mRNA_E-siliculosus-1a_M_contig95.17535.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig95.17535.1
Unique NamemRNA_E-siliculosus-1a_M_contig95.17535.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig95.17535.1 vs. uniprot
Match: A0A6H5KWT8_9PHAE (Ribosomal_S7 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWT8_9PHAE)

HSP 1 Score: 452 bits (1162), Expect = 3.700e-157
Identity = 229/233 (98.28%), Postives = 232/233 (99.57%), Query Frame = 3 
Query:   24 MATELNPDGWDGGEPVVADDAGAADGWGEAEVDAPLAVEESGISDVQLFNKWTFDDIEIRDISLEDYIAVKGKYATYLPHTAGRYQKKRFRKATCPIVERLCCALMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 722
            MATELNPDGWDGGEPVVADDAGAA+GWGE EV+APLAVEESGISDVQLFNKW+FDDIEIRDISLEDYIAVKGKYATYLPHTAGRYQKKRFRKATCPIVERLCCALMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR
Sbjct:    1 MATELNPDGWDGGEPVVADDAGAAEGWGEPEVEAPLAVEESGISDVQLFNKWSFDDIEIRDISLEDYIAVKGKYATYLPHTAGRYQKKRFRKATCPIVERLCCALMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 233
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig95.17535.1 vs. uniprot
Match: B8CC69_THAPS (RS5, ribosomal protein 5 n=10 Tax=Ochrophyta TaxID=2696291 RepID=B8CC69_THAPS)

HSP 1 Score: 332 bits (852), Expect = 2.420e-110
Identity = 162/192 (84.38%), Postives = 181/192 (94.27%), Query Frame = 3 
Query:  147 GISDVQLFNKWTFDDIEIRDISLEDYIAVKGKYATYLPHTAGRYQKKRFRKATCPIVERLCCALMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 722
            G ++V+LF KW+FDDIEIRDISL DYIA KG +ATYLPHTAGRYQKKRFRKA+CPIVERL C LMRKGRNSGKKLMA RIV+HTLEIIHLLTDQNPVQV+VDA+INSGPREDSTRVG AGVVRRQAVD+SPFRRVN ALYL+ TGARE+SFRN+KT+AECLA+E++NAARGSSNSYAIKKKDEIERV+K+NR
Sbjct:   27 GATEVKLFGKWSFDDIEIRDISLVDYIACKGDHATYLPHTAGRYQKKRFRKASCPIVERLACCLMRKGRNSGKKLMAVRIVQHTLEIIHLLTDQNPVQVVVDAIINSGPREDSTRVGGAGVVRRQAVDMSPFRRVNYALYLLATGAREASFRNLKTVAECLAEELVNAARGSSNSYAIKKKDEIERVSKSNR 218
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig95.17535.1 vs. uniprot
Match: A0A7S3V821_9STRA (Hypothetical protein n=3 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S3V821_9STRA)

HSP 1 Score: 329 bits (844), Expect = 4.700e-109
Identity = 159/199 (79.90%), Postives = 185/199 (92.96%), Query Frame = 3 
Query:  126 PLAVEESGISDVQLFNKWTFDDIEIRDISLEDYIAVKGKYATYLPHTAGRYQKKRFRKATCPIVERLCCALMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 722
            P  V ++G ++++LF KW+FD+IE+RDISLEDYIA KG +ATYLPHTAGRYQ KRFRKA+CPIVERL C LM+KGRNSGKK+MA RIV+HTLEIIH+LTDQNP+Q++VDAVINSGPREDSTRVG AGVVRRQAVD+SPFRRVN ALYLI TGARE+SFRN+KT+AECLA+E+INAARGSSNSYAIKKKDEIERV+K+NR
Sbjct:   25 PEFVGDAGGAEIKLFGKWSFDEIEVRDISLEDYIACKGDHATYLPHTAGRYQMKRFRKASCPIVERLACCLMKKGRNSGKKIMATRIVQHTLEIIHILTDQNPIQIVVDAVINSGPREDSTRVGGAGVVRRQAVDMSPFRRVNYALYLIATGAREASFRNLKTMAECLAEELINAARGSSNSYAIKKKDEIERVSKSNR 223
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig95.17535.1 vs. uniprot
