mRNA_E-siliculosus-1a_M_contig95.17530.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig95.17530.1
Unique NamemRNA_E-siliculosus-1a_M_contig95.17530.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig95.17530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig95contigE-siliculosus-1a_M_contig95:572058..573618 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size582
Model size891
Exons2
Ec32 orthologEc-07_003780.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig95.17530.1prot_E-siliculosus-1a_M_contig95.17530.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig95 572262..573513 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936522.6925478-UTR-E-siliculosus-1a_M_contig95:572057..5722611622936522.6925478-UTR-E-siliculosus-1a_M_contig95:572057..572261Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 572058..572261 -
1696251115.705834-UTR-E-siliculosus-1a_M_contig95:572057..5722611696251115.705834-UTR-E-siliculosus-1a_M_contig95:572057..572261Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 572058..572261 -
1622936522.812872-UTR-E-siliculosus-1a_M_contig95:573513..5736181622936522.812872-UTR-E-siliculosus-1a_M_contig95:573513..573618Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 573514..573618 -
1696251115.7469456-UTR-E-siliculosus-1a_M_contig95:573513..5736181696251115.7469456-UTR-E-siliculosus-1a_M_contig95:573513..573618Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 573514..573618 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936522.7169018-CDS-E-siliculosus-1a_M_contig95:572261..5726421622936522.7169018-CDS-E-siliculosus-1a_M_contig95:572261..572642Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 572262..572642 -
1696251115.7160914-CDS-E-siliculosus-1a_M_contig95:572261..5726421696251115.7160914-CDS-E-siliculosus-1a_M_contig95:572261..572642Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 572262..572642 -
1622936522.7938304-CDS-E-siliculosus-1a_M_contig95:573312..5735131622936522.7938304-CDS-E-siliculosus-1a_M_contig95:573312..573513Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 573313..573513 -
1696251115.7330148-CDS-E-siliculosus-1a_M_contig95:573312..5735131696251115.7330148-CDS-E-siliculosus-1a_M_contig95:573312..573513Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 573313..573513 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig95.17530.1

>prot_E-siliculosus-1a_M_contig95.17530.1 ID=prot_E-siliculosus-1a_M_contig95.17530.1|Name=mRNA_E-siliculosus-1a_M_contig95.17530.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=194bp
MCKIVANKPTASCTPHGKSLRQARLEVLSRNTPREHLPSGEKEQRVAVNS
RQAAMSVSDRSSFRVSQRPQRDGNGCKWQQERGRREAASGRPTKTGKRLG
TIDSTLLTAVADSNHRGGHSSVPNKARSTGGGREPAKRDRRSKETMARVA
EECKRKAVERARKKKRRNRPERRAAAKAIVEYFDLLPFSTNAQ*
back to top

mRNA from alignment at E-siliculosus-1a_M_contig95:572058..573618-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig95.17530.1 ID=mRNA_E-siliculosus-1a_M_contig95.17530.1|Name=mRNA_E-siliculosus-1a_M_contig95.17530.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1561bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:572058..573618- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CTGGCGATCCTGCTCCTCCTGTCTCTCTCTTCGATCCTGAGGCTACGTTG
TAGTGGCGATGGATCGTGGAAATGACGCGGAAACCGAGAATAAGCTCGGC
GAACAATGTGCAAGATCGTCGCGAACAAACCAACGGCGAGTTGTACGCCG
CACGGAAAAAGCCTACGACAAGCCCGGTTAGAGGTCTTGTCGAGAAACAC
GCCGCGTGAGCACCTACCATCGGGAGAGAAGGAGCAACGTGTGGCAGTCA
ACTCCAGGCAGGCCGCCATGAGCGTCAGCGACCGCAGCAGTTTTCGCGTG
TCTCAGGTGAAGAAACAAGGCGGGCGGGCACCGTATGTACCGGGGGTGAC
ACAAGATGCCACACACCCCGGGACCTATTTTCAGAGCTCGATTGCTCCAC
AGCAGAAGGGAGGGTGGCGGTGCCAAAAATGATGGTGATGGAATCGCCTC
GTCCAGATCTCCCAAAAACATGTCATTTGAGTTATATCCTCTTGTTCGTG
GAGTACTCGAAGTTTGCTTGAAAATCGGTCCGGGGTGTGTGGTATCTTAC
GTCATGTGACCTACGGTACGGCAGTCTACAGTTTATTGTCCTGGTGGGTG
GTGATGCAGTGGGGCTTGGGGAGATGTATGCACAGCCGAAGTAGAAGGTT
GCCTAGAGCTGTGTTGTTGTTTCCTGATACGTAGCTCCTTCGCTCGGCGG
TCGGTTCCAACGTTCACTCGGCACAGCATGCGGACCCGCAGCTAGACGAA
CGGTTTGGCAAAATCTGAATAATTTTGAATGTCGCCGCAAGTGCAAGAAA
ATGGTTAGGTCTCGACGTAATCAAGACACAGCTCACTCGAGGATCCCATA
TTATATTGTCCGGTGTATTTATAGTCACCTGCACTCAATCAACTGCGGTC
GTGATGAAAGAGTAAGAAACCGAGCCTCCACCCGACATGGACGTTTTCTC
TCGCCCGGCCCCTGCTGTTTGTACAGCGGCCGCAGCGCGATGGGAATGGA
TGCAAATGGCAGCAAGAAAGAGGGAGAAGGGAGGCAGCAAGCGGCCGACC
CACAAAGACAGGAAAACGCCTAGGAACAATCGATTCGACGCTACTAACAG
CAGTAGCAGACAGCAACCACCGCGGTGGGCATTCGTCTGTCCCCAACAAA
GCTAGGTCTACGGGCGGAGGTCGAGAGCCGGCCAAAAGGGACCGGCGGAG
CAAAGAGACAATGGCGAGAGTGGCCGAAGAATGCAAGCGGAAAGCCGTCG
AGCGTGCCAGGAAGAAAAAGAGGAGGAACCGCCCGGAACGCCGGGCGGCG
GCAAAAGCCATCGTTGAATACTTCGATTTGCTGCCTTTCTCGACGAACGC
GCAGTAGCACTAGCTTGGTGTGACGAGATTAAGCTGTGTGTAGGTTGCGG
CTCCGTTTCAGCCCGGTTCCTTTTCGTTATCCTCCTTTCTCTGTCAGTCG
CTCGCTACCGCTCACTCCCAAGCGACACTGAGTGAGCAAGAAGGAACGTC
AACACTGCTTGTACTGTTAGTAACAACCGTTGTTCCACTGTTTGTATGTA
TGAGCTCGGAA
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:572058..573618-

