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Homology
BLAST of mRNA_E-siliculosus-1a_M_contig95.17510.1 vs. uniprot
Match: D7G1V2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1V2_ECTSI) HSP 1 Score: 217 bits (553), Expect = 2.170e-66 Identity = 113/123 (91.87%), Postives = 117/123 (95.12%), Query Frame = 3
Query: 210 SDTVYDVMGFLGGAVMAAALVPQVYRVTVRKKAADISHVYQAVFVTGMVMFLVFYGYYELWELFFPTLASMMLQIYLAVLKLRLERCPRRHTAATPSTVASETPGEGATLDNGSSESSPLLKS 578
SDTVYDVMGFLGG VMAA+LVPQVYRVTVRKKAADISH YQ VFVTG+VMFLVFYGYYELWELFFP LASMMLQIYLAVLK+RLERCPRRHTAA PSTVASETPGEGATLDNGSSE +PLLKS
Sbjct: 2 SDTVYDVMGFLGGCVMAASLVPQVYRVTVRKKAADISHTYQVVFVTGIVMFLVFYGYYELWELFFPALASMMLQIYLAVLKIRLERCPRRHTAAAPSTVASETPGEGATLDNGSSERTPLLKS 124
BLAST of mRNA_E-siliculosus-1a_M_contig95.17510.1 vs. uniprot
Match: A0A6H5KU65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU65_9PHAE) HSP 1 Score: 116 bits (291), Expect = 9.140e-28 Identity = 65/127 (51.18%), Postives = 85/127 (66.93%), Query Frame = 3
Query: 204 MTSDTVYDVMGFLGGAVMAAALVPQVYRVTVRKKAADISHVYQAVFVTGMVMFLVFYGYYELWELFFPTLASMMLQIYLAVLKLRLERCPRRHTAATP--STVASETPGEGATLDNGSSESSPLLKS 578
MTSD Y++MG GG ++A A PQ+ RV RK++ADIS+ + VF+ GMVMFLV+YGYYELWELFFP+L SM I L K+R+E P R AA S +TPG+G + N SS++ PL+ S
Sbjct: 1 MTSDVPYNLMGVCGGLIVACAYAPQLARVIRRKQSADISYTHLMVFMGGMVMFLVYYGYYELWELFFPSLISMSFVILLLAAKIRMEEFPLRPRAAAAGASVAVGDTPGDGERMTNTSSDAQPLMSS 127
BLAST of mRNA_E-siliculosus-1a_M_contig95.17510.1 vs. uniprot
Match: D7G1V3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1V3_ECTSI) HSP 1 Score: 116 bits (290), Expect = 1.270e-27 Identity = 66/127 (51.97%), Postives = 85/127 (66.93%), Query Frame = 3
Query: 204 MTSDTVYDVMGFLGGAVMAAALVPQVYRVTVRKKAADISHVYQAVFVTGMVMFLVFYGYYELWELFFPTLASMMLQIYLAVLKLRLERCPRRHTAATP--STVASETPGEGATLDNGSSESSPLLKS 578
M SD Y++MG GG ++A A VPQ+ RV RK++ADIS+ + VFV G+VMFL +YGYYELWE+FFP L SM I L LK+RLE P R AA P S V +T G+G + N SS++ PL+ S
Sbjct: 1 MASDVPYNLMGASGGLIVAFAFVPQLARVIRRKQSADISYAHLMVFVGGLVMFLAYYGYYELWEVFFPALLSMSFAILLLALKIRLEEFPLRPRAAVPGASVVVGDTSGDGERMANTSSDAQPLMSS 127
BLAST of mRNA_E-siliculosus-1a_M_contig95.17510.1 vs. uniprot
Match: D8LCW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCW9_ECTSI) HSP 1 Score: 68.9 bits (167), Expect = 1.300e-9 Identity = 32/83 (38.55%), Postives = 55/83 (66.27%), Query Frame = 3
Query: 222 YDVMGFLGGAVMAAALVPQVYRVTVRKKAADISHVYQAVFVTGMVMFLVFYGYYELWELFFPTLASMMLQIYLAVLKLRLERC 470
++++GF+GG V+A AL+PQ+Y RK ADIS+++QAV+ G++ +++Y ++ LW +F+P +YL LK+ E C