Match: F0XZC6_AURAN (Ribosomal_S7 domain-containing protein n=2 Tax=Pelagomonadales TaxID=54409 RepID=F0XZC6_AURAN)

HSP 1 Score: 326 bits (835), Expect = 4.070e-108
Identity = 158/190 (83.16%), Postives = 177/190 (93.16%), Query Frame = 3 
Query:  153 SDVQLFNKWTFDDIEIRDISLEDYIAVKGKYATYLPHTAGRYQKKRFRKATCPIVERLCCALMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 722
            S+++LF KWT+DD+E+ DISLEDYIAVKGK++ YLPHTAGRYQKKRFRKA CPI ERL CALMRKGRN+GKKL A RIV+ TLEI+HLLTDQNPVQVLV A++ SGPREDSTRVGSAGVVRRQAVD+SPFRRVN ALYL+ TGARE++FRN+KTIAECLADE+INAARGSSNSYAIKKKDEIERVAKANR
Sbjct:    6 SEIKLFGKWTYDDVEVNDISLEDYIAVKGKHSVYLPHTAGRYQKKRFRKALCPITERLVCALMRKGRNNGKKLKAVRIVQSTLEIVHLLTDQNPVQVLVQAILQSGPREDSTRVGSAGVVRRQAVDMSPFRRVNMALYLLCTGAREAAFRNVKTIAECLADEVINAARGSSNSYAIKKKDEIERVAKANR 195
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig95.17535.1 vs. uniprot
Match: W7TXQ4_9STRA (Ribosomal protein S7, conserved site n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TXQ4_9STRA)

HSP 1 Score: 326 bits (836), Expect = 5.780e-108
Identity = 164/201 (81.59%), Postives = 184/201 (91.54%), Query Frame = 3 
Query:  120 DAPLAVEESGISDVQLFNKWTFDDIEIRDISLEDYIAVKGKYATYLPHTAGRYQKKRFRKATCPIVERLCCALMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 722
            D  +A E++  +D++LF KW+  D+EI+D+SLEDYI V GK ATYLPHTAGRYQKKRFRKA CP+VERL  +LMRKGRNSGKKL A RIVKHTLEIIHLLTDQNPVQV+VD++IN+GPREDSTRVGSAGVVRRQAVD+SPFRRVNQA+YLITTGARESSFRNIKTIAE LADEIINAA+GSSNSYAIKKKDE+ERVAKANR
Sbjct:   16 DMAVAFEDNS-ADIKLFGKWSLSDVEIKDLSLEDYIGVNGKCATYLPHTAGRYQKKRFRKAQCPVVERLANSLMRKGRNSGKKLTANRIVKHTLEIIHLLTDQNPVQVVVDSIINAGPREDSTRVGSAGVVRRQAVDMSPFRRVNQAIYLITTGARESSFRNIKTIAETLADEIINAAKGSSNSYAIKKKDEVERVAKANR 215
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig95.17535.1 vs. uniprot
Match: D8TJL0_VOLCA (Component of cytosolic 80S ribosome and 40S small subunit n=2 Tax=Viridiplantae TaxID=33090 RepID=D8TJL0_VOLCA)

HSP 1 Score: 325 bits (833), Expect = 7.620e-108
Identity = 157/189 (83.07%), Postives = 178/189 (94.18%), Query Frame = 3 
Query:  156 DVQLFNKWTFDDIEIRDISLEDYIAVKGKYATYLPHTAGRYQKKRFRKATCPIVERLCCALMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 722
            DV+LF KW+F+DIE++DISLEDYIAVK KYA Y+PHTAGRYQKKRFRKA CPIVERLC +LM  GRN+GKKLMA RIVKH  +IIHLLTDQNP+QVLVDA+INSGPRED+TR+GSAGVVRRQAVD+SP RRVNQA+YL+TTGARE++FRNIKTIAECLADE++NAA+GSSNSYAIKKKDEIERVAKANR
Sbjct:    5 DVKLFGKWSFEDIEVQDISLEDYIAVKTKYAVYVPHTAGRYQKKRFRKALCPIVERLCNSLMMHGRNNGKKLMAVRIVKHAFDIIHLLTDQNPIQVLVDAIINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELVNAAKGSSNSYAIKKKDEIERVAKANR 193
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig95.17535.1 vs. uniprot
Match: A0A835ZGP4_9STRA (Ribosomal protein S7 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGP4_9STRA)

HSP 1 Score: 325 bits (832), Expect = 1.080e-107
Identity = 159/190 (83.68%), Postives = 181/190 (95.26%), Query Frame = 3 
