLQVAERMKEGRLVDASTVLALLEKFLTRHPGKHVLLDGFPRSLDNARDWARLFGPPEACIRINCPDEVMASRIVERGKGSGRADDHAEAAQVRIDTYH 967
            V+ V+GGP SGKG +C  + K   AVH+S G++LR+EV+ +TPLG++VAE M+ G LV ++ V AL+ + + +HPG+ +LLDGFPRSL+NARD+  L GPPE  + ++C D V+  RI+ R   S RADD+   A  R+  YH
Sbjct:    1 VVLVVGGPGSGKGALCERLEKECGAVHLSCGEMLREEVEARTPLGIEVAEIMERGELVSSAVVTALMRRRMRQHPGRRILLDGFPRSLENARDFVELCGPPELALHLDCDDCVLLERILARV--SVRADDNIHTAIQRLKNYH 141
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BLAST of mRNA_E-siliculosus-1a_M_contig95.17541.1 vs. uniprot
Match: A0A1Z5JJ07_FISSO (Adenylate kinase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JJ07_FISSO)

HSP 1 Score: 155 bits (391), Expect = 2.330e-38
Identity = 76/167 (45.51%), Postives = 107/167 (64.07%), Query Frame = 2 
Query:  536 RVIFVMGGPASGKGTICAEVVKRANAVHVSSGDLLRDEVQRQTPLGLQVAERMKEGRLVDASTVLALLEKFLTRHPGKHVLLDGFPRSLDNARDWARLFGPPEACIRINCPDEVMASRIVERGKGS--GRADDHAEAAQVRIDTYHQQSSGPSRYFESIGLKCVDLD 1030
            R+I V+GGP SGKG +C+ +      VH+SSGDLLR+EV+RQ+PLG +V + M  G LV ++ ++ L++K +  H GK VLLDGFPRS++NARD  RL G PE  + ++C D VM  RI+ERG  S   R DD+ + A  RI T+H+       +     +  V+LD
Sbjct:  111 RIIIVVGGPGSGKGLLCSRLAAECGVVHLSSGDLLRNEVERQSPLGREVKDIMARGELVSSAIIVTLMKKHMGAHSGKRVLLDGFPRSVENARDLTRLCGVPELALHLDCEDTVMLERIMERGSASVVRRQDDNFQTAIRRIRTFHKYHKATMEWLHEQHVPVVNLD 277
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig95.17541.1 vs. uniprot
Match: A0A7S4R1Y4_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R1Y4_9STRA)

HSP 1 Score: 152 bits (383), Expect = 7.030e-38
Identity = 73/148 (49.32%), Postives = 98/148 (66.22%), Query Frame = 2 
Query:  536 RVIFVMGGPASGKGTICAEVVKRANAVHVSSGDLLRDEVQRQTPLGLQVAERMKEGRLVDASTVLALLEKFLTRHPGKHVLLDGFPRSLDNARDWARLFGPPEACIRINCPDEVMASRIVERGKGSG---RADDHAEAAQVRIDTYHQ 970
            R+I V+GGP SGKG +   +VK    +H+SSGDLLRDEV + T LG QV E MK G LV +  ++AL++K + +HPGK +LLDGFPRS +NA+D   L G PE  + ++C D ++  RI+ RG  SG   RADD+   A  RI  YH+
Sbjct:   56 RIILVVGGPGSGKGLLSERLVKECGVIHISSGDLLRDEVAKGTTLGKQVDEIMKSGGLVSSGIMVALMQKKMKKHPGKRILLDGFPRSTENAQDLVTLCGKPELALHLDCDDTILIERILNRGLSSGSSARADDNIHTALTRIRNYHK 203
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BLAST of mRNA_E-siliculosus-1a_M_contig95.17541.1 vs. uniprot
Match: A0A0M0JZG9_9EUKA (Adenylate kinase 1 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JZG9_9EUKA)

HSP 1 Score: 148 bits (374), Expect = 1.720e-37
Identity = 72/165 (43.64%), Postives = 99/165 (60.00%), Query Frame = 2 
Query:  536 RVIFVMGGPASGKGTICAEVVKRANAVHVSSGDLLRDEVQRQTPLGLQVAERMKEGRLVDASTVLALLEKFLTRHPGKHVLLDGFPRSLDNARDWARLFGPPEACIRINCPDEVMASRIVERGKGSGRADDHAEAAQVRIDTYHQQSSGPSRYFESIGLKCVDLD 1030
