mRNA_E-siliculosus-1a_M_contig95.17538.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig95.17538.1
Unique NamemRNA_E-siliculosus-1a_M_contig95.17538.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig95.17538.1 vs. uniprot
Match: D7G1Y1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Y1_ECTSI)

HSP 1 Score: 270 bits (689), Expect = 1.020e-85
Identity = 147/161 (91.30%), Postives = 149/161 (92.55%), Query Frame = 1 
Query:    1 MASPPQQQVQRMDRGSFVSSESFESLTCGAPAVVIERLRQATGADAGPDALKELGESIKKAAVEKLGVGGDKRVVEVAFGGAMGRSFYATADGSTTTADVVLFYTLDPLDIDTKQSTCVRKARTGCELSADEVMQALYKLQPCGGGDSXXXXXXXATTSTS 483
            MASPPQQQVQRMDRGSFVSSESFESLTCGAPAVVIERLRQATGADAGP+ALKELGESIKKAAVEKLG GGDK  VEVAFGGAMGRSFYATADGSTTTADVVLFYTLDPLDIDTKQSTCVRKART CELSADEVMQALYKLQP GGGD+       ATTSTS
Sbjct:    1 MASPPQQQVQRMDRGSFVSSESFESLTCGAPAVVIERLRQATGADAGPNALKELGESIKKAAVEKLGGGGDKGGVEVAFGGAMGRSFYATADGSTTTADVVLFYTLDPLDIDTKQSTCVRKARTECELSADEVMQALYKLQP-GGGDTSDSGSGGATTSTS 160
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig95.17538.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1Y1_ECTSI1.020e-8591.30Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig95contigE-siliculosus-1a_M_contig95:627476..629217 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size486
Model size1481
Exons2
Ec32 orthologEc-07_003710.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig95.17538.1prot_E-siliculosus-1a_M_contig95.17538.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig95 628471..629217 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936524.469275-UTR-E-siliculosus-1a_M_contig95:627475..6284701622936524.469275-UTR-E-siliculosus-1a_M_contig95:627475..628470Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 627476..628470 -
1696251116.3944216-UTR-E-siliculosus-1a_M_contig95:627475..6284701696251116.3944216-UTR-E-siliculosus-1a_M_contig95:627475..628470Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 627476..628470 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936524.484666-CDS-E-siliculosus-1a_M_contig95:628470..6286381622936524.484666-CDS-E-siliculosus-1a_M_contig95:628470..628638Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 628471..628638 -
1696251116.4041302-CDS-E-siliculosus-1a_M_contig95:628470..6286381696251116.4041302-CDS-E-siliculosus-1a_M_contig95:628470..628638Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 628471..628638 -
1622936524.5014646-CDS-E-siliculosus-1a_M_contig95:628899..6292171622936524.5014646-CDS-E-siliculosus-1a_M_contig95:628899..629217Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 628900..629217 -
1696251116.4255452-CDS-E-siliculosus-1a_M_contig95:628899..6292171696251116.4255452-CDS-E-siliculosus-1a_M_contig95:628899..629217Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 628900..629217 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig95.17538.1