Query:  153 SDVQLFNKWTFDDIEIRDISLEDYIAVKGKYATYLPHTAGRYQKKRFRKATCPIVERLCCALMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 722
            S+++LFNKW++DDIEI DISL DY+AV  K+AT+LPHTAGRYQKKRFRKA CP++ERL  +LMRKGRNSGKKL+AAR+V+ T+EIIHLLTD+NP+Q LV+AVIN+GPREDSTRVGSAGVVRRQAVDLSPFRRVNQA+YL+TTGARESSFRNIKTIAECLADEIINA+RGSSNSYAIKKKDEIERVAKANR
Sbjct:    4 SEIKLFNKWSYDDIEIEDISLSDYLAVGTKHATFLPHTAGRYQKKRFRKAACPLIERLTVSLMRKGRNSGKKLLAARVVRSTMEIIHLLTDENPLQTLVNAVINAGPREDSTRVGSAGVVRRQAVDLSPFRRVNQAIYLLTTGARESSFRNIKTIAECLADEIINASRGSSNSYAIKKKDEIERVAKANR 193
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig95.17535.1 vs. uniprot
Match: A0A6V2ER46_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2ER46_9STRA)

HSP 1 Score: 326 bits (836), Expect = 1.080e-107
Identity = 158/189 (83.60%), Postives = 179/189 (94.71%), Query Frame = 3 
Query:  156 DVQLFNKWTFDDIEIRDISLEDYIAVKGKYATYLPHTAGRYQKKRFRKATCPIVERLCCALMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 722
            +V+LF KW+FD+IE+RDISL DYIA KG +ATYLPHTAGRYQKKRFRKA+CPIVERL C LMRKGRN+GKKLMA RIV+HTLEIIHLLTDQNP+QV+VDA+INSGPREDSTRVG AGVVRRQAVD+SPFRRVN ALYL+ TGARE+SFRN+KT+AECLA+E+INAARGSSNSYAIKKKDEIERV+K+NR
Sbjct:   45 EVKLFGKWSFDEIEVRDISLVDYIACKGDHATYLPHTAGRYQKKRFRKASCPIVERLACCLMRKGRNAGKKLMAVRIVQHTLEIIHLLTDQNPIQVVVDAIINSGPREDSTRVGGAGVVRRQAVDMSPFRRVNYALYLLATGAREASFRNLKTMAECLAEELINAARGSSNSYAIKKKDEIERVSKSNR 233
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig95.17535.1 vs. uniprot
Match: A0A7S4N0H9_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N0H9_9STRA)

HSP 1 Score: 326 bits (835), Expect = 1.430e-107
Identity = 158/192 (82.29%), Postives = 179/192 (93.23%), Query Frame = 3 
Query:  147 GISDVQLFNKWTFDDIEIRDISLEDYIAVKGKYATYLPHTAGRYQKKRFRKATCPIVERLCCALMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 722
            G ++V+LF KW+FDD+E+RDISL DYIA  G +A +LPHTAGRYQKKRFRKA+CPIVERL C LM+KGRNSGKKLMA RIV+HTLEIIHLLTDQNP+QV+VDA+INSGPREDSTRVG AGVVRRQAVD+SPFRRVN ALYLI TGARE+SFRN+KT+AECLA+E+INAARGSSNSYAIKKKDEIERVAK+NR
Sbjct:   40 GATEVKLFGKWSFDDVEVRDISLVDYIACTGDHAVFLPHTAGRYQKKRFRKASCPIVERLACCLMKKGRNSGKKLMACRIVQHTLEIIHLLTDQNPIQVVVDAIINSGPREDSTRVGGAGVVRRQAVDMSPFRRVNYALYLIATGAREASFRNLKTMAECLAEELINAARGSSNSYAIKKKDEIERVAKSNR 231
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig95.17535.1 vs. uniprot
Match: A0A7S1CV61_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CV61_CYCTE)

HSP 1 Score: 326 bits (836), Expect = 3.500e-107
Identity = 161/212 (75.94%), Postives = 188/212 (88.68%), Query Frame = 3 
Query:  108 EAEVDAPLAVEES-------GISDVQLFNKWTFDDIEIRDISLEDYIAVKGKYATYLPHTAGRYQKKRFRKATCPIVERLCCALMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 722
            E EV+  +  EE        G ++++LF KW+FDDIEIRDISL DYIA KG +ATYLPHTAGRYQKKRFRKA+CPI+ERL C LM+KGRNSGKKLMA R+++HTLEIIHLLTDQNP+QV+VDA+INSGPREDSTRVG AGVVRRQAVD+SPFRRVN ALYL+ TGARE+SFRN+KT+AECLA+E++NAARGSSNSYAIKKKDEIERV+K+NR
