mRNA_E-siliculosus-1a_M_contig95.17539.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig95.17539.1 vs. uniprot
Match: D7G1Y2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Y2_ECTSI) HSP 1 Score: 562 bits (1449), Expect = 2.810e-192 Identity = 286/297 (96.30%), Postives = 289/297 (97.31%), Query Frame = 3 Query: 489 MVVGGEERKALELETSDKVPRGPAGAIKLTYLELNSWMWEVNGINILVDPVFGTVDFGVPLLVQANKQVLSDGERAMRELAAVTDFLVISQGFDDHCHPATIKALSGLLKPSVRLVAPPSAKAVLEEHFPESRITYILPGQSTVLSAGGRAVEIKATTGAVLGPPWQQAENGVIVRPVAADGDDKDPEGGILYFEPHLFFDESELSKLHADVVITPVVQQKVGPYPLVCGGAKALDLASALSASKLVTMANAQVDFSGPLAKVVLEEGTLEGFLEMAKSTEVEVVVPQPAKTASVWP 1379
MVVGG ERKALELETSDKVPRGPAGAIKLTYLELNSWMWEVNGINILVDPVFGTVDFGVPLLVQANKQVLSDGERAMRELAAVTDFLVISQGFDDHCHP TIK LSGLLKPSVRLVAPPSAKAVLEEHFP SRITYILPGQSTVLSAGGRAVEIKATTGA+LGPPWQQAENGVIVRPVAADGD+KDPEGG LYFEPHLFFDESELSKLHADVVITPVVQQ VGPYPLVCGGAKALDLAS LSASKLVTMANAQVDFSGPLAKVV+EEGTLEGFLEMAK TEVEVVVPQPAKTASVWP
Sbjct: 1 MVVGGGERKALELETSDKVPRGPAGAIKLTYLELNSWMWEVNGINILVDPVFGTVDFGVPLLVQANKQVLSDGERAMRELAAVTDFLVISQGFDDHCHPPTIKGLSGLLKPSVRLVAPPSAKAVLEEHFPASRITYILPGQSTVLSAGGRAVEIKATTGAILGPPWQQAENGVIVRPVAADGDEKDPEGGSLYFEPHLFFDESELSKLHADVVITPVVQQNVGPYPLVCGGAKALDLASTLSASKLVTMANAQVDFSGPLAKVVVEEGTLEGFLEMAKRTEVEVVVPQPAKTASVWP 297
BLAST of mRNA_E-siliculosus-1a_M_contig95.17539.1 vs. uniprot
Match: A0A067JZH1_JATCU (Uncharacterized protein n=1 Tax=Jatropha curcas TaxID=180498 RepID=A0A067JZH1_JATCU) HSP 1 Score: 204 bits (519), Expect = 4.550e-55 Identity = 121/274 (44.16%), Postives = 174/274 (63.50%), Query Frame = 3 Query: 570 KLTYLELNSWMWEVNGINILVDPVF-GTVDFGVPLLVQANKQVLSDGERAMRELAAVTDFLVISQGFDDHCHPATIKALSGLLKPSVRLVAPPSAKAVLEEHFPESRITYILPGQSTVLSA-GGRAVEIKATTGAVLGPPWQQAENGVIVRPVAADGDDKDPEGGI-LYFEPHLFFDESELSKLHADVVITPVVQQKVGPYPLVCGGAKALDLASALSASKLVTMANAQVDFSGPLAKVVLEEGTLEGFLEM-AKST-EVEVVVPQPAKTASVW 1376
KLTYLE NSW+WEV G+ ILVDP+ G +DFG+P L A K+ L + + + L V D L+I+Q DDHCH T+K LS +L P++R++A P+AK +L+ F S +TY+ PGQS+ + A G V+++AT G VLGPPWQ+ ENG +V P+G + LY+EPH +++S L K HAD+VITPV++Q + + LV G A++LA L A +V M N +D G LA ++ EGT+E F E+ AK + +V+ P+P V+
Sbjct: 79 KLTYLEGNSWLWEVGGVKILVDPILVGNLDFGIPWLYDAAKKFLKNFQ--LSNLPEV-DCLLITQSLDDHCHLKTLKPLSEIL-PNLRVIATPNAKPLLDPRF--SNVTYLEPGQSSEIEARDGSKVKVQATAGPVLGPPWQRPENGYLVN---------SPQGQLTLYYEPHCVYNKSFLEKEHADIVITPVIKQLLPKFTLVSGQEDAVELAKLLRAKFIVPMKNGDLDAKGFLASIIKAEGTIESFKELLAKELPDAQVLEPKPGVPLEVY 337
BLAST of mRNA_E-siliculosus-1a_M_contig95.17539.1 vs. uniprot