Sbjct: 8 FNIIGFVGGVVLATALLPQIYLAHSRKSTADISYLWQAVYTVGLLTLMIYYFHFRLWAVFYPMAFEFSSLMYLTGLKIYYEVC 90
BLAST of mRNA_E-siliculosus-1a_M_contig95.17510.1 vs. uniprot
Match: A0A1E7FTB5_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FTB5_9STRA) HSP 1 Score: 59.7 bits (143), Expect = 2.430e-7 Identity = 29/81 (35.80%), Postives = 50/81 (61.73%), Query Frame = 3
Query: 225 DVMGFLGGAVMAAALVPQVYRVTVRKKAADISHVYQAVFVTGMVMFLVFYGYYELWELFFPTLASMMLQIYLAVLKLRLER 467
D++GF+GG ++ +L+PQVY+ K A DIS+ YQA+++ G + L++ LW ++ P + L I L V+K+ +R
Sbjct: 7 DIIGFVGGTTISLSLIPQVYKTFHSKSAGDISYYYQAIYIVGCTLTLIYAAALRLWPVYIPITLELTLIISLTVMKVIFDR 87
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Start | 1 |
| Stop | 1 |
| Cds size | 381 |
| Model size | 1342 |
| Exons | 3 |
| Ec32 ortholog | Ec-07_004010.1 |
| Ec32 ortholog description | conserved unknown protein |
| Hectar predicted targeting category | other localisation |
| Best eggNOG OG | NA|NA|NA |
| Best tax level | Eukaryota |
| COG Functional cat. | S |
| EggNOG OGs | 2CZ06@1,2S7J2@2759 |
| EggNOG free text desc. | PQ loop repeat |
| Seed eggNOG ortholog | 2880.D7G1V2 |
| Seed ortholog evalue | 1.5e-54 |
| Seed ortholog score | 218.8 |
| Taxonomic scope | Eukaryota |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622936518.5190492-UTR-E-siliculosus-1a_M_contig95:415573..415776 | 1622936518.5190492-UTR-E-siliculosus-1a_M_contig95:415573..415776 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig95 415574..415776 + |
| 1696251114.0727189-UTR-E-siliculosus-1a_M_contig95:415573..415776 | 1696251114.0727189-UTR-E-siliculosus-1a_M_contig95:415573..415776 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig95 415574..415776 + |
| 1622936518.6746655-UTR-E-siliculosus-1a_M_contig95:419178..419936 | 1622936518.6746655-UTR-E-siliculosus-1a_M_contig95:419178..419936 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig95 419179..419936 + |
| 1696251114.1439278-UTR-E-siliculosus-1a_M_contig95:419178..419936 | 1696251114.1439278-UTR-E-siliculosus-1a_M_contig95:419178..419936 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig95 419179..419936 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622936518.6274214-CDS-E-siliculosus-1a_M_contig95:415776..415905 | 1622936518.6274214-CDS-E-siliculosus-1a_M_contig95:415776..415905 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig95 415777..415905 + |
| 1696251114.0857737-CDS-E-siliculosus-1a_M_contig95:415776..415905 | 1696251114.0857737-CDS-E-siliculosus-1a_M_contig95:415776..415905 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig95 415777..415905 + |