Sbjct:   56 EGEVEEGVDFEEEDEFVAVGGAAEIKLFGKWSFDDIEIRDISLVDYIACKGDHATYLPHTAGRYQKKRFRKASCPILERLACCLMKKGRNSGKKLMACRLLQHTLEIIHLLTDQNPMQVVVDAIINSGPREDSTRVGGAGVVRRQAVDMSPFRRVNYALYLLATGAREASFRNLKTMAECLAEELVNAARGSSNSYAIKKKDEIERVSKSNR 267
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig95.17535.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KWT8_9PHAE3.700e-15798.28Ribosomal_S7 domain-containing protein n=2 Tax=Ect... [more]
B8CC69_THAPS2.420e-11084.38RS5, ribosomal protein 5 n=10 Tax=Ochrophyta TaxID... [more]
A0A7S3V821_9STRA4.700e-10979.90Hypothetical protein n=3 Tax=Bacillariophyta TaxID... [more]
F0XZC6_AURAN4.070e-10883.16Ribosomal_S7 domain-containing protein n=2 Tax=Pel... [more]
W7TXQ4_9STRA5.780e-10881.59Ribosomal protein S7, conserved site n=2 Tax=Monod... [more]
D8TJL0_VOLCA7.620e-10883.07Component of cytosolic 80S ribosome and 40S small ... [more]
A0A835ZGP4_9STRA1.080e-10783.68Ribosomal protein S7 domain-containing protein n=1... [more]
A0A6V2ER46_9STRA1.080e-10783.60Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4N0H9_9STRA1.430e-10782.29Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S1CV61_CYCTE3.500e-10775.94Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig95contigE-siliculosus-1a_M_contig95:604821..610358 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size702
Model size1286
Exons5
Ec32 orthologEc-07_003740.1
Ec32 ortholog descriptionRibosomal protein S5/S7, eukaryotic/archaeal
Hectar predicted targeting categoryother localisation
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011,ko03029
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.J
EC1.18.1.6
EggNOG OGsCOG0049@1,KOG3291@2759
EggNOG free text desc.rRNA binding
GOsGO:0000028,GO:0000184,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006139,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006407,GO:0006412,GO:0006413,GO:0006450,GO:0006518,GO:0006605,GO:0006611,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009536,GO:0009719,GO:0009725,GO:0009735,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030054,GO:0030312,GO:0030684,GO:0030686,GO:0031090,GO:0031503,GO:0031974,GO:0031981,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0042221,GO:0042254,GO:0042255,GO:0042274,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048519,GO:0050657,GO:0050658,GO:0050789,GO:0050896,GO:0051029,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0055044,GO:0060255,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0070925,GO:0070972,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097064,GO:0097159,GO:0098588,GO:0098805,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
KEGG ModuleM00177
KEGG Pathwayko03010,map03010
KEGG koko:K02989,ko:K18914
Preferred nameRPS5
Seed eggNOG ortholog2880.D7G1X8
Seed ortholog evalue2.3e-125
Seed ortholog score454.9