            R I ++GGP SGKG +C  +V      HVS GD+LR EVQ  TPLG +V+  M+ G LV +  ++ LL + +   PGK +LLDGFPRS  NA+D+    G PE  + + C DE M  RI+ RG+   RADD+ E A  R+  YH  S+    + E+ G+  V+LD
Sbjct:    9 RCILIVGGPGSGKGRLCERLVAHCGVSHVSCGDMLRQEVQADTPLGREVSGIMQRGELVSSDLIVTLLRRRMRAFPGKRLLLDGFPRSEQNAKDFESQCGVPELALHLKCTDEKMVERILRRGQLENRADDNPETAARRLRVYHDSSAPTLAWLEARGVPIVELD 173
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig95.17541.1 vs. uniprot
Match: A0A7S0KAC2_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0KAC2_9STRA)

HSP 1 Score: 152 bits (384), Expect = 4.570e-37
Identity = 70/169 (41.42%), Postives = 110/169 (65.09%), Query Frame = 2 
Query:  536 RVIFVMGGPASGKGTICAEVVKRANAVHVSSGDLLRDEVQRQTPLGLQVAERMKEGRLVDASTVLALLEKFLTRHPGKHVLLDGFPRSLDNARDWARLFGPPEACIRINCPDEVMASRIVERGK----GSGRADDHAEAAQVRIDTYHQQSSGPSRYFESIGLKCVDLD 1030
            R++ V+GGP SGKG +C  + +  NAVH+SSG++LR+E+++ TPLG++V + ++ G LV ++ + AL+ + +  +PG+ VLLDGFPRSL+NARD+A L G PE  + +NC D ++  RI+ R K      GR+DD+ E A  R+  YH+       +     +  V+LD
Sbjct:  158 RIVLVVGGPGSGKGILCDRMAQECNAVHLSSGEMLREEIKKGTPLGMEVKDIIERGELVSSALMTALIRRRMRDYPGRRVLLDGFPRSLENARDFADLIGKPELALHLNCDDTILMERILMRAKEQSENGGRSDDNIETALRRLRNYHKAQKPTMDWLREQHIPIVNLD 326
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig95.17541.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1Y4_ECTSI1.370e-15796.71N/a n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Y4_ECT... [more]
A0A7S1YIY5_9STRA2.370e-4240.67Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S2RDR3_9STRA2.450e-4243.16Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A7S4I305_9STRA1.160e-4041.49Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
B8CC71_THAPS8.060e-3950.00Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
B8C8Q3_THAPS1.230e-3848.95Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A1Z5JJ07_FISSO2.330e-3845.51Adenylate kinase n=2 Tax=Fistulifera solaris TaxID... [more]
A0A7S4R1Y4_9STRA7.030e-3849.32Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A0M0JZG9_9EUKA1.720e-3743.64Adenylate kinase 1 n=1 Tax=Chrysochromulina tobini... [more]
A0A7S0KAC2_9STRA4.570e-3741.42Hypothetical protein n=1 Tax=Leptocylindrus aporus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig95contigE-siliculosus-1a_M_contig95:644848..649065 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size726
Model size2109
Exons5
Ec32 orthologEc-07_003680.1
Ec32 ortholog descriptionAdenylate kinase/UMP-CMP kinase
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03036,ko04131,ko04147
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.F
EC2.1.1.43,2.7.4.14,2.7.4.3
EggNOG OGsCOG0563@1,COG5126@1,KOG0027@2759,KOG3079@2759
EggNOG free text desc.cytidylate kinase activity
KEGG ModuleM00049,M00052