>prot_E-siliculosus-1a_M_contig95.17538.1 ID=prot_E-siliculosus-1a_M_contig95.17538.1|Name=mRNA_E-siliculosus-1a_M_contig95.17538.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=162bp
MASPPQQQVQRMDRGSFVSSESFESLTCGAPAVVIERLRQATGADAGPDA
LKELGESIKKAAVEKLGVGGDKRVVEVAFGGAMGRSFYATADGSTTTADV
VLFYTLDPLDIDTKQSTCVRKARTGCELSADEVMQALYKLQPCGGGDSSS
SGSGGATTSTS*
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mRNA from alignment at E-siliculosus-1a_M_contig95:627476..629217-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig95.17538.1 ID=mRNA_E-siliculosus-1a_M_contig95.17538.1|Name=mRNA_E-siliculosus-1a_M_contig95.17538.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1742bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:627476..629217- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGCTTCGCCCCCGCAGCAGCAGGTGCAGAGGATGGACCGTGGGAGCTT
CGTCTCTTCAGAGAGCTTCGAAAGTCTGACCTGCGGCGCCCCCGCTGTCG
TTATCGAGCGACTCCGCCAAGCCACCGGTGCTGACGCCGGCCCGGACGCG
CTAAAAGAGCTCGGTGAGAGCATCAAGAAGGCGGCGGTGGAAAAGTTGGG
GGTGGGTGGGGACAAGCGGGTGGTGGAGGTGGCTTTTGGGGGGGCGATGG
GCCGGTCATTCTACGCCACGGCTGACGGGTCGACAACAACCGCGGACGTT
GTCCTGTTCTACACACTGGTGGGTTGAGGGTAGTTGTGGAGAGGCTTATT
GCGCACCCACCCCGATGCAGACATCGTCGTTATCCACCCCCCGATATCCC
CATAGGACATTGAGTTTGAATATACAGCAACATAGTGTTAGCTTTTTGGG
GCATATCTACAACCACTCGAGTACATACAGTAAATCTTTGCGGGCATAAC
GCCTCCAAATGCGTCGATAACGACAACAACACTGAACCACATCACAACGG
TTCCTGCGTCGAATCGTTTCTTTCTTTAGGACCCATTGGACATCGACACA
AAACAGAGCACATGCGTTCGGAAGGCCAGAACAGGGTGCGAACTCTCGGC
TGACGAGGTTATGCAGGCACTCTACAAGCTTCAGCCTTGCGGCGGCGGTG
ACAGCAGCAGCAGCGGCAGCGGCGGTGCCACCACGTCGACTTCTTAGGGA
TGGCAAAGGCCAGACATAAACGGTCAGGGACGTGAGGGTCACCGCCTTTC
CAGAGCTACGGTATACACATAGCTGTCACTGCTCCAACCGCGCCGTTTGC
GGTGTCTATTTTTCTTTTTCTTGCTTGTTTTGGCGCGCGGGGGGGGGAGG
GGATGCCGCAGGATAAATGTTGTGCCGCATTTGAAATCGGGTCGGCGATG
TCTCCAATAATATTTGTTTATTTATTTCCTAATAATAGATAGTCAGACTA
TCTATGTAAACATGGATGTGTTGGGAAGCCTGAAGTGAATGGTAATGGTC
GTTCGTTGTACACAGTCAATAATGATGCAATAATGATGCAGTAGCTCTGC
AAAGTCCCTGACAAATTTCTTTTTAGAGGTTGCACTTCAATCAATGTGTG
GGGATGTGTGCATGGTTGTTTTTCGTTGTTTGCCGTCGATCGAAGAAGAA
CTAATCAATTGCCGTGTGTAAATAGCCGCAATGTTGTTTGTCGCAACAGA
AACCGAAACTTCCGTCCAAAGGTGGTCAATGGAGTCAATGGGGCTCTAGA
GTTGGTTTCGTTGCGTTTGTCGTCGCGGTTTCGACAAGCCTCCCTTGCTT
TGGATGTACGTTGTGATCTTGTCCGTCGATGATAGATAGTATTAATGCAG
TAAATAAATGTAGATGGTATTCTCCCGAGTGGCAGCCGTTTGCCACCTGC
TCTTTGGTTTTTGGATTTCTTAGTCTAGGCGTTGGACATAGATTTGCAGC
CAGAGCGGACGTTAAAAGTACACCAACCAATCGATCCTTGCACTCTGTGC
ATTTGTTATTTTTTTGCGTCGTCCAACAGCAAAGAAATCCACGTTGAAGT
AGATAGTTCACCCGGCGGACTTTGGTCCGTCGCCACGCGTCGTTTGGTGA
TTGAATTGAGTGAATCAACGCCGCCGCTTGCAGGGAGTTCGTTGGGTCTG
CATCATCTCGAGGTTTCTTGCGATTTAACGCTAAGAAGACGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:627476..629217-

>mRNA_E-siliculosus-1a_M_contig95.17538.1 ID=mRNA_E-siliculosus-1a_M_contig95.17538.1|Name=mRNA_E-siliculosus-1a_M_contig95.17538.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=972bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:627476..629217- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGCTTCGCCCCCGCAGCAGCAGGTGCAGAGGATGGACCGTGGGAGCTT
CGTCTCTTCAGAGAGCTTCGAAAGTCTGACCTGCGGCGCCCCCGCTGTCG
TTATCGAGCGACTCCGCCAAGCCACCGGTGCTGACGCCGGCCCGGACGCG
CTAAAAGAGCTCGGTGAGAGCATCAAGAAGGCGGCGGTGGAAAAGTTGGG
GGTGGGTGGGGACAAGCGGGTGGTGGAGGTGGCTTTTGGGGGGGCGATGG
GCCGGTCATTCTACGCCACGGCTGACGGGTCGACAACAACCGCGGACGTT
GTCCTGTTCTACACACTGATGGCTTCGCCCCCGCAGCAGCAGGTGCAGAG
GATGGACCGTGGGAGCTTCGTCTCTTCAGAGAGCTTCGAAAGTCTGACCT
GCGGCGCCCCCGCTGTCGTTATCGAGCGACTCCGCCAAGCCACCGGTGCT
GACGCCGGCCCGGACGCGCTAAAAGAGCTCGGTGAGAGCATCAAGAAGGC
GGCGGTGGAAAAGTTGGGGGTGGGTGGGGACAAGCGGGTGGTGGAGGTGG
CTTTTGGGGGGGCGATGGGCCGGTCATTCTACGCCACGGCTGACGGGTCG
ACAACAACCGCGGACGTTGTCCTGTTCTACACACTGGACCCATTGGACAT
CGACACAAAACAGAGCACATGCGTTCGGAAGGCCAGAACAGGGTGCGAAC
TCTCGGCTGACGAGGTTATGCAGGCACTCTACAAGCTTCAGCCTTGCGGC
GGCGGTGACAGCAGCAGCAGCGGCAGCGGCGGTGCCACCACGTCGACTTC
TTAGGACCCATTGGACATCGACACAAAACAGAGCACATGCGTTCGGAAGG
CCAGAACAGGGTGCGAACTCTCGGCTGACGAGGTTATGCAGGCACTCTAC
AAGCTTCAGCCTTGCGGCGGCGGTGACAGCAGCAGCAGCGGCAGCGGCGG
TGCCACCACGTCGACTTCTTAG
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