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936523.943057-UTR-E-siliculosus-1a_M_contig95:604820..6053811622936523.943057-UTR-E-siliculosus-1a_M_contig95:604820..605381Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 604821..605381 -
1696251116.144408-UTR-E-siliculosus-1a_M_contig95:604820..6053811696251116.144408-UTR-E-siliculosus-1a_M_contig95:604820..605381Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 604821..605381 -
1622936524.0667133-UTR-E-siliculosus-1a_M_contig95:610335..6103581622936524.0667133-UTR-E-siliculosus-1a_M_contig95:610335..610358Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 610336..610358 -
1696251116.2206683-UTR-E-siliculosus-1a_M_contig95:610335..6103581696251116.2206683-UTR-E-siliculosus-1a_M_contig95:610335..610358Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 610336..610358 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936523.9629905-CDS-E-siliculosus-1a_M_contig95:605381..6055491622936523.9629905-CDS-E-siliculosus-1a_M_contig95:605381..605549Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 605382..605549 -
1696251116.1603012-CDS-E-siliculosus-1a_M_contig95:605381..6055491696251116.1603012-CDS-E-siliculosus-1a_M_contig95:605381..605549Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 605382..605549 -
1622936523.9775739-CDS-E-siliculosus-1a_M_contig95:606053..6061701622936523.9775739-CDS-E-siliculosus-1a_M_contig95:606053..606170Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 606054..606170 -
1696251116.1763382-CDS-E-siliculosus-1a_M_contig95:606053..6061701696251116.1763382-CDS-E-siliculosus-1a_M_contig95:606053..606170Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 606054..606170 -
1622936523.9986517-CDS-E-siliculosus-1a_M_contig95:607529..6076641622936523.9986517-CDS-E-siliculosus-1a_M_contig95:607529..607664Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 607530..607664 -
1696251116.1869416-CDS-E-siliculosus-1a_M_contig95:607529..6076641696251116.1869416-CDS-E-siliculosus-1a_M_contig95:607529..607664Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 607530..607664 -
1622936524.0162697-CDS-E-siliculosus-1a_M_contig95:608567..6086941622936524.0162697-CDS-E-siliculosus-1a_M_contig95:608567..608694Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 608568..608694 -
1696251116.1971219-CDS-E-siliculosus-1a_M_contig95:608567..6086941696251116.1971219-CDS-E-siliculosus-1a_M_contig95:608567..608694Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 608568..608694 -
1622936524.044691-CDS-E-siliculosus-1a_M_contig95:610180..6103351622936524.044691-CDS-E-siliculosus-1a_M_contig95:610180..610335Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 610181..610335 -