KEGG Pathwayko00230,ko00240,ko00310,ko00730,ko00983,ko01100,ko01110,ko01130,ko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map00230,map00240,map00310,map00730,map00983,map01100,map01110,map01130,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
KEGG ReactionR00127,R00158,R00512,R01547,R01665,R03875,R03938,R04866,R04867,R11319,R11891,R11892
KEGG koko:K00939,ko:K02183,ko:K11423,ko:K13800
KEGG rclassRC00002,RC00003,RC00060,RC00181,RC00496
Seed eggNOG ortholog2880.D7G1Y4
Seed ortholog evalue1.6e-121
Seed ortholog score442.2
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936524.9332647-UTR-E-siliculosus-1a_M_contig95:644847..6456801622936524.9332647-UTR-E-siliculosus-1a_M_contig95:644847..645680Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 644848..645680 -
1696251116.5823877-UTR-E-siliculosus-1a_M_contig95:644847..6456801696251116.5823877-UTR-E-siliculosus-1a_M_contig95:644847..645680Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 644848..645680 -
1622936525.048258-UTR-E-siliculosus-1a_M_contig95:648515..6490651622936525.048258-UTR-E-siliculosus-1a_M_contig95:648515..649065Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 648516..649065 -
1696251116.660837-UTR-E-siliculosus-1a_M_contig95:648515..6490651696251116.660837-UTR-E-siliculosus-1a_M_contig95:648515..649065Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 648516..649065 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936524.959446-CDS-E-siliculosus-1a_M_contig95:645680..6459751622936524.959446-CDS-E-siliculosus-1a_M_contig95:645680..645975Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 645681..645975 -
1696251116.5993702-CDS-E-siliculosus-1a_M_contig95:645680..6459751696251116.5993702-CDS-E-siliculosus-1a_M_contig95:645680..645975Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 645681..645975 -
1622936524.9745948-CDS-E-siliculosus-1a_M_contig95:646410..6465361622936524.9745948-CDS-E-siliculosus-1a_M_contig95:646410..646536Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 646411..646536 -
1696251116.6106577-CDS-E-siliculosus-1a_M_contig95:646410..6465361696251116.6106577-CDS-E-siliculosus-1a_M_contig95:646410..646536Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 646411..646536 -
1622936524.9967253-CDS-E-siliculosus-1a_M_contig95:647087..6472121622936524.9967253-CDS-E-siliculosus-1a_M_contig95:647087..647212Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 647088..647212 -
1696251116.6199818-CDS-E-siliculosus-1a_M_contig95:647087..6472121696251116.6199818-CDS-E-siliculosus-1a_M_contig95:647087..647212Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 647088..647212 -
