mRNA_E-siliculosus-1a_M_contig95.17513.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig95.17513.1
Unique NamemRNA_E-siliculosus-1a_M_contig95.17513.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig95.17513.1 vs. uniprot
Match: D7G1V6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1V6_ECTSI)

HSP 1 Score: 277 bits (708), Expect = 1.920e-85
Identity = 140/153 (91.50%), Postives = 143/153 (93.46%), Query Frame = 2 
Query:  539 MREALLAALGGISQDQFFRACGTAGGLLLAGAQLPQIYHVTKRGKSRDISYMYQFIFAGGMVCFLIYYGYNDLWAVFIPSCLSLVCMCYLIGLKAYLEVMKPKRTVATQMINDLLRDDD-GLDXXXXLDRPLLGGASEEKNGEDEFIAYTAPG 994
            MREALLAALGGISQDQ FRACGTAGGLLLAGAQLPQIYHVTKRGKSRDISYMYQFIFAGGM+CFLIYYGYN LWAVF+PSCLSLVCMCYLIGLKAYLE MKPKRTVATQMINDLLRDDD G D    LDRPLLGGASEEK G+DEFIAYTAPG
Sbjct:    1 MREALLAALGGISQDQLFRACGTAGGLLLAGAQLPQIYHVTKRGKSRDISYMYQFIFAGGMICFLIYYGYNGLWAVFVPSCLSLVCMCYLIGLKAYLEEMKPKRTVATQMINDLLRDDDDGFDDLDGLDRPLLGGASEEKKGDDEFIAYTAPG 153
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BLAST of mRNA_E-siliculosus-1a_M_contig95.17513.1 vs. uniprot
Match: D7G1V2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1V2_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 7.380e-13
Identity = 38/93 (40.86%), Postives = 56/93 (60.22%), Query Frame = 2 
Query:  581 DQFFRACGTAGGLLLAGAQLPQIYHVTKRGKSRDISYMYQFIFAGGMVCFLIYYGYNDLWAVFIPSCLSLVCMCYLIGLKAYLEVMKPKRTVA 859
            D  +   G  GG ++A + +PQ+Y VT R K+ DIS+ YQ +F  G+V FL++YGY +LW +F P+  S++   YL  LK  LE    + T A
Sbjct:    3 DTVYDVMGFLGGCVMAASLVPQVYRVTVRKKAADISHTYQVVFVTGIVMFLVFYGYYELWELFFPALASMMLQIYLAVLKIRLERCPRRHTAA 95
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BLAST of mRNA_E-siliculosus-1a_M_contig95.17513.1 vs. uniprot
Match: D7G1V3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1V3_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 2.770e-12
Identity = 45/125 (36.00%), Postives = 72/125 (57.60%), Query Frame = 2 
Query:  572 ISQDQFFRACGTAGGLLLAGAQLPQIYHVTKRGKSRDISYMYQFIFAGGMVCFLIYYGYNDLWAVFIPSCLSLVCMCYLIGLKAYLEV--MKPKRTV--ATQMINDLLRDDDGLDXXXXLDRPLL 934
            ++ D  +   G +GGL++A A +PQ+  V +R +S DISY +  +F GG+V FL YYGY +LW VF P+ LS+     L+ LK  LE   ++P+  V  A+ ++ D   D + +       +PL+
Sbjct:    1 MASDVPYNLMGASGGLIVAFAFVPQLARVIRRKQSADISYAHLMVFVGGLVMFLAYYGYYELWEVFFPALLSMSFAILLLALKIRLEEFPLRPRAAVPGASVVVGDTSGDGERMANTSSDAQPLM 125
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BLAST of mRNA_E-siliculosus-1a_M_contig95.17513.1 vs. uniprot
Match: A0A6H5KU65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU65_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 7.010e-12