1696251116.2073033-CDS-E-siliculosus-1a_M_contig95:610180..6103351696251116.2073033-CDS-E-siliculosus-1a_M_contig95:610180..610335Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 610181..610335 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig95.17535.1prot_E-siliculosus-1a_M_contig95.17535.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig95 605382..610335 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig95.17535.1

>prot_E-siliculosus-1a_M_contig95.17535.1 ID=prot_E-siliculosus-1a_M_contig95.17535.1|Name=mRNA_E-siliculosus-1a_M_contig95.17535.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=234bp
MATELNPDGWDGGEPVVADDAGAADGWGEAEVDAPLAVEESGISDVQLFN
KWTFDDIEIRDISLEDYIAVKGKYATYLPHTAGRYQKKRFRKATCPIVER
LCCALMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGP
REDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAE
CLADEIINAARGSSNSYAIKKKDEIERVAKANR*
back to top

mRNA from alignment at E-siliculosus-1a_M_contig95:604821..610358-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig95.17535.1 ID=mRNA_E-siliculosus-1a_M_contig95.17535.1|Name=mRNA_E-siliculosus-1a_M_contig95.17535.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=5538bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:604821..610358- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CTTCCCCGTACGCCGGAACAAACATGGCCACCGAACTGAACCCCGACGGA
TGGGATGGAGGAGAGCCCGTGGTGGCTGACGACGCCGGTGCCGCCGACGG
GTGGGGCGAGGCGGAGGTGGACGCGCCGTTGGCCGTCGAGGAGTCCGGCA
TCTCGGATGTGCAGCTCTTCAATAAGTGGTGAGAGTGTAGCGCAGGATTT
CGACGTGAGAGCCAAGGGGCTGCTGCTCCCAGACCCGGGTGTTGCTGTTT
GCTGGCTGCATCGGCATCGTTCTACGCATAGCGTTTGCAAGGACGTTGCT
GTTGTCTGCTTTGGCCTTTGTTAGGTTGGGATTTATCCACGCCTGCTTCT
TCGTTGCCGTCAAAGTCACACACAACCTCTCGCAGAGGCTTTGCGGACGG
CGGCGGTGCGGCCGTGGGGGCCAGAGGTGATACATTGGCATGATGTCGGT
TATGCTACATACACCATAGGGGAATCGTGGTTTCCTGGCTGGGATCACGA
GATACTCGTTGCAACTCCCTGGCTAGTTGGTCTTGTGATGAGTTTTCTCC
CTACAACTTGTCCTCTCCGGTTGTTTCTCCCACAATGAAAACCAGCGAGT
TTTTGGGTGGGGAAGCAAATCACCGCTCCCTTTGCATGGACGACACTGCT
TGCCTTCCACGGCTCACGGCTGCTGCGTCGTTGTTGTCTACTGCAGGGTT
CGCAATCGTTAGCAACGGCACACCCTATGTCCGGTTCAGCCTTGCCTTTG
GTCAGATTTTTTGCATGTGTGAAAATGGACGTAGTATCTCTCGCTTCACT
CCAAAACCCCCTTGTCCTCCAATATCGGAGATTTGGATGCCGCTCATCGC
GCACGGATTGGTCGAAGGAGATCGCGTCTCTCGTCAACTCGATGGTTGCT
TCTCATCAATCCGCTCGATTCGCGTTGCACGTCATGGAGCAGCCGAAACC
CCTCCTGCACACCCGTTCCACTTCTACAGTTCTGTTCCAGAAACGTCAAC
CAACCCCAAACTGACCCAAATAGCGCGACTCGTAGAACCTCTACCAATAT
ATAGCGCCTGATACTGCTCTATGTTTATTGTGTTTGGCACACATCACCTC
CGGTCCAAGCCGACTTGTTTGTGGTGACTAGCTGATGAGCATATCACGCA
GGTTGCCGATTTGATTCTTTGACACTCGGCCTTAACGAGAAGAGACGTTT
TCAGACGCGCCTTTTTCGTGATTCAATGAAGGAAGCACACAAATCATCAT
GACGGGATAAGGATAAGCACCAAGGTCTTGGTGCGCCAAGACGCGATGCC
CTCCCACCGAGGCACCGGCGATACCGTCGCCGCCTTCTTCTGCTATGTTG
CATTTTTCAGCTGTCCACCACCGGCTGGTTTCCTCTGCATTTTTCTCTCT
CTCCGGCAGTCTCTCTCACGCCGTCCTCGCTGTCTCTTTCCTTTTTGCGG
AGCGTTGGGCAATTGACTCCCCCTTTCTTGCTACGATGGAAACATGGAAA
CCGCAAGGCAGGATAAGACAGTCCGCATGCCTTCTCGTTCTGCAAACCGC
TTGAGGAAGTCAACAAATTACTTGTATGTTTTACGCTCGTCGCCCGCAAC
GTCCAACCAGTATATTTCCAAATCTTGGTACTTCTGTATCAATGCGCGTT
CTGTGTTTCGTCAGGACTTTCGACGACATCGAGATCCGCGACATCTCCCT
