mRNA_E-siliculosus-1a_M_contig95.17527.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig95.17527.1
Unique NamemRNA_E-siliculosus-1a_M_contig95.17527.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig95.17527.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig95contigE-siliculosus-1a_M_contig95:544428..544683 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size174
Model size256
Exons1
Ec32 orthologEc-07_003820.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936521.9200003-UTR-E-siliculosus-1a_M_contig95:544427..5445091622936521.9200003-UTR-E-siliculosus-1a_M_contig95:544427..544509Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 544428..544509 -
1696251115.3622916-UTR-E-siliculosus-1a_M_contig95:544427..5445091696251115.3622916-UTR-E-siliculosus-1a_M_contig95:544427..544509Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 544428..544509 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936521.9337037-CDS-E-siliculosus-1a_M_contig95:544509..5446831622936521.9337037-CDS-E-siliculosus-1a_M_contig95:544509..544683Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 544510..544683 -
1696251115.3709214-CDS-E-siliculosus-1a_M_contig95:544509..5446831696251115.3709214-CDS-E-siliculosus-1a_M_contig95:544509..544683Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 544510..544683 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig95.17527.1prot_E-siliculosus-1a_M_contig95.17527.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig95 544510..544683 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig95.17527.1

>prot_E-siliculosus-1a_M_contig95.17527.1 ID=prot_E-siliculosus-1a_M_contig95.17527.1|Name=mRNA_E-siliculosus-1a_M_contig95.17527.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=58bp
MLPILSQTKGKKTGCSLGGRVHEDYEVGRWDMVLASEELLLYVRGIAESG
SPFRLCC*
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mRNA from alignment at E-siliculosus-1a_M_contig95:544428..544683-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig95.17527.1 ID=mRNA_E-siliculosus-1a_M_contig95.17527.1|Name=mRNA_E-siliculosus-1a_M_contig95.17527.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=256bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:544428..544683- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTTGCCGATCCTCAGTCAGACGAAGGGCAAGAAAACGGGGTGTTCTCT
CGGTGGACGGGTCCACGAGGATTATGAGGTGGGGCGCTGGGATATGGTGC
TCGCGTCTGAAGAGCTCTTGTTGTATGTACGGGGCATAGCTGAGTCAGGA
TCGCCCTTTCGCCTCTGCTGCTAGCCGCATACAAGCTAGGTACGGTGACA
GCTCTCGCTGCGGCCGCTCTGGTTTCGCGCTTCCTCAACCATTAGCATTT
TTCGTT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:544428..544683-

>mRNA_E-siliculosus-1a_M_contig95.17527.1 ID=mRNA_E-siliculosus-1a_M_contig95.17527.1|Name=mRNA_E-siliculosus-1a_M_contig95.17527.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=348bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:544428..544683- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTTGCCGATCCTCAGTCAGACGAAGGGCAAGAAAACGGGGTGTTCTCT
CGGTGGACGGGTCCACGAGGATTATGAGGTGGGGCGCTGGGATATGGTGC
TCGCGTCTGAAGAGCTCTTGTTGTATGTACGGGGCATAGCTGAGTCAGGA
TCGCCCTTTCGCCTCTGCTGCTAGATGTTGCCGATCCTCAGTCAGACGAA
GGGCAAGAAAACGGGGTGTTCTCTCGGTGGACGGGTCCACGAGGATTATG
AGGTGGGGCGCTGGGATATGGTGCTCGCGTCTGAAGAGCTCTTGTTGTAT
GTACGGGGCATAGCTGAGTCAGGATCGCCCTTTCGCCTCTGCTGCTAG
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