Identity = 38/98 (38.78%), Postives = 59/98 (60.20%), Query Frame = 2 
Query:  572 ISQDQFFRACGTAGGLLLAGAQLPQIYHVTKRGKSRDISYMYQFIFAGGMVCFLIYYGYNDLWAVFIPSCLSLVCMCYLIGLKAYLEV--MKPKRTVA 859
            ++ D  +   G  GGL++A A  PQ+  V +R +S DISY +  +F GGMV FL+YYGY +LW +F PS +S+  +  L+  K  +E   ++P+   A
Sbjct:    1 MTSDVPYNLMGVCGGLIVACAYAPQLARVIRRKQSADISYTHLMVFMGGMVMFLVYYGYYELWELFFPSLISMSFVILLLAAKIRMEEFPLRPRAAAA 98
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BLAST of mRNA_E-siliculosus-1a_M_contig95.17513.1 vs. uniprot
Match: A0A3R7HBR8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7HBR8_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.850e-5
Identity = 29/84 (34.52%), Postives = 48/84 (57.14%), Query Frame = 2 
Query:  581 DQFFRACGTAGGLLLAGAQLPQIYHVTKRGKSRDISYMYQFIFAGGMVCFLIYYGYNDLWAVFIPSCLSLVCMCYLIGLKAYLE 832
            +  +   G  G  L++ A +PQI  V +   ++DIS ++QF+FA G++C  IY     LW ++IPS L L+    L+ +K Y +
Sbjct:    5 ETLYDTLGLVGSFLVSAALVPQILKVYRSKSAKDISSVFQFVFAVGVLCITIYGLGEGLWPIWIPSTLELLAGIILLVMKHYYD 88
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig95.17513.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G1V6_ECTSI1.920e-8591.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G1V2_ECTSI7.380e-1340.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G1V3_ECTSI2.770e-1236.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KU65_9PHAE7.010e-1238.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A3R7HBR8_9STRA1.850e-534.52Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig95contigE-siliculosus-1a_M_contig95:438067..441624 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size465
Model size2392
Exons3
Ec32 orthologEc-07_003960.1
Ec32 ortholog descriptionPQ-loop repeat
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGs2CZ06@1,2S7J2@2759
EggNOG free text desc.PQ loop repeat
Seed eggNOG ortholog2880.D7G1V2
Seed ortholog evalue2.9e-12
Seed ortholog score78.6
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig95.17513.1prot_E-siliculosus-1a_M_contig95.17513.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig95 439456..441086 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936519.2147613-UTR-E-siliculosus-1a_M_contig95:438066..4394551622936519.2147613-UTR-E-siliculosus-1a_M_contig95:438066..439455Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 438067..439455 -
1696251114.2737322-UTR-E-siliculosus-1a_M_contig95:438066..4394551696251114.2737322-UTR-E-siliculosus-1a_M_contig95:438066..439455Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 438067..439455 -