GGAGGACTACATCGCGGTGAAGGGCAAGTACGCCACCTACCTTCCCCACA
CGGCCGGCCGCTACCAGAAGAAGCGCTTCCGCAAGGCCACCGTGAGTATT
ATAAGATAGAAGTGCCTGCCTCCCCGTCAACTTTTTGTTTTTTATGACTC
ACCGAATCCATAGCGTCAACGGCAGGCTCACCAATCTACGATCTTTCTTG
TGGATCCTCCTTGTTGCCTCTTCAATCCCCGTCAACCTTCTTCGTTTATG
GTGCTTGGCGTTGCTGCTTTCTTGTCGATCCTCCTTCTTGCCTCTTCAAT
CCCCGGTCTTTCTTGGCATATGGTTTGGCGTTGCTGCTTTCTTGTCGATC
CTCCTTCTTGCCTATTCAATCCCCAGTCGTTCTTAGTTTATGGTGCTTGG
CTTTTCTACTTTTTTGCCGATCCTCCCCTCGTTTATGGCCGCTCAATCCC
CGGCGTATGTTGGTTTGTGATGCTTTGCTTTGCTTTGCGATGCTGAAGCG
GCAAGTCAAACAGGCGTTGGGTCAGTTGCCGCCTAGTTTTGTTATTGCCC
GGACGAGGCATCTCGTCATCGTTTCAGGTTCAACCGTTTGTGTAGGCAGT
CTTGCGGGGGGGGCAGCTACAACTGTAGTACCCTTTGTTGCGCAGCCACC
CCCGTCCGTTTCGACCCTCGGGCTTGTGCCTCAGTTCGATGGGATAGTGT
TGCTGCCGCCTTCATGGCTATCGTTCTGTGGTCCTCCAATCAACTCCCCG
TGCTGTTGCGACGGCGGTACCTGCTGTGTTGATTCCGTCATCAGTCGTTA
CCCTCACTGCTGAATCTTCACCGTCCCATATGATACGATATGCCCGAAGA
ATCAAAGCCCATGGTATGTATTGTGGCAGGAAACTAAACCCAACCCACAC
ACACGTCTACGGTAATTTTCACCGCTGTCCGGCTGACTAAAATCAAAACG
TGTGTGCTTGTTCCGATCGCACCATCGACATGGACGTCAACCAGTGCCCC
ATCGTGGAGCGCCTTTGCTGCGCCTTGATGCGCAAGGGCCGCAACAGCGG
CAAGAAGCTCATGGCTGCCCGCATCGTCAAGCACACCCTGGAGATCATCC
ACCTCCTCACCGACCAGAACCCCGTCCAGGTGAGCACAAGCATCATTTTT
TTTTTGGAGGTCACCCCTTCGTTTTCTGGCCATCAGTCCTTACACCTAAA
TGCCTCTCTTTCTTTTGTCATTCCTGTTTTTCTGGACGTCAGTCCTTGCA
CGTTACTACAGTAGCGCCTAAGGACTGACGTGATGAAAAAAAGCGATGAC
AAAAAAAAACAAGCATCAAGGAGTGAGGACTGACGTCCAGAAAAACAAGA
ATGACGAAGAATAGCTTTAGGTGTAAGGACTGATGTCCAGAAAAGGGAGG
GACGACCAAAAAACAAATACTGCGGTCCTTACACCTTTTCGGTACAACAG
TTGTGAACGCACCAGCTGGGGGTCACACAGGAGGAAAGTTAGGCCAACGC
AGGATTCGTTTTCTCGGCCTTCCTTCTTCGGTGCAGCTACATGCGTGGAA
TAATTTCTGTGGCCTGGCAATCTGCACGTGGAACGACGAAGCTGTAGCTT
CTGTGTACAACTACGCAGCCGTCTCTTTTTCACATCGCATCGCGATACAA
TGTGACGGCCGGTTCGAGGAGCCACTGCGATCGTGTGACCAAGCTGGTGG
GGAACCATTTGCAGGATGGAGTTCGAGTTCCAAGCACGCGCTGGAACCCA
TGCTCAAGAACGATTTTCCTCTCGTAATGCCACTCACTGTAGTGCAGTTC
TTGGTAGATGAGCGTTGGCTCACGGGGCCGAGGCAAAGATAGCGCGCTTT
CACCGAGCTTTCATGTAGTGCTTTAGAAAGACGTCCCAATCACACCATCG
GGAGCAAGTCTCACGCGGCTGACAAAAAGCAGCCGTTACACTTTGCTTCC
GGTTTTGATGTGGAAACCCCATAAAATATGAACTCTTTCTACGGTTCGGC
CCGCTCTCTCGACTTTCCCGCATGCCGTTTGCTACAGTTTTTGATAACAG
CACCCCCCGAATACAAAGTATATCCCTCCAATCAACTCCGACGTTTCGGA
CCCAATTGCGTGTGAAAGTGGTTGCCCACCCGGCGCGTCAGATCTAAAAT
AGAACAGACGCAATCGTCTATCTTTCTCCCCGAGCCCAAGTCCTGAACAA
ACGAAGTGATGGCGCCTACAGAAGACAGCATGGCAGCACCTTTTCTTTTT
CTTCGCCGACTTCAGGACCAATAATGCGTCCCTCGAGACAACAGAAGGCG
CGCCAAGTTTCAAGCGTTGCATCTTGATCATGCTCGTTGTCGTCGCCGTT
TACGTGAACCAGAAGCTTGAAAAGCGCCACCGTAATGATAACATCCAATC
CACTGTACGAAACACGCACGTTTTTAACATTTGCTTCCGTCGCTCGGTGC
TTGACTCTGGGAACCCTGGACTGTTTTCCGCCTCGAAGGTGCTCGTGGAC
GCGGTGATCAACTCGGGACCCCGGGAAGACTCCACGCGCGTGGGATCCGC
CGGTGTTGTGCGGCGCCAGGCCGTGGACCTCTCGCCTTTCCGCCGCGTGA
ACCAGGTATTCTACGTTTGTACCAGTACAGTATCACTTGTGCCATGTGGC
GCCGTGTCTGTTGAGACAGACGGTGTTCGTGGTCGGCGTGTTTTGTCGTG
CTGTGGCCCCGTACCGTACCACTGTGTCCCTTTTTGTGGACAGCGCGTGT
GTCTGGTTGTGCTTGCGCATGGGATGAGAGCAGAATGTCTCGTTCGGGGT