Match: A0A2P2IUU2_RHIMU (Uncharacterized protein n=2 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2IUU2_RHIMU) HSP 1 Score: 204 bits (518), Expect = 5.130e-55 Identity = 127/298 (42.62%), Postives = 179/298 (60.07%), Query Frame = 3 Query: 513 KALELETSDKVPRGPAGA----IKLTYLELNSWMWEVNGINILVDPVF-GTVDFGVPLLVQANKQVLSDGERAMRELAAVTDFLVISQGFDDHCHPATIKALSGLLKPSVRLVAPPSAKAVLEEHFPESRITYILPGQSTVLSA-GGRAVEIKATTGAVLGPPWQQAENGVIVRPVAADGDDKDPEGG-ILYFEPHLFFDESELSKLHADVVITPVVQQKVGPYPLVCGGAKALDLASALSASKLVTMANAQVDFSGPLAKVVLEEGTLEGFLE-MAKST-EVEVVVPQPAKTASVWP 1379
KA+ S++ G + A KLTYLE NSW+WEV G+NILVDP+ G +DFG+P L A K+VL + + + +L V D L+I+Q DDHCH T+K LS P++R++A P+AK +L+ F S +TY+ P QS+ + A G +KAT G VLGPPWQ+ ENG +V P+G +LY+EPH +++ + K +AD+VITPV++Q + + LV G A+ LA L A +V M N +D G LA ++ EGT+E F E MAK E +V+VP P V P
Sbjct: 50 KAVSAVVSEETAVGSSSAGTDVFKLTYLEGNSWLWEVGGVNILVDPILVGNLDFGIPWLYDAAKKVLKNFQ--LTDLPEV-DCLLITQSLDDHCHLKTLKPLSEK-SPNLRVMATPNAKPLLDPLF--SNVTYVEPSQSSEIEARNGSKARVKATAGPVLGPPWQRPENGYLVS---------SPQGQLVLYYEPHCVYNKDSVEKENADIVITPVIKQLLPKFTLVSGQEDAVQLAKLLHAKYVVPMKNGDLDSKGFLASIIQTEGTIESFKELMAKELPEAQVLVPTPGVPLEVSP 332
BLAST of mRNA_E-siliculosus-1a_M_contig95.17539.1 vs. uniprot
Match: D7T986_VITVI (Uncharacterized protein n=4 Tax=Vitis TaxID=3603 RepID=D7T986_VITVI) HSP 1 Score: 202 bits (514), Expect = 2.280e-54 Identity = 119/275 (43.27%), Postives = 172/275 (62.55%), Query Frame = 3 Query: 570 KLTYLELNSWMWEVNGINILVDPVF-GTVDFGVPLLVQANKQVLSDGERAMRELAAVTDFLVISQGFDDHCHPATIKALSGLLKPSVRLVAPPSAKAVLEEHFPESRITYILPGQSTVLSAG-GRAVEIKATTGAVLGPPWQQAENGVIVRPVAADGDDKDPEGGI-LYFEPHLFFDESELSKLHADVVITPVVQQKVGPYPLVCGGAKALDLASALSASKLVTMANAQVDFSGPLAKVVLEEGTLEGFLEMAKST--EVEVVVPQPAKTASVWP 1379
KLTYLE NSW+W+V G+NILVDP+ G +DFG+P L A K+ L + + + EL V + L+I+Q FDDHCH T+K LS + P +R+++ P+A+ +L+ F S +TY+ PGQS+ + AG G V+I+AT G VLGPPWQ+ ENG +V P+G + LY+EPH +++S L K HAD+VITPV++Q + + LV G A+ LA L A +V M N +D G LA +V EGT+E F E+ + +++ P P + P
Sbjct: 76 KLTYLEGNSWLWDVGGLNILVDPILVGNLDFGIPWLYDAAKKFLKNFQ--LSELPEV-NCLLITQNFDDHCHLKTLKPLSAMY-PDLRVISTPNAREMLDPLF--SNVTYLEPGQSSNIEAGNGSKVQIQATAGPVLGPPWQRPENGYLVI---------SPQGLLRLYYEPHCVYNKSLLEKEHADIVITPVIKQLLPNFTLVSGQENAVKLAKLLHAKFIVPMKNGDLDSKGLLASIVQSEGTVESFKELLHKELPDAQILEPTPGVPLEISP 335
BLAST of mRNA_E-siliculosus-1a_M_contig95.17539.1 vs. uniprot