1622936525.0143719-CDS-E-siliculosus-1a_M_contig95:647834..6478851622936525.0143719-CDS-E-siliculosus-1a_M_contig95:647834..647885Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 647835..647885 -
1696251116.6325345-CDS-E-siliculosus-1a_M_contig95:647834..6478851696251116.6325345-CDS-E-siliculosus-1a_M_contig95:647834..647885Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 647835..647885 -
1622936525.03091-CDS-E-siliculosus-1a_M_contig95:648386..6485151622936525.03091-CDS-E-siliculosus-1a_M_contig95:648386..648515Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 648387..648515 -
1696251116.6485767-CDS-E-siliculosus-1a_M_contig95:648386..6485151696251116.6485767-CDS-E-siliculosus-1a_M_contig95:648386..648515Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 648387..648515 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig95.17541.1prot_E-siliculosus-1a_M_contig95.17541.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig95 645681..648515 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig95.17541.1

>prot_E-siliculosus-1a_M_contig95.17541.1 ID=prot_E-siliculosus-1a_M_contig95.17541.1|Name=mRNA_E-siliculosus-1a_M_contig95.17541.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=242bp
MGGPASGKGTICAEVVKRANAVHVSSGDLLRDEVQRQTPLGLQVAERMKE
GRLVDASTVLALLEKFLTRHPGKHVLLDGFPRSLDNARDWARLFGPPEAC
IRINCPDEVMASRIVERGKGSGRADDHAEAAQVRIDTYHQQSSGPSRYFE
SIGLKCVDLDGTLSVRENTQYLLNLPMLSSICYRHVHEARSKPNAPPSEK
PERSFDPAVRESGAPQLGVRSPIPPTPAPAAAAAAAPGPSM*
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mRNA from alignment at E-siliculosus-1a_M_contig95:644848..649065-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig95.17541.1 ID=mRNA_E-siliculosus-1a_M_contig95.17541.1|Name=mRNA_E-siliculosus-1a_M_contig95.17541.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=4218bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:644848..649065- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CTGGGTTGGTGTTTTTTTTTTTTTTTACAGAGAGAGGCCAAGGGGGGTAC
TTGTACATGTTTTTCGAACCATGTGGTTGGTTCGGCCCGTACTCGGCAGC
AACACATACACGTGGGGACACTCGCATGTTGGATGCGGCTGTACCAAGTC
ACACATTTTGTTGTGATATGGTCGACCAGTCTCTTGAACAAGCCAGACCC
TGAGGTAGTTTCGTGGGAGCGAGCGACTTGTGACGGTGATCAACATTACG
CTATCAAAGAACCAGGTCCCTTCGATTTTGACGCTTCACTCGACCGGCCA
GATTGCCGATTTATCATTTTAGACCCTTCCTGGGTGGAATCCTCTCTCTC
TCTCACACACACACACACAGACACACACACCTATTTTCCCCAGCGATCTC
CGTCAAACCAAACCACCCGAATATAACCCATCCTGGCTTCGATATTTTGT
CGCGATCTGTGTACGGATACATACATGCATACATGCCGCCGCGCCGACCA
ATCAGATCCTGGGGTGGAAGCTCCTGACGACCTTCCGCGTGATCTTCGTC
ATGGGTGGGCCGGCCTCCGGCAAGGGAACCATCTGCGCGGAGGTGGTGAA
GCGGGCCAACGCCGTCCACGTCAGCTCCGGCGACCTCCTGAGGGACGAGG
TTCAGCGGCAAACACCTCTTGGTCTGCAGGTCAGCTAACAAAAACGAGGG
GAAAGAGAGAGAAAGGAGATATTTATACAGCAGTAGGGGGGCGCATCGAG
TTTTGACGTGCCGCCCTCTTCCGCCGCCCCCCCCCGGGCGCCCACTTTTT