GTGTAGATTGGCGCACCAGGTTTGGTGCAGTCCGCACAAAGTTTTTTTTA
ATCGTGTGTGAATCTCCCAACAACGAGAATTTAGTCGAAAAACTGCTCAG
GTTTCGACTGTTTTTCCAATTCAGGCGATCTTGGCGGAGTTGCTTTCTCG
ATATACATGGATCGCCTATGTTTCAACATGGCGACGGTGCTACAATCGCG
TGCTGCAAGGTTATGGTTCACGTGACCTCCCTCCCGTGGTATGTTCAATC
GTTGACTCTCCCTTCGTCTCTCTCCTCGTCCTTCTGCGGCCGCTTCTTGT
TATTGTCAGGCTCTGTACCTGATCACGACCGGCGCGCGCGAGTCGTCCTT
CCGCAACATCAAGACCATCGCCGAGTGCCTCGCAGACGAGATCATCAACG
CCGCCCGCGGGTCGTCGAACTCCTACGCCATCAAGAAGAAGGACGAGATC
GAGCGCGTGGCCAAGGCTAACCGGTAGATTTTCTCGCGGCTAGTTTTCCC
CCTCGGAAGGAAGGCCAGCAAGACGACGGCCTCCTCTCTTCTGTCCTGTC
GTGTACCGCCGCTTTTTTCTGGACAAGACACGCGTCTCCTTGCGGAGATG
TTGGGCCTTTTGTTTTGAGAGCGTACGCGCGCGGTCTCACGATTTTTTTG
TGGGGGTGTGGTGGTGGGCCTCTGGCTCTTGTTGCTTCCGAGAGGGGGGG
GGGGTTGTTCTGACTACTATGGGGAGGTTCGGCGAAGGGAGAGGGCAACA
GGGATGATGCATTCCTCTCTCTTGGTCGCTCTGCGGTTAAATGCAGGACT
AAAAATGACATCTGAAACCAACGAATGGTTGCGCTGCCGGTTGTGACGGC
GGTGTGGGGGTGAAGACATCTCGTGTGTCTGTCATCTCCATGAACAGTCG
CGCCCACATGTCCCCCGATGCTGAACCCCGACTACTTGTCTCCCGTACTA
CTTCTGGGTGTCACAACGAAAACGACCGCACGGAGAGTCCAATGTCAGGT
GACGAAGGACGAGGGTCTTCCGTGTCTTCAACCTAAAC
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:604821..610358-

>mRNA_E-siliculosus-1a_M_contig95.17535.1 ID=mRNA_E-siliculosus-1a_M_contig95.17535.1|Name=mRNA_E-siliculosus-1a_M_contig95.17535.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1404bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:604821..610358- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGCCACCGAACTGAACCCCGACGGATGGGATGGAGGAGAGCCCGTGGT
GGCTGACGACGCCGGTGCCGCCGACGGGTGGGGCGAGGCGGAGGTGGACG
CGCCGTTGGCCGTCGAGGAGTCCGGCATCTCGGATGTGCAGCTCTTCAAT
AAGTGATGGCCACCGAACTGAACCCCGACGGATGGGATGGAGGAGAGCCC
GTGGTGGCTGACGACGCCGGTGCCGCCGACGGGTGGGGCGAGGCGGAGGT
GGACGCGCCGTTGGCCGTCGAGGAGTCCGGCATCTCGGATGTGCAGCTCT
TCAATAAGTGGACTTTCGACGACATCGAGATCCGCGACATCTCCCTGGAG
GACTACATCGCGGTGAAGGGCAAGTACGCCACCTACCTTCCCCACACGGC
CGGCCGCTACCAGAAGAAGCGCTTCCGCAAGGCCACCGACTTTCGACGAC
ATCGAGATCCGCGACATCTCCCTGGAGGACTACATCGCGGTGAAGGGCAA
GTACGCCACCTACCTTCCCCACACGGCCGGCCGCTACCAGAAGAAGCGCT
TCCGCAAGGCCACCTGCCCCATCGTGGAGCGCCTTTGCTGCGCCTTGATG
CGCAAGGGCCGCAACAGCGGCAAGAAGCTCATGGCTGCCCGCATCGTCAA
GCACACCCTGGAGATCATCCACCTCCTCACCGACCAGAACCCCGTCCAGT
GCCCCATCGTGGAGCGCCTTTGCTGCGCCTTGATGCGCAAGGGCCGCAAC
AGCGGCAAGAAGCTCATGGCTGCCCGCATCGTCAAGCACACCCTGGAGAT
CATCCACCTCCTCACCGACCAGAACCCCGTCCAGGTGCTCGTGGACGCGG
TGATCAACTCGGGACCCCGGGAAGACTCCACGCGCGTGGGATCCGCCGGT
GTTGTGCGGCGCCAGGCCGTGGACCTCTCGCCTTTCCGCCGCGTGAACCA
GGTGCTCGTGGACGCGGTGATCAACTCGGGACCCCGGGAAGACTCCACGC
GCGTGGGATCCGCCGGTGTTGTGCGGCGCCAGGCCGTGGACCTCTCGCCT
TTCCGCCGCGTGAACCAGGCTCTGTACCTGATCACGACCGGCGCGCGCGA
GTCGTCCTTCCGCAACATCAAGACCATCGCCGAGTGCCTCGCAGACGAGA
TCATCAACGCCGCCCGCGGGTCGTCGAACTCCTACGCCATCAAGAAGAAG
GACGAGATCGAGCGCGTGGCCAAGGCTAACCGGTAGGCTCTGTACCTGAT
CACGACCGGCGCGCGCGAGTCGTCCTTCCGCAACATCAAGACCATCGCCG
AGTGCCTCGCAGACGAGATCATCAACGCCGCCCGCGGGTCGTCGAACTCC
TACGCCATCAAGAAGAAGGACGAGATCGAGCGCGTGGCCAAGGCTAACCG
GTAG
back to top