| 1622936518.6411822-CDS-E-siliculosus-1a_M_contig95:418379..418433 | 1622936518.6411822-CDS-E-siliculosus-1a_M_contig95:418379..418433 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig95 418380..418433 + |
| 1696251114.1015801-CDS-E-siliculosus-1a_M_contig95:418379..418433 | 1696251114.1015801-CDS-E-siliculosus-1a_M_contig95:418379..418433 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig95 418380..418433 + |
| 1622936518.6563742-CDS-E-siliculosus-1a_M_contig95:418980..419178 | 1622936518.6563742-CDS-E-siliculosus-1a_M_contig95:418980..419178 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig95 418981..419178 + |
| 1696251114.1284745-CDS-E-siliculosus-1a_M_contig95:418980..419178 | 1696251114.1284745-CDS-E-siliculosus-1a_M_contig95:418980..419178 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig95 418981..419178 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig95.17510.1 >prot_E-siliculosus-1a_M_contig95.17510.1 ID=prot_E-siliculosus-1a_M_contig95.17510.1|Name=mRNA_E-siliculosus-1a_M_contig95.17510.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=127bp
MTSDTVYDVMGFLGGAVMAAALVPQVYRVTVRKKAADISHVYQAVFVTGM VMFLVFYGYYELWELFFPTLASMMLQIYLAVLKLRLERCPRRHTAATPST VASETPGEGATLDNGSSESSPLLKSA* back to topmRNA from alignment at E-siliculosus-1a_M_contig95:415574..419936+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_M_contig95.17510.1 ID=mRNA_E-siliculosus-1a_M_contig95.17510.1|Name=mRNA_E-siliculosus-1a_M_contig95.17510.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=4363bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:415574..419936+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male) GAACCATGGAACCATGATGGCGGCGCGTCGCCTACCGTGCCGTGCAAGGC
GGGAGGGTCGTACAATGGCTGCAAGCGAAGGCAGGTGCATCTGTCCTTCT
GGCATCCCTACACGCACAGGCAGACCCACCGGCCGGAGATATAGTCGGCG
CTGCTGCTATTCAAGCAGTACATCTGTCCTTGATCCTCCCACTGGCAATA
GCGATGACGTCCGATACAGTCTATGACGTGATGGGCTTTCTCGGAGGTGC
GGTCATGGCCGCGGCGTTGGTGCCTCAAGTTTACCGCGTCACCGTGCGAA
AGAAAGCCGCTGATATAAGCCACGTGTACCAGGTGGGTGGGTGTGCTGCC
AACTCCATGTATGATGTCTCCAATAAAAATAGTATCGACCGCGCTCTAAC
CGGCTGACCATTGATTAGAAGTCAAGTGTGTGTATTCGTCGCATCTATTC
TGGCGCCAGTTCACAGGTTTCGGCGTATATCTAATATATATACCAGACGT
ATCCAACCAAGGGGCGCACGAAAAATTATCCCTGCTGTTTAGGGGGGCAG
AAGACGAATTTTGTTGTTGACTGATTTTGAAAACAAACGCCAGAGCACCA
GAAATTGCACAACAGACAACCTAGACCACCAGTAGAAGGCACCGCGAAAA
ACAGAAATCGTTGATTCTCGCACTGGGCGGCAGTAGAGGCTATAATAAAA