Match: UPI000B77346D (uncharacterized protein LOC110653857 n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=UPI000B77346D) HSP 1 Score: 202 bits (513), Expect = 2.800e-54 Identity = 122/273 (44.69%), Postives = 174/273 (63.74%), Query Frame = 3 Query: 570 KLTYLELNSWMWEVNGINILVDPVF-GTVDFGVPLLVQANKQVLSDGERAMRELAAVTDFLVISQGFDDHCHPATIKALSGLLKPSVRLVAPPSAKAVLEEHFPESRITYILPGQSTVLSAGGRA-VEIKATTGAVLGPPWQQAENGVIVRPVAADGDDKDPEGGI-LYFEPHLFFDESELSKLHADVVITPVVQQKVGPYPLVCGGAKALDLASALSASKLVTMANAQVDFSGPLAKVVLEEGTLEGFLEM-AKST-EVEVVVPQPAKTASV 1373
+LTYLE NSW+WEV G+NILVDP+ G +DFG+P L A K+VL + + +R+L V D L+I+Q DDHCH T+K LS +L P++R++A P+AK +L+ F S +TY+ PGQS+ + A + V ++AT G VLGPPWQ+ ENG +V P+ + LY+EPH +++S L K HAD+VITPV++Q + + LV G A+ LA L A +V M N +D G LA ++ EGT+E F E+ AK + +V+ P P T V
Sbjct: 76 RLTYLEGNSWLWEVGGVNILVDPILVGNLDFGIPWLYDAAKKVLKNFQ--LRDLPEV-DCLLITQSLDDHCHLKTLKPLSEML-PNLRVIATPNAKPLLDPLF--SNVTYLEPGQSSEIEASDDSKVRVQATAGPVLGPPWQRPENGYLVN---------SPQSQMTLYYEPHCAYNKSFLEKEHADIVITPVIKQLLPNFTLVYGQEDAVKLAKLLHAKFIVPMKNGDLDSKGFLASIIHAEGTVESFKELLAKELPDAQVLEPTPGVTLEV 333
BLAST of mRNA_E-siliculosus-1a_M_contig95.17539.1 vs. uniprot
Match: A0A835Z9N4_9STRA (Beta-lactamase superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9N4_9STRA) HSP 1 Score: 199 bits (507), Expect = 3.400e-54 Identity = 99/269 (36.80%), Postives = 152/269 (56.51%), Query Frame = 3 Query: 561 GAIKLTYLELNSWMWEVNGINILVDPVFGTVDFGVPLLVQANKQVLSDGERAMRELAAVTDFLVISQGFDDHCHPATIKALSGLLKPSVRLVAPPSAKAVLEEHFPESRITYILPGQSTVLSAGGRAVEIKATTGAVLGPPWQQAENGVIVRPVAADGDDKDPEGGILYFEPHLFFDESELSKLHADVVITPVVQQKVGP----YPLVCGGAKALDLASALSASKLVTMANAQVDFSGPLAKVVLEEGTLEGFLEMAKSTEVEVVVPQP 1355
G +T+ E NSW+W + G+ LVDP+F T+DFG+P +A+K+V SD +A + +VI+QG DHC T+ L+ L+KP+ R++APPSAK ++ FP+ R+TY PG VL G VE+ G+V+GPPWQ EN + RP A +GG+ Y EPH + E + + AD ++TP Q++GP Y ++ G +A++LA + A ++++ N + +G L +V G E F +A +E V QP
Sbjct: 10 GEPSVTWFEGNSWLWTIGGVTFLVDPIFDTLDFGMPYFYKADKRVFSDYRALTERMAQEAEHIVITQGLPDHCCEKTLPRLAKLMKPTARVIAPPSAKDIVSRFFPDDRVTYAKPGDKVVLKGSGGEVELAVMPGSVVGPPWQAPENAYLARPRGAT------DGGVFY-EPHCMWSEDAMRSVRADAIVTPTYGQRMGPEALHYTILNSGERAVELAKTVGARRIISYNNVDQESTGVLNLIVTRTGDAEEFARLAAKAGIEYVQVQP 271
BLAST of mRNA_E-siliculosus-1a_M_contig95.17539.1 vs. uniprot
Match: B9ST35_RICCO (Uncharacterized protein n=1 Tax=Ricinus communis TaxID=3988 RepID=B9ST35_RICCO) HSP 1 Score: 199 bits (506), Expect = 2.560e-53 Identity = 115/266 (43.23%), Postives = 167/266 (62.78%), Query Frame = 3 Query: 528 ETSDKVPRGPAGAIKLTYLELNSWMWEVNGINILVDPVF-GTVDFGVPLLVQANKQVLSDGERAMRELAAVTDFLVISQGFDDHCHPATIKALSGLLKPSVRLVAPPSAKAVLEEHFPESRITYILPGQSTVLSA-GGRAVEIKATTGAVLGPPWQQAENGVIVRPVAADGDDKDPEGGI-LYFEPHLFFDESELSKLHADVVITPVVQQKVGPYPLVCGGAKALDLASALSASKLVTMANAQVDFSGPLAKVVLEEGTLEGFLEM 1316