CCCGTACGAATGATGGGGACATCACGTGACAAATGCCTTAGCTGAGGGAA
GGAGTAGGTGATGCATGCAGCAAAAAGCGGTTCGTGCTGGCTGTGCTGCG
TCTCCGATGGCTTCCTGAGGTCGGGGACAAATCAAATACCCGAAATGCAC
ACTTTTGGCAGGCCTCGCGAAAGCCTCGGTATCAATCAAGCCTGCATTGG
ACGTTTTTGGTGCACCCCCAATGTGCCCCTCCCCCCCAAAAAATGGGTGG
TGGTGTCTTGTTTCTTGTGCGGTCTTTGTTGTTTCTGGGTTGAAAGTGTC
TGTCCAACTTCTGCTTCTGCTGCTGCTGCTGCTGCTGCTCCTGTTGCTAT
TGCTGTTGTTGTTATCGCTGTTTGGAGCAGGTGGCGGAGAGGATGAAAGA
GGGCCGCCTCGTCGATGCCAGTACTGTTTTGGTGAGTCGCACGATGTACT
ACTGCTGTACTACCTTAACTTTTAACAAAGAGAGAAGTAGAAATTCTGCC
GTCCTGTCCTTCTACCTTTACTGGAGATGACGTGTACTCTTGCTGCTGCA
GCTGCTGCTGTTGTTGGCAACGTCGCAGAAAATGGCGGGTCGGCTTTGGT
GATTTTCAGATTGTCCTGCGAGTGTCGTGGTAGACTGCTGTCGCGCTTGC
GAATCACCCCTGCGGGTTATCTTTGTGTTGTGCTGCACGGCAAGGTTCCT
GGGGGTCGAAACAGCAGAAATCGCACGCGGCCCTCCTTTGCAATCTGGTT
TCCGTAGCCGGCCGTGTCGGTACGGAAGAAGACATGCCGGGTATGGGTCA
ATCCAGTCGAGGAAAACGGCACCGCGACGAGAAGAGCAGGCCTACTTTGT
GCTCGACCCTACTCTTGTGTGCTCGACCCGGCTCGTTATTCTGGAACTGA
CTCTTTTTATCCTCGACGCGACTCGGTTGTGCTGGACCCTACTCTGTGTG
CCCGACCTGACTCTTTATGCTCGTCTCGACTCTGTGTGTGCTCGACCCCG
ACTCTTTGTGTTGACGTGACCCTGTCGTGTCCGCTTGACTGTTTGTATGA
TAGGCGCTCCTGGAGAAGTTCTTGACCCGTCACCCCGGCAAGCATGTGCT
GCTGGACGGATTCCCTCGGTCTTTGGACAACGCCAGGGATTGGGCGAGGC
TTTTCGGCCCTCCAGAGGCGTGCATCAGGTGCGTTTTGCGGCACCAGAAG
TAGACAAGTATACTGTACAGCAGTGTCACGGGGCGGATGCGTACTAGAAG
TACTTGGGAAAGGCTACTTTTTTGCATGTGAGAGCGATGACAAGGCTACC
CTTTAGGAAGTCAAGAGTCTCGTCGAGCATGACATGAATCACACCCTTTC
CCCCCGCCCTCTTTTCGTCACGTATCGCGTATCCGACGCAACAATCGCTT
GGGACACACGCTGGGCGGTTTTGTACCCCCCCGTTTTCGTTTTCGGTTCC
CGCGTGTGTTTGCCATCTAGTTCTTGTGCTATTCAGCGTAGGATCGCGCT
TGCTTCCCGGATGAGTTGCCGTGAGAGACACGACGGCGGTGGCCACCGCC
TCTAATCCTGACCCCTATTTAGCGCTTGCTTCTCGAAATCGTTCGCGAAT
GTCTGGTGGTTGATTTTTGCTGACCCCCCCTTTTTTTTTCGCGCGCGTGT
GTGCGTGTTTTTCCTTCTTCTGCGCTATTTGGTGGTGGTTGTGCTGCGTG
TGCGTTGTGCGCGGACGCCTTTGCCGCAGGATTAATTGCCCCGACGAGGT
GATGGCGAGCCGTATCGTGGAGAGGGGTAAGGGGTCGGGGAGAGCGGACG
ATCACGCGGAGGCGGCCCAAGTGCGAATAGACACCTACCACCAGCAGAGC
TCCGGGTAAGCGATCGCTGTCGTTTGTGTGACTGCCTTGCATGTCTGTTG
GGGAACGTTGAAGTTTTTCGGTGCCTTTGGTAATGGCCTTCGCGCTGCGT
TAGAATGCCTCCCAGCGCAGAGCTAGCTGGCGGTGTTGTTCTCATTCGCC
ACTACGTTTGGTTCTATTTTCTCTCACGTACCGCGTTGGCCGCTCTTTTC
TACCACTTGTTTCGGGCATGACTCGCCGCCGCCGCTGATGCCGGGGCTGC
GGGAGGTGTGTTGGAGTTTTTCGCCGTCGAATCAAATCACCCACGTGACG
CGAGTCACGCTACGCCGTTTCATTTCTGGGTTTCTTCCCGGTTCCCCCAT
CGCACATGGCATGCGTGTCCTTGTTCTTCTGCGTTCGTTCGACTTACCTT
GCCCGTTTCTTCTTGCATCGTCCGTGCTCTTCTTCGCCAGGCCGTCGCGC
TACTTCGAATCGATCGGGCTAAAGTGCGTCGACCTTGACGGCACCCTATC
GGTGAGGGAGAACACCCAGTACCTCCTGAACCTGCCGATGCTCAGCTCGA
TCTGCTACCGGCACGTCCACGAGGCTCGCTCCAAGCCCAACGCGCCGCCG
TCAGAGAAGCCGGAGAGGTCTTTTGACCCCGCCGTGAGAGAGTCGGGGGC
CCCGCAGTTGGGTGTGAGGTCACCGATACCCCCCACCCCGGCGCCCGCCG
CCGCCGCCGCCGCCGCACCCGGACCAAGCATGTAGAGAAGAAAAAAAAAG
CTTGAGAAGAAGTAGTCCTTGTGATGAGAGGTGGGTGGGTTGGTGGTGGG