1622936519.2778692-UTR-E-siliculosus-1a_M_contig95:441086..4416241622936519.2778692-UTR-E-siliculosus-1a_M_contig95:441086..441624Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 441087..441624 -
1696251114.3196774-UTR-E-siliculosus-1a_M_contig95:441086..4416241696251114.3196774-UTR-E-siliculosus-1a_M_contig95:441086..441624Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 441087..441624 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936519.2312098-CDS-E-siliculosus-1a_M_contig95:439455..4397581622936519.2312098-CDS-E-siliculosus-1a_M_contig95:439455..439758Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 439456..439758 -
1696251114.2896292-CDS-E-siliculosus-1a_M_contig95:439455..4397581696251114.2896292-CDS-E-siliculosus-1a_M_contig95:439455..439758Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 439456..439758 -
1622936519.245878-CDS-E-siliculosus-1a_M_contig95:440145..4402161622936519.245878-CDS-E-siliculosus-1a_M_contig95:440145..440216Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 440146..440216 -
1696251114.2982998-CDS-E-siliculosus-1a_M_contig95:440145..4402161696251114.2982998-CDS-E-siliculosus-1a_M_contig95:440145..440216Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 440146..440216 -
1622936519.2595768-CDS-E-siliculosus-1a_M_contig95:440995..4410861622936519.2595768-CDS-E-siliculosus-1a_M_contig95:440995..441086Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 440996..441086 -
1696251114.3077998-CDS-E-siliculosus-1a_M_contig95:440995..4410861696251114.3077998-CDS-E-siliculosus-1a_M_contig95:440995..441086Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 440996..441086 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig95.17513.1

>prot_E-siliculosus-1a_M_contig95.17513.1 ID=prot_E-siliculosus-1a_M_contig95.17513.1|Name=mRNA_E-siliculosus-1a_M_contig95.17513.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=155bp
MREALLAALGGISQDQFFRACGTAGGLLLAGAQLPQIYHVTKRGKSRDIS
YMYQFIFAGGMVCFLIYYGYNDLWAVFIPSCLSLVCMCYLIGLKAYLEVM
KPKRTVATQMINDLLRDDDGLDGLDGLDRPLLGGASEEKNGEDEFIAYTA
PGGK*
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mRNA from alignment at E-siliculosus-1a_M_contig95:438067..441624-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig95.17513.1 ID=mRNA_E-siliculosus-1a_M_contig95.17513.1|Name=mRNA_E-siliculosus-1a_M_contig95.17513.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3558bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:438067..441624- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CACACCAAAGCTGCACCGAAGTAACGCCCCAAGTGTTGCTCCCCTTCTGA