ET+ G AIKLTYLE NSW+WEV+GIN+LVDP+ G +DFG+P L A K+++ + + + +L V D L+I+Q DDHCH T+K LS L P++R++A P+A+ +L+ F +TY+ PG++ + G V ++AT G VLGPPWQ+ ENG +V P+G + LY+EPH +D++ L K HAD+VITPV++Q + + LV G A+ LA L A +V M N +D G LA ++ EGT+E F E+
Sbjct: 62 ETAVGSSSGTNDAIKLTYLEGNSWLWEVSGINLLVDPILVGNLDFGIPWLYDAAKKLIKNFQ--LNDLPEV-DSLLITQSLDDHCHLKTLKPLSEKL-PNIRIIATPNAQPLLDPLF--CNVTYLEPGENAEIEGKNGSKVRVQATAGPVLGPPWQRPENGYLVS---------SPQGQMTLYYEPHCVYDKNFLEKEHADIVITPVIKQLLPKFTLVYGQEDAVKLAKLLHAKFIVPMKNGDLDAKGLLASIIRSEGTIESFKEL 312
BLAST of mRNA_E-siliculosus-1a_M_contig95.17539.1 vs. uniprot
Match: A0A2C9ULI6_MANES (Uncharacterized protein n=1 Tax=Manihot esculenta TaxID=3983 RepID=A0A2C9ULI6_MANES) HSP 1 Score: 197 bits (502), Expect = 9.030e-53 Identity = 118/273 (43.22%), Postives = 172/273 (63.00%), Query Frame = 3 Query: 570 KLTYLELNSWMWEVNGINILVDPVF-GTVDFGVPLLVQANKQVLSDGERAMRELAAVTDFLVISQGFDDHCHPATIKALSGLLKPSVRLVAPPSAKAVLEEHFPESRITYILPGQSTVLSAGGRA-VEIKATTGAVLGPPWQQAENGVIVRPVAADGDDKDPEGGI-LYFEPHLFFDESELSKLHADVVITPVVQQKVGPYPLVCGGAKALDLASALSASKLVTMANAQVDFSGPLAKVVLEEGTLEGFLEM-AKST-EVEVVVPQPAKTASV 1373
+LTYLE NSW+WEV G+NILVDP+ G +DFG+P L A K+V+ + + + L + D L+I+Q DDHCH T+K LS +L P++R++A P+AK +L+ F + +TY+ PGQS+ + A G + V ++AT G VLGPPWQ+ ENG +V P+G + LY+EPH ++++ L K AD+VITPV++Q + + LV G A+ LA L A +V M N +D G LA ++ EGT+E F E+ AK E +V+ P P V
Sbjct: 76 RLTYLEGNSWLWEVGGVNILVDPILVGNLDFGIPWLYDAAKKVIKNFQ--LSNLPKL-DCLLITQSLDDHCHLKTLKPLSEIL-PNLRVIATPNAKPLLDPLF--NNVTYLEPGQSSEIEASGDSKVRVQATAGPVLGPPWQRPENGYLVN---------SPQGNMTLYYEPHCVYNKNFLEKERADIVITPVIKQLLPKFTLVYGQEDAVKLAKLLHAKFIVPMKNGDLDSKGFLASIIQAEGTVESFKELLAKELPEAQVLEPTPGVALEV 333
BLAST of mRNA_E-siliculosus-1a_M_contig95.17539.1 vs. uniprot
Match: A0A6J1HZ26_CUCMA (uncharacterized protein LOC111467532 n=3 Tax=Cucurbita TaxID=3660 RepID=A0A6J1HZ26_CUCMA) HSP 1 Score: 197 bits (502), Expect = 9.800e-53 Identity = 121/279 (43.37%), Postives = 171/279 (61.29%), Query Frame = 3 Query: 528 ETSDKVPRGPAGAIKLTYLELNSWMWEVNGINILVDPVF-GTVDFGVPLLVQANKQVLSDGERAMRELAAVTDFLVISQGFDDHCHPATIKALSGLLKPSVRLVAPPSAKAVLEEHFPESRITYILPGQSTVLSA-GGRAVEIKATTGAVLGPPWQQAENGVIVRPVAADGDDKDPEGGI-LYFEPHLFFDESELSKLHADVVITPVVQQKVGPYPLVCGGAKALDLASALSASKLVTMANAQVDFSGPLAKVVLEEGTLEGFLEMAKSTEVEVVVPQP 1355
E++D A LTYLE NSW+WEV G++ILVDPV G +DFG+ L +A+K++L + + + EL V D L+I+Q DDHCH T++ LS P+++++A P+AKA+L+ F S +TY+ GQS+V+ A G V I+AT G VLGPPWQ+ ENG +V P+G + LY+EPH ++E L K AD+VITPV++Q + + LV G A+ LA L A +V M N +D G LA +V EGT+E F E+ E VV +P