TGCAGCGATGATGACAGGCCGGCGTCCCGTGTTGAGATTCGACGCCGCCG
TCCCTCACGCATCTCTTCCCCCCGGGCGGGACCGGCCTACCAAAAGCTCT
GTAGAAAAAAATTGGTGTGGTGTTTTGGGTGTTGTGGCGGTATGGTAGTG
GTGGTGATGGTGGTGATGGTGTGGGTTGCCGGCGTGGGTCGTTCGTAGTG
GTCGCCGTGGAATATGATGCATCGTCGTGGATTTCGAGGAGGACTCCAGT
CGTTTCAGGCCGAATGGGGGGGCGGGGGGAGGGTGTGTTAATGTCTCGTG
GTGTGTGTGGTGCGTGTGCGTCTTGTCTTGTCACGTCCTGCTTGTTACAT
TACACCCCGTGAGAACTCGGCTGTGTTTTTTTTTTTTTGTTATCGTTGTT
GAAAAAGAGAGCCGCGGACGGATGGATCGGACACGGACAGATGGGAGGGA
CATGGAACGGGAGTTTGTGATATCATCCGGTTGCGTCGTTCTTCGATCAG
CTCGGACGACCGATCCTGCGGGCTACAAGAAATACGCCAAGCCTCAGTTG
TTTTAGCGACAGGGGGTATCGGTGCTTTTGATTTAGGCGCTCAACGCTTT
GAAATAGCCGTTGCAATACGAACAGGTGACTCCGTTGGGAAGGGTGACGA
TATTAGATTTTGCACATGGGTGTACGTGTGTGCGGGGGGGCTCGCTGGGC
TCCCCGGCGACTATTCCGTGAACGAACGAAGGCCGAACTTCTCAAGGACA
CTACAAAAATTTTGACGT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:644848..649065-

>mRNA_E-siliculosus-1a_M_contig95.17541.1 ID=mRNA_E-siliculosus-1a_M_contig95.17541.1|Name=mRNA_E-siliculosus-1a_M_contig95.17541.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1452bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:644848..649065- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGGTGGGCCGGCCTCCGGCAAGGGAACCATCTGCGCGGAGGTGGTGAA
GCGGGCCAACGCCGTCCACGTCAGCTCCGGCGACCTCCTGAGGGACGAGG
TTCAGCGGCAAACACCTCTTGGTCTGCAGATGGGTGGGCCGGCCTCCGGC
AAGGGAACCATCTGCGCGGAGGTGGTGAAGCGGGCCAACGCCGTCCACGT
CAGCTCCGGCGACCTCCTGAGGGACGAGGTTCAGCGGCAAACACCTCTTG
GTCTGCAGGTGGCGGAGAGGATGAAAGAGGGCCGCCTCGTCGATGCCAGT
ACTGTTTTGGTGGCGGAGAGGATGAAAGAGGGCCGCCTCGTCGATGCCAG
TACTGTTTTGGCGCTCCTGGAGAAGTTCTTGACCCGTCACCCCGGCAAGC
ATGTGCTGCTGGACGGATTCCCTCGGTCTTTGGACAACGCCAGGGATTGG
GCGAGGCTTTTCGGCCCTCCAGAGGCGTGCATCAGGCGCTCCTGGAGAAG
TTCTTGACCCGTCACCCCGGCAAGCATGTGCTGCTGGACGGATTCCCTCG
GTCTTTGGACAACGCCAGGGATTGGGCGAGGCTTTTCGGCCCTCCAGAGG
CGTGCATCAGGATTAATTGCCCCGACGAGGTGATGGCGAGCCGTATCGTG
GAGAGGGGTAAGGGGTCGGGGAGAGCGGACGATCACGCGGAGGCGGCCCA
AGTGCGAATAGACACCTACCACCAGCAGAGCTCCGGGATTAATTGCCCCG
ACGAGGTGATGGCGAGCCGTATCGTGGAGAGGGGTAAGGGGTCGGGGAGA
GCGGACGATCACGCGGAGGCGGCCCAAGTGCGAATAGACACCTACCACCA
GCAGAGCTCCGGGCCGTCGCGCTACTTCGAATCGATCGGGCTAAAGTGCG
TCGACCTTGACGGCACCCTATCGGTGAGGGAGAACACCCAGTACCTCCTG
AACCTGCCGATGCTCAGCTCGATCTGCTACCGGCACGTCCACGAGGCTCG
CTCCAAGCCCAACGCGCCGCCGTCAGAGAAGCCGGAGAGGTCTTTTGACC
CCGCCGTGAGAGAGTCGGGGGCCCCGCAGTTGGGTGTGAGGTCACCGATA
CCCCCCACCCCGGCGCCCGCCGCCGCCGCCGCCGCCGCACCCGGACCAAG
CATGTAGGCCGTCGCGCTACTTCGAATCGATCGGGCTAAAGTGCGTCGAC
CTTGACGGCACCCTATCGGTGAGGGAGAACACCCAGTACCTCCTGAACCT
GCCGATGCTCAGCTCGATCTGCTACCGGCACGTCCACGAGGCTCGCTCCA
AGCCCAACGCGCCGCCGTCAGAGAAGCCGGAGAGGTCTTTTGACCCCGCC
GTGAGAGAGTCGGGGGCCCCGCAGTTGGGTGTGAGGTCACCGATACCCCC
CACCCCGGCGCCCGCCGCCGCCGCCGCCGCCGCACCCGGACCAAGCATGT
AG
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