GTCTCGCGGCCACCCGGACACACACGTGGGTCGTAAAACGAGTGCGTCGG
GTGCCTTGTTTTGAATCGCAGACAGCTGCGTTGTGCATACACGGCAGCAG
CAGTAGCACACGGCCTTTGGCCGACTATCGAGCACCGTCTGGTCCTGCGA
GCGGCATACCTCTGAAGCGGTATTGCTCAGAAGCTTGCCTCATCATCGCC
CGCTGTGTTCGTTGGTGTGCTGGACCCGGATATCACGCCTGCTCTGGACA
TCGAGAAGAGGAAGGCAAGGAGGAGGACGAGAACGCCACGTGGGATCATA
CTGCTGCTGTCGTGTTGGTGTACACCAACACGGAGAGCAGCACAGCAGTA
CTGTAATAGCATCAGAGGGGACACCACGACAGAAGCCTTCCCACGTGCTA
ACCTCACCGGCTGTTGGTACCATTGGAGCAGCTCTGTGCTGGAGTACCGA
AGGGCCTGGAGAGCGCACGGACAACCAAGACCTCCACGATGCGTGAAGCC
CTTCTTGCGGCGTTGGGGGGCATCTCCCAAGACCAGTTTTTCAGAGCTTG
CGGGACGGCGGGCGGACTGCTTCTCGCCGGTACGGATAACATGATGAATA
TGACCGACCGTTAATCTCGAATTGCTTGCCAAATAGGCTGCTGCCACGTG
TTCGCTGCGCAGTGTTTTGCCTCTGTTGTGTCTCTCCTCTTTCGAGCTCG
TTCCTATTTTCCGGTTGGAAATGATCTACCCAGTTTGTTGGTACAACCGC
CGCGTCTCTCAAATCGATGCAGCAGAGGATCATGATTCCACGACAAGTGT
GGCGTGCTCATCTGATCCGTCGCATGGAACACCGGAGTGTGTCCAGCGGT
CTATCCCGTGTAAGGTTTACGGGCCTTACTGCTCGTGTTGTAAGTATAGA
TTAGTCGATACCGTAGGTGACATGACACAAGATACCCCCTGGACCGATTT
TCAAAGCTCGATTACTCCACGACGAACAGGATGCCAAAAACCAAACGATA
CGCTTATCGGACCGAATCTCAACGATATGGTTCCAACGCCGCCGTTTAGG
CAGCACCACTCTCCGCTGCTGTGGAGTATTCGCTCTTTGAAAGTCGGTCC
AGGAGGTGTGATATCTTGTGTCACCTACATATATATCTGTGGAAATCGAG
GTCTAGGATGGTTTCGGTTGAGTCGGCATTGTTGCTTGGGTTCCGTGATA
ACACGGTGTGTATTGTGAACCTTCGTTTGCAGGGAACCTTGCTGACGTGT
GTTCCGTGTACGGTTCTCGTTTCATGCCTTGCCTATGTACCCCTCGAAGC
TGATGTCTACGTAACCCTACCTCCCCCGTTTTCTGTGCCCCCCCCTTCAA
CGAAACAGGAGCACAGTTGCCACAGATTTACCATGTCACGAAGCGAGGGA
AGTCTCGGGACATCAGCTACATGTACCAGGTGCGACGAAGCAGTAGGAGC
AGAACGCGCCAGCACTCCAAGGACACAGTAGCTGGGCTGTCTCTTGCTCC
TCACTATCGCCATCACGGAGGGTGCGTCGAGGAGCGGGGCTGGAGACTAC
AGTAGTGCGAGGTCTCCCTTGCGTGCAGCATGTGTTTTGCTTACGTTTTT
TTTTCTCTCTCCAAAGTATACACCATGGGTTCGCCTCTGCCAGGACGACG
GCCTAGCAACAATCAGGTTTGAACAGCCACCCCCAACCCCTTCTCCACCC
GTCATTCCTCGCAATCGACAGAAATGAACACCCGCCCTTTACCCATACCC
GTTTGTCTGTTCCGCCACCACCACCCCTTATCTTGTGCTGTATCTCCCTC
CCTCTCTCTCTGGCAGTTCATTTTCGCAGGCGGGATGGTCTGCTTCCTCA
TCTACTACGGCTACAACGACCTCTGGGCGGTGTTCATCCCGTCCTGCTTG
TCCCTCGTCTGCATGTGCTACCTCATCGGCCTCAAGGCCTACCTGGAGGT
GATGAAGCCCAAGCGCACCGTCGCGACGCAGATGATCAACGACCTTCTGC
GAGACGACGATGGCCTCGACGGCCTCGACGGCTTGGATCGCCCGCTGCTC
GGCGGGGCATCCGAGGAGAAGAATGGGGAAGACGAGTTTATCGCCTACAC
GGCACCGGGGGGCAAATAAACTATTTAGAAAGGCGTTGGTTCTTTGGCGG
GGGGAGGGTGCTCGCCGTTGCCATTTTGCCGTTGGTCACCCACCTCTCTT
ACGAAAGGGAGCACCGTTCGCCGTTCCTTTGGGGGGAGGAATGTGTAGAG
GCGTTGTTGATACGTGGCGAGGCGAGAAGGTGTGGGCGCGGCAGCACGTT
GTTGGGAGGCGGCAACGGCACTTTGCCCGGAACGGCGGCCCCGAGATGAT
GTGTCCATTGCTAGACGGCAACATTCACGGCAGCCATGGAACGCCCGCCT