Sbjct: 61 ESADGATVSTTDAFNLTYLEGNSWLWEVGGLSILVDPVLVGNLDFGISWLYEASKKILKNFQ--LSELPEV-DCLLITQSLDDHCHLKTLRPLSEK-SPNLKVIATPNAKALLDPLF--SNVTYLECGQSSVIEAKNGSQVLIRATAGPVLGPPWQRPENGYLVI---------SPQGQLTLYYEPHCSYNEEFLGKQRADIVITPVIKQLLPNFTLVSGQEDAVQLAKLLHAKFIVPMNNGDMDSKGLLASLVSAEGTIESFKELLSKELPEAVVLEP 324
BLAST of mRNA_E-siliculosus-1a_M_contig95.17539.1 vs. uniprot
Match: A0A498HF70_MALDO (Uncharacterized protein n=2 Tax=Maleae TaxID=721813 RepID=A0A498HF70_MALDO) HSP 1 Score: 197 bits (502), Expect = 1.090e-52 Identity = 116/265 (43.77%), Postives = 166/265 (62.64%), Query Frame = 3 Query: 570 KLTYLELNSWMWEVNGINILVDPVF-GTVDFGVPLLVQANKQVLSDGERAMRELAAVTDFLVISQGFDDHCHPATIKALSGLLKPSVRLVAPPSAKAVLEEHFPESRITYILPGQSTVLSAG-GRAVEIKATTGAVLGPPWQQAENGVIVRPVAADGDDKDPEG-GILYFEPHLFFDESELSKLHADVVITPVVQQKVGPYPLVCGGAKALDLASALSASKLVTMANAQVDFSGPLAKVVLEEGTLEGFLEMAKSTEVEVVVPQP 1355
KLTYLE NSW+W+V G+ ILVDP+ G +DFG+P L A K+ L + + + ++ V D L+I+Q DDHCH T+K LS P++R++A P+AKA+L+ F S +TY+ PGQS+++ AG G V+++AT G VLGPPWQ+ ENG +V PEG LY+EPH ++ S L K A+++ITPV++Q + + LV G A+ LA L+A +V M N +D G LA +V EGT+E F E+ + V QP
Sbjct: 79 KLTYLEGNSWLWDVGGVKILVDPILVGNLDFGIPWLYDAAKKFLKNFQ--LSDIPEV-DCLLITQSLDDHCHLKTLKPLSEKY-PNLRVIATPNAKALLDPLF--SNVTYLEPGQSSIIEAGNGSTVKVQATAGPVLGPPWQRPENGYLVIY---------PEGKSTLYYEPHCVYNTSSLEKERANIIITPVIKQLLPKFTLVSGQEDAVRLAKLLNAKFIVPMTNGDLDAKGLLASLVSAEGTIESFKELLSKELPDAQVLQP 328 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig95.17539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig95.17539.1 >prot_E-siliculosus-1a_M_contig95.17539.1 ID=prot_E-siliculosus-1a_M_contig95.17539.1|Name=mRNA_E-siliculosus-1a_M_contig95.17539.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=375bp MYTSRERQSMKTTAAALSLASIVALLLTDLAAGFLPAAAPAGAKYNSRWGback to top mRNA from alignment at E-siliculosus-1a_M_contig95:633875..640821- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig95.17539.1 ID=mRNA_E-siliculosus-1a_M_contig95.17539.1|Name=mRNA_E-siliculosus-1a_M_contig95.17539.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=6947bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:633875..640821- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:633875..640821- >mRNA_E-siliculosus-1a_M_contig95.17539.1 ID=mRNA_E-siliculosus-1a_M_contig95.17539.1|Name=mRNA_E-siliculosus-1a_M_contig95.17539.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2250bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:633875..640821- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |