prot_E-siliculosus-1a_M_contig95.17517.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_M_contig95.17517.1
Unique Nameprot_E-siliculosus-1a_M_contig95.17517.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length539
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig95.17517.1 vs. uniprot
Match: D7G1W0_ECTSI (tRNA_int_end_N2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1W0_ECTSI)

HSP 1 Score: 937 bits (2423), Expect = 0.000e+0
Identity = 488/538 (90.71%), Postives = 506/538 (94.05%), Query Frame = 0 
Query:    1 MAMVRAAASAAAXSSDATEWAEGLGGGQGDNPGRPGRQTCWAVWHEELAVFEVPQPRGDSLRSMGTTWRSRLMLHAEEGLWLVERGMLAVHPFSPAPKKSYDPTGTASPAAPSSGIGRKDDARGMHDETDISSSTPEIAQEMRNIEHEEKENEGGGQEGLTDDVDSAAGKNACPIPPRAELSPIDSGVILTGEPQHSLDPVAFGETAWTGQGGGCRKAPIAAKEGRQRAGCKRSRPGQGRGERVVRPAPALSVSVSTLHETVLSRAGVPWECYRAYAELKRRSYVVRRQPEDTVGHDETAPRAAPLSWFQGTGATTTSNNKLITAASHTSSPSSSLPVTFHVYNNPSGCSSSFRKRDPGPPDALLVVCRFGEPMPDHRSLVALVELHANMQMEMSTSQQWRRRGREDRTAGVVSGLGPDEATPDRDSGSQEVPTSGLESERVTSSGGQESGQKGSLLDEDRQNRQAGTVPDQEKGLDGGRTRGRLTTEGGESSTLALSEGVEKLSTPGIKLAVVSGEAQVQLFDVGLHDAREAAELSS 538
            MAMVRA ASA+A SS ATEWAEGLGGGQGD+PGRPGRQTCWAVWHEELAVFEV QPRGDSLRSMGTTWRSRLMLHAEEGLWLVERGMLAVHPFSPAPKK++DPTGTASPAAPSSGIGRK+DAR MHDET ISSSTPEIAQEMRNIEHEEKENEGGGQEGLTDDVDS+AGKNA PIPPRAELSPIDSGVILTGE QHSLDPVA GETA TGQGGGCRK P AAKEGRQRAGCKRSRPGQGRGERVVRPA ALSVSVSTL+E VL+RAGVPWECYR YAELKRRSYVVRRQPEDTVGHD+TAPRAAPLSWFQGTGAT TSNNKLITAA+HTSSPSSSLPVTFHVY+NPSGCSSSFRKRDPGPPDAL+VVCRFG+PMPDHRSLVALVELHANMQM+MS SQQWRRRGRED TAGVVS LGPDEA PDR SGS EVPTSGLESERVTS GG+ESGQKGSLLDEDRQ RQA T+PDQ+KGLDGGRTRGRLTTEG    TLA S+GVEKLSTPGIKLAVVSGEAQVQLFDVGLHDA EAAEL S
Sbjct:    1 MAMVRATASASAASSAATEWAEGLGGGQGDDPGRPGRQTCWAVWHEELAVFEVLQPRGDSLRSMGTTWRSRLMLHAEEGLWLVERGMLAVHPFSPAPKKNHDPTGTASPAAPSSGIGRKNDAREMHDETGISSSTPEIAQEMRNIEHEEKENEGGGQEGLTDDVDSSAGKNARPIPPRAELSPIDSGVILTGESQHSLDPVASGETARTGQGGGCRKVPTAAKEGRQRAGCKRSRPGQGRGERVVRPAAALSVSVSTLYEMVLARAGVPWECYRTYAELKRRSYVVRRQPEDTVGHDDTAPRAAPLSWFQGTGATKTSNNKLITAANHTSSPSSSLPVTFHVYSNPSGCSSSFRKRDPGPPDALVVVCRFGDPMPDHRSLVALVELHANMQMKMSMSQQWRRRGREDSTAGVVSDLGPDEAAPDRGSGSPEVPTSGLESERVTSGGGRESGQKGSLLDEDRQKRQARTLPDQKKGLDGGRTRGRLTTEGSGGRTLAFSKGVEKLSTPGIKLAVVSGEAQVQLFDVGLHDALEAAELPS 538
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig95.17517.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1W0_ECTSI0.000e+090.71tRNA_int_end_N2 domain-containing protein n=2 Tax=... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024336tRNA-splicing endonuclease, subunit Sen54, N-terminalPFAMPF12928tRNA_int_end_N2coord: 37..90
e-value: 9.3E-10
score: 38.5
IPR024337tRNA-splicing endonuclease, subunit Sen54PANTHERPTHR21027TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN54coord: 41..412
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..538
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..13

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig95contigE-siliculosus-1a_M_contig95:470429..472379 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig95.17517.1mRNA_E-siliculosus-1a_M_contig95.17517.1Ectocarpus siliculosus Ec864m_EcPH12_78m malemRNAE-siliculosus-1a_M_contig95 470342..472717 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_M_contig95.17517.1 ID=prot_E-siliculosus-1a_M_contig95.17517.1|Name=mRNA_E-siliculosus-1a_M_contig95.17517.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=539bp
MAMVRAAASAAAASSDATEWAEGLGGGQGDNPGRPGRQTCWAVWHEELAV
FEVPQPRGDSLRSMGTTWRSRLMLHAEEGLWLVERGMLAVHPFSPAPKKS
YDPTGTASPAAPSSGIGRKDDARGMHDETDISSSTPEIAQEMRNIEHEEK
ENEGGGQEGLTDDVDSAAGKNACPIPPRAELSPIDSGVILTGEPQHSLDP
VAFGETAWTGQGGGCRKAPIAAKEGRQRAGCKRSRPGQGRGERVVRPAPA
LSVSVSTLHETVLSRAGVPWECYRAYAELKRRSYVVRRQPEDTVGHDETA
PRAAPLSWFQGTGATTTSNNKLITAASHTSSPSSSLPVTFHVYNNPSGCS
SSFRKRDPGPPDALLVVCRFGEPMPDHRSLVALVELHANMQMEMSTSQQW
RRRGREDRTAGVVSGLGPDEATPDRDSGSQEVPTSGLESERVTSSGGQES
GQKGSLLDEDRQNRQAGTVPDQEKGLDGGRTRGRLTTEGGESSTLALSEG
VEKLSTPGIKLAVVSGEAQVQLFDVGLHDAREAAELSS*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024337tRNA_splic_suSen54
IPR024336tRNA_splic_suSen54_N