>mRNA_E-siliculosus-1a_M_contig95.17530.1 ID=mRNA_E-siliculosus-1a_M_contig95.17530.1|Name=mRNA_E-siliculosus-1a_M_contig95.17530.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1164bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:572058..573618- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTGCAAGATCGTCGCGAACAAACCAACGGCGAGTTGTACGCCGCACGG
AAAAAGCCTACGACAAGCCCGGTTAGAGGTCTTGTCGAGAAACACGCCGC
GTGAGCACCTACCATCGGGAGAGAAGGAGCAACGTGTGGCAGTCAACTCC
AGGCAGGCCGCCATGAGCGTCAGCGACCGCAGCAGTTTTCGCGTGTCTCA
GATGTGCAAGATCGTCGCGAACAAACCAACGGCGAGTTGTACGCCGCACG
GAAAAAGCCTACGACAAGCCCGGTTAGAGGTCTTGTCGAGAAACACGCCG
CGTGAGCACCTACCATCGGGAGAGAAGGAGCAACGTGTGGCAGTCAACTC
CAGGCAGGCCGCCATGAGCGTCAGCGACCGCAGCAGTTTTCGCGTGTCTC
AGCGGCCGCAGCGCGATGGGAATGGATGCAAATGGCAGCAAGAAAGAGGG
AGAAGGGAGGCAGCAAGCGGCCGACCCACAAAGACAGGAAAACGCCTAGG
AACAATCGATTCGACGCTACTAACAGCAGTAGCAGACAGCAACCACCGCG
GTGGGCATTCGTCTGTCCCCAACAAAGCTAGGTCTACGGGCGGAGGTCGA
GAGCCGGCCAAAAGGGACCGGCGGAGCAAAGAGACAATGGCGAGAGTGGC
CGAAGAATGCAAGCGGAAAGCCGTCGAGCGTGCCAGGAAGAAAAAGAGGA
GGAACCGCCCGGAACGCCGGGCGGCGGCAAAAGCCATCGTTGAATACTTC
GATTTGCTGCCTTTCTCGACGAACGCGCAGTAGCGGCCGCAGCGCGATGG
GAATGGATGCAAATGGCAGCAAGAAAGAGGGAGAAGGGAGGCAGCAAGCG
GCCGACCCACAAAGACAGGAAAACGCCTAGGAACAATCGATTCGACGCTA
CTAACAGCAGTAGCAGACAGCAACCACCGCGGTGGGCATTCGTCTGTCCC
CAACAAAGCTAGGTCTACGGGCGGAGGTCGAGAGCCGGCCAAAAGGGACC
GGCGGAGCAAAGAGACAATGGCGAGAGTGGCCGAAGAATGCAAGCGGAAA
GCCGTCGAGCGTGCCAGGAAGAAAAAGAGGAGGAACCGCCCGGAACGCCG
GGCGGCGGCAAAAGCCATCGTTGAATACTTCGATTTGCTGCCTTTCTCGA
CGAACGCGCAGTAG
back to top