CATACATTTCACGCGTCTACCTCCACACGCCTCCTTTGAAATCAAGATAT
TCTAAATTCTAGTCAAAAGAGCCACCACGGAAGGCGCTCAAACAAGGTCA
ATTTTGAGTGTTCGGTGTCGCATATTGTCATCAGTAGAGGACATCATGAA
GAGGCGTCGTGCGTGCTGGCACGTTCAGGTTTGCTACTGGAGCTGAAATA
TCGAAATATCGAAGGTCGCAGCAGCCTCTGAAAGCAGTCCGAAATGTGCG
CCGGAACCAAGCGGCATCCAACCTTTGTCACAGCCGTGCTCGCTGCCACT
GACCCCCATCTCCTGATCTGCGGGTTTACAGCAGTAGCTGATGCCGCTAG
GTGGTGAACTGGCTGTGTGTTGCCGTCACTGTTGCTGCAGCCTGTCTGTG
GTTATTCTACTACATTACAATGCAGATGCAGTGTTGACATGCGAGCTTGT
CACGAAACTCATTTTTTCGTTCTAGACCAAGTAAGGTAAATGAGGACATG
TGGTATTTGTGTTGGTCTGCTGTGTGGGTAGAGGATGGTCTGCTGTACCT
GCTGCTGTTGCTGCAATGTGTGCTGCTGTCCTGCTGTGCTTGTGCTGTAT
GAGGGGGGCCCGCAGGTAGGTCGATTTAACCCCCCCCTCGCTTGGTGATG
TGAGAACCCGGCGTGCTCCCGTCCCGGCTTTGTAGGGCTACGAGGTCAAT
GGTCTAGCGACTACGGCATGCACGACTATGAGTACACCCCCCCCCTCACG
TCAATGGTCAAATGACTACGGCAAGCAACAAATGAGTACGCCCCCCCCCC
CTCCAGTGAGGGGGCTCCGGAACTGAAAAAAACGGAAAATAACTGGGAAC
TTCCAGGGCACCTAACCGCTGAACGTTGTGAATGGTGATAACCGGTACCC
GGTTATCGACATCCCTGTTTTACTGCTGCTGCTGATTTCGAGATTAAATT
AGCTTGATGGAAAACGGAAGGCTGCTGCTTGACACTGCTTCGTGGTTGTA
GGACTTCTAGCAGATAGGCTGTCGGATACGTCATGCAAAGGAGGTCAAGC
TTGATTACCAGAACAAGATCTCTGCAGAGCACCGACTGACGATCTGCTGG
GTTCTGGGGAGGAAGAATGGGCAATCTTCGTCGCACCGGTTTGGTGGTGC
TCCGACAAGAGATGGTCCTGCTACGCAGGCATTTGTCCCGAAAATTTCGT
TGGAGATACCTCACCCTAAGAAAGTGTCCAGTGTTTGGGTTGTTGTTATG
TACTCCGAGTATATATCTCCATCTTCTCTCTCCTTTTTCCGTCTACACCT
ACGTGGTCTTCCGTTCTCTTTTGAGAAAGATTAAGGTTTCCGTGATGGCA
AGGTGATGGCGATGAAAGTAGTCGAATCCGTAGAAAAATGAAGAAGAGCA
CAGGCAGACGTCATAGTCTACCCTTATGCGGAGAAACAGAAATCCAACAA
CAACAGCAGACGTACATGCATACGCCCACAAAACCAGGGACGACAAACAC
GCTAATTAACTGCTGTGTTTTTGTATGGTAGATACGATAAACTGCTGGTA
GCTCCCCCACAAATATACATGCGGGGGGGGTGTTTTTCGTGCAAAAACAT
GATGAAGGGAATAATGCACCTGGCCCCCAGTCGAGAACCTCGTATTTGGG
GCAACCCTATTACTGTAGCGCACCATCTGCTAGTGGAAGCCTTCGGGATA
GGGTTGAAGCCTTCTTCGTACATCATCTATCTCACTCACGGCAGTTTGAT
TATTGTTAAAGGTTGCCCGGCCGCACTCCTTCTACAAAAGCCCGTTTTGT
TTGTTTACGTGCGGTCTGGGACACGCGGTAGTTGAGACACACCTCTATTT
ACTAGTTCTACTTGCGAAGCAATGAAGGCCCACGAGACATGGAGCCGTAT
CCTTCCTACAGAGGGTTGAAGAGGGGGTCGGATACAGCAGGAGTTCGATA
TTGTTGTGGGCGTTTCTGGTTCTTCCCTGGTCGTTAATGAAATATCTAGG
CTATACCCGACCCGCACCCTTCCGGTTATCACGGCGAGGGTTTTACCGAT
CTGCGCTCAGAAAAACTCGTCTTTCCACTCTCTCGTTCGTCTTCCCGGTT
GTTCAGGCGGTTTTCGTGACGGGAATGGTCATGTTTCTCGTGTTCTACGG
GTACTACGAGGTGTGTGGGGCCTTCCTTGTGCCTGTCGATAGCGTGTCGA
GGGCACGTGAGAATTGCGTGGTGCACAAACCATTTTTTCAATATAGGCTA
TGGTTGTTGGTGGGAATGGAGAGGCCTACAAATACATTGCCTTGGCGCGT
GTCAGGAAGCCTGATCTCGTTCCACCCTTTCACTCAAGAATCGCTCACGG
CCTGCTACAACTCTGTGTACCGGCAACATCGATTCCTGAAACGTCCGCTG
GCCGGTGGTATACGTGCCAGCGACATTCGCACCCCGGTTCCCGCCTGCAA