GCTAGGCCTAGCGGGAGAAAAGTAGCCACCGGGGACACACGGTGAAAGGA
AGGTTGACGGGAAGACGAGCAGTGCCAGCAGCGGGGCCTGGTGCCCCGGG
GGACGGGCTAGGTAATAACCAGTCCTACGTCGAGCCATCACGTGCTGTCC
CCCGGGAAATATGGCGAGAGGAACAACGCGTCGCAGCCTTTGGAATAGGC
ATGGCTCCGCGAAATGGGTTGCCACGTTGCCACGCGATCGGGGAGGAGAG
GGGCAAGGCGGCGGGCGACATTGCACCCTCGGAGATGTTTTAGCGCCTCA
CACACGGCTCACGGCTGCAGTCACCGCGCAGTACAGAAGCTTGTTTTTTG
TCGCTGCCCCGCGTAGTTTTCCTGCAACGTGAACCCGACCTTCCTGCCAC
AAGGCTTTGCGTTGCGAAACGCACAGGATGCAGACGCGGGTTCCACGACA
CGGTGTGCTATAAACTATGTGGTAGCGATGATGACAGCGATATCGCAATT
TCTCGATAGTCCAGGAGCCAGCGTGTTGCTGTGGGCCCCGAGCAATGCCG
ACCGAGCATTGCACGTCGAATCGGTTGACTGACAATGCTTTCCGTCACGT
TCTGAAACCACGGAGCCCCCCCCCGCTGAATGTAGCGTTTCAGGCGAAGT
ATGTGTTTTTGGGTTGGGGTTGTTCGTGCATTGGGTCCGGACCTCTCTTT
CGGCCGGCAAGGATAAGGATCGGAGGAGGTTGGGGGTGTCATCTATTTTG
CTGTTGTTGTGGAAGCTACTTTTGTCGTGTCTCCTGTTGCCTTTTGTGCA
CGACCATACAGCTTGTTTCTGTGCTTTTCCATTTTTCTCTTCTTTGTGGC
GTGTTCGAAAGACCATGCGGTCCCTCTGGTGCTTCATGTTACGGCAGAAT
ACGGGAGTCAAGCGGCAAGAACAGTCGTGAGTCTTGCTGTATGGCATGCG
CCACCTTTGCCGGTGCGCACCGACAGACTTGCGGCAGAGGCGCAACTCGT
GCGTGGTGGCAGCAGTGTCGTTATTTTTGTTGTTGTGCCCGATTGTTGAA
TGGACTGAAAAAATAAATCGCAAGTGTTTGAATATGTCAACGACTCGGCA
GCGACCAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:438067..441624-

>mRNA_E-siliculosus-1a_M_contig95.17513.1 ID=mRNA_E-siliculosus-1a_M_contig95.17513.1|Name=mRNA_E-siliculosus-1a_M_contig95.17513.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=930bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:438067..441624- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCGTGAAGCCCTTCTTGCGGCGTTGGGGGGCATCTCCCAAGACCAGTT
TTTCAGAGCTTGCGGGACGGCGGGCGGACTGCTTCTCGCCGATGCGTGAA
GCCCTTCTTGCGGCGTTGGGGGGCATCTCCCAAGACCAGTTTTTCAGAGC
TTGCGGGACGGCGGGCGGACTGCTTCTCGCCGGAGCACAGTTGCCACAGA
TTTACCATGTCACGAAGCGAGGGAAGTCTCGGGACATCAGCTACATGTAC
CAGGAGCACAGTTGCCACAGATTTACCATGTCACGAAGCGAGGGAAGTCT
CGGGACATCAGCTACATGTACCAGTTCATTTTCGCAGGCGGGATGGTCTG
CTTCCTCATCTACTACGGCTACAACGACCTCTGGGCGGTGTTCATCCCGT
CCTGCTTGTCCCTCGTCTGCATGTGCTACCTCATCGGCCTCAAGGCCTAC
CTGGAGGTGATGAAGCCCAAGCGCACCGTCGCGACGCAGATGATCAACGA
CCTTCTGCGAGACGACGATGGCCTCGACGGCCTCGACGGCTTGGATCGCC
CGCTGCTCGGCGGGGCATCCGAGGAGAAGAATGGGGAAGACGAGTTTATC
GCCTACACGGCACCGGGGGGCAAATAATTCATTTTCGCAGGCGGGATGGT
CTGCTTCCTCATCTACTACGGCTACAACGACCTCTGGGCGGTGTTCATCC
CGTCCTGCTTGTCCCTCGTCTGCATGTGCTACCTCATCGGCCTCAAGGCC
TACCTGGAGGTGATGAAGCCCAAGCGCACCGTCGCGACGCAGATGATCAA
CGACCTTCTGCGAGACGACGATGGCCTCGACGGCCTCGACGGCTTGGATC
GCCCGCTGCTCGGCGGGGCATCCGAGGAGAAGAATGGGGAAGACGAGTTT
ATCGCCTACACGGCACCGGGGGGCAAATAA
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