GAGTGCGTATTTTTCTTCCCCCGGTCTTGTTCAGACCTTCTTGTGTACTC
CCCGAGGTCTCGGACCAGATCCGATGGTTGAACCACCGTTCTTGTTGTTT
CCTTCCAACCAACGTGTTTGCTCTGGTGCAAGCGTACTACCGGCACTTCG
ATGGATCGGGCCTGTGCCGACTGCTCCTTTTCCCCCGGCGTTCAGATTTC
TTATTGCAACTCCGCGTCACCTCTTCTCTTGCGACGTTGTGCTGTTCTTG
TCCTCAGCTGTGGGAGTTGTTCTTCCCAACCCTTGCATCCATGATGCTCC
AGATCTACCTGGCCGTCTTGAAGCTCCGCCTGGAACGTTGCCCCCGCCGA
CATACGGCGGCTACGCCCTCGACGGTTGCTAGCGAAACGCCCGGCGAAGG
CGCAACGCTTGACAACGGGTCAAGCGAGAGTAGCCCTCTGCTGAAGTCGG
CATAGTTGCGATGATCGACTTGGGGTTTTCTCGCGCCGCCAATATATAAC
CGAAACCGTTTGTTTTGACAAGCACGAGATAGTCCTTTCGCGGAGGGTGG
TTTCCTTGTCGGGTCGAGAGACTAGCTTTGCTGCCCATACCGATGATTTC
AGGCTTGTAAGAACCACCAGTCATGCTGGTCGATGCGAACTCGAGGGTCC
GGGTGTAAATAGTGCCAAGCTGGCTAAATCTCGCAGCTCACGAGACACGT
CGCAGCGACGAACAGCGGATGAGGAACCCAAACTCGCGCGTCCTTCAAAT
TGTCATGTATACTGTAAATCGTTGCCGGGGTGGGCTCTTTTTTAGGCGTG
TACGGGCAGCGGTACGCAATCGCCGTCGAAGTATAGCGGGTTTTGCGGCG
ATCGACGAGGCGGTGCTATTCCCCGTGAGAGGATGTTGATATGCCGCGAT
AGCTGTCGCGCCCAGAGTTGCATGCGACCGTCGAGTAGCACAGCCAAGTT
GTCTTCATTTGTTTTACCCACGTGCAGCGTGGACATCTGCCACGCGTGAC
ATTTTTTGTGTGGGTGCACGGTTGGTATTTTAGCGGTAGACATGGATTTG
GGTTTCGCGTTTCTTTTGGGCATCATGTCAAATCATGTTGACAATTTTCG
GTAAGACGCCAAATTCTGCGTGTGACCCCTAGGGCTCGTGACCGCTTTCC
TGCGTGTTGTATTTAGTTTTAGTGCATCATGATTATGCTGGACTTGAAAG
CAAACTGCCCAAC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:415574..419936+ >mRNA_E-siliculosus-1a_M_contig95.17510.1 ID=mRNA_E-siliculosus-1a_M_contig95.17510.1|Name=mRNA_E-siliculosus-1a_M_contig95.17510.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=762bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:415574..419936+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male) ATGACGTCCGATACAGTCTATGACGTGATGGGCTTTCTCGGAGGTGCGGT CATGGCCGCGGCGTTGGTGCCTCAAGTTTACCGCGTCACCGTGCGAAAGA AAGCCGCTGATATAAGCCACGTGTACCAGATGACGTCCGATACAGTCTAT GACGTGATGGGCTTTCTCGGAGGTGCGGTCATGGCCGCGGCGTTGGTGCC TCAAGTTTACCGCGTCACCGTGCGAAAGAAAGCCGCTGATATAAGCCACG TGTACCAGGCGGTTTTCGTGACGGGAATGGTCATGTTTCTCGTGTTCTAC GGGTACTACGAGGCGGTTTTCGTGACGGGAATGGTCATGTTTCTCGTGTT CTACGGGTACTACGAGCTGTGGGAGTTGTTCTTCCCAACCCTTGCATCCA TGATGCTCCAGATCTACCTGGCCGTCTTGAAGCTCCGCCTGGAACGTTGC CCCCGCCGACATACGGCGGCTACGCCCTCGACGGTTGCTAGCGAAACGCC CGGCGAAGGCGCAACGCTTGACAACGGGTCAAGCGAGAGTAGCCCTCTGC TGAAGTCGGCATAGCTGTGGGAGTTGTTCTTCCCAACCCTTGCATCCATG ATGCTCCAGATCTACCTGGCCGTCTTGAAGCTCCGCCTGGAACGTTGCCC CCGCCGACATACGGCGGCTACGCCCTCGACGGTTGCTAGCGAAACGCCCG GCGAAGGCGCAACGCTTGACAACGGGTCAAGCGAGAGTAGCCCTCTGCTG AAGTCGGCATAG back to top
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