mRNA_E-siliculosus-1a_M_contig95.17504.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig95.17504.1
Unique NamemRNA_E-siliculosus-1a_M_contig95.17504.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig95.17504.1 vs. uniprot
Match: D7G1U7_ECTSI (CUE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1U7_ECTSI)

HSP 1 Score: 486 bits (1252), Expect = 2.450e-162
Identity = 326/340 (95.88%), Postives = 328/340 (96.47%), Query Frame = 1 
Query:    1 MAEISTEDAVEQLHQMFGDYDKTALATVLEAHGGHVERTVEHLLSNPQAAXXXXXXXXXXXXXXXXXXXSGTDHDAALALQLSREWSDEPTNMPPPPVRPQGIPTPYGVGGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGDRRGRRVALPEQFLRTPGWTGGGAGEVSSDPQVAADAKLAMMLQNEAFQRELQSHPDLAYLGRGSRSGDSRGNAFGMGGEGPSIKEQMTSMGNDIRRKVDELAVRWKMKDPGRADQTTEYSSVPLMSSVDDDADDQAEVVHFSQNNATRRSSSGGSAAGVGVFRADSAGEEQLGE 1020
            MAEISTEDAVEQLHQMFGDYDKTALA VLEAHGGHVERTVEHLLSNPQAA  XXXXXXXXXXXXXXX   GTDHDAALALQLSREWSDEPTNMPPPPVRPQGIPTPYGVG     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGDRRGRRVALPEQFLRTPGWTGGGAGEVSSDPQVAADAKLAMMLQNEAFQRELQSHPDLAYLGRGSRSGDSRGNAFGMGG+GPSIKEQMTSMGNDIRRKVDELAVRWKMKDPGRADQTTEYSSVPLMSSVDDDADDQAEVVHFSQNNATRRSSSGGSAAGVGVFRADSAGEEQL +
Sbjct:    1 MAEISTEDAVEQLHQMFGDYDKTALANVLEAHGGHVERTVEHLLSNPQAASGXXXXXXXXXXXXXXXASRGTDHDAALALQLSREWSDEPTNMPPPPVRPQGIPTPYGVG-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGDRRGRRVALPEQFLRTPGWTGGGAGEVSSDPQVAADAKLAMMLQNEAFQRELQSHPDLAYLGRGSRSGDSRGNAFGMGGDGPSIKEQMTSMGNDIRRKVDELAVRWKMKDPGRADQTTEYSSVPLMSSVDDDADDQAEVVHFSQNNATRRSSSGGSAAGVGVFRADSAGEEQLAD 335
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig95.17504.1 vs. uniprot
Match: A0A836CN65_9STRA (CUE domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN65_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.100e-12
Identity = 62/155 (40.00%), Postives = 80/155 (51.61%), Query Frame = 1 
Query:  502 RGRRVALPEQFLRTPGWTGGGAGEVSSDPQVAADAKLAMMLQNEAFQRELQSHPDLA-YLGRGSRSGDSRGNAFGMGGEGPSIKEQMTSMGNDIRRKVDELAVRWKMKDPGRADQTTEYSSVPLMSSVDDDAD-DQAEVVHFSQNNATRRSSSGG 960
            RG  V LP+ FLR PG             QV AD +LA MLQN  F   L +HP+ A Y GR   +  S   A      GPS+ EQ+ +MG D++R +  LA +W +K        +  +SVPLM+     AD D+AEVV F Q + T R  SGG
Sbjct:   84 RGTPVNLPDNFLRVPG------SMTEESAQVQADERLAAMLQNADF---LAAHPEYASYGGRAPAARTSH--AQHAEDTGPSVTEQLQTMGADMKRNLLGLAAKWNLKPSTAPAADSGSASVPLMNRNSTAADEDEAEVVTFDQGDTTTRRGSGG 227
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig95.17504.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1U7_ECTSI2.450e-16295.88CUE domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A836CN65_9STRA1.100e-1240.00CUE domain-containing protein n=1 Tax=Tribonema mi... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig95contigE-siliculosus-1a_M_contig95:367900..377251 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1182
Model size2709
Exons8
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
EggNOG OGs2D10K@1,2SG93@2759
Seed eggNOG ortholog2880.D7G1U7
Seed ortholog evalue1.6e-136
Seed ortholog score492.7
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936517.3443072-CDS-E-siliculosus-1a_M_contig95:367899..3679891622936517.3443072-CDS-E-siliculosus-1a_M_contig95:367899..367989Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 367900..367989 +
1696251113.576747-CDS-E-siliculosus-1a_M_contig95:367899..3679891696251113.576747-CDS-E-siliculosus-1a_M_contig95:367899..367989Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 367900..367989 +
1622936517.3559673-CDS-E-siliculosus-1a_M_contig95:368913..3690381622936517.3559673-CDS-E-siliculosus-1a_M_contig95:368913..369038Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 368914..369038 +
1696251113.5900643-CDS-E-siliculosus-1a_M_contig95:368913..3690381696251113.5900643-CDS-E-siliculosus-1a_M_contig95:368913..369038Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 368914..369038 +
1622936517.3704028-CDS-E-siliculosus-1a_M_contig95:370160..3703841622936517.3704028-CDS-E-siliculosus-1a_M_contig95:370160..370384Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 370161..370384 +
1696251113.60887-CDS-E-siliculosus-1a_M_contig95:370160..3703841696251113.60887-CDS-E-siliculosus-1a_M_contig95:370160..370384Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 370161..370384 +
1622936517.596752-CDS-E-siliculosus-1a_M_contig95:372079..3722671622936517.596752-CDS-E-siliculosus-1a_M_contig95:372079..372267Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 372080..372267 +
1696251113.619497-CDS-E-siliculosus-1a_M_contig95:372079..3722671696251113.619497-CDS-E-siliculosus-1a_M_contig95:372079..372267Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 372080..372267 +
1622936517.6225758-CDS-E-siliculosus-1a_M_contig95:372873..3729551622936517.6225758-CDS-E-siliculosus-1a_M_contig95:372873..372955Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 372874..372955 +
1696251113.6327186-CDS-E-siliculosus-1a_M_contig95:372873..3729551696251113.6327186-CDS-E-siliculosus-1a_M_contig95:372873..372955Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 372874..372955 +
1622936517.6388366-CDS-E-siliculosus-1a_M_contig95:373307..3733731622936517.6388366-CDS-E-siliculosus-1a_M_contig95:373307..373373Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 373308..373373 +
1696251113.643755-CDS-E-siliculosus-1a_M_contig95:373307..3733731696251113.643755-CDS-E-siliculosus-1a_M_contig95:373307..373373Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 373308..373373 +
1622936517.654949-CDS-E-siliculosus-1a_M_contig95:374171..3742991622936517.654949-CDS-E-siliculosus-1a_M_contig95:374171..374299Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 374172..374299 +
1696251113.6532383-CDS-E-siliculosus-1a_M_contig95:374171..3742991696251113.6532383-CDS-E-siliculosus-1a_M_contig95:374171..374299Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 374172..374299 +
1622936517.6720939-CDS-E-siliculosus-1a_M_contig95:375445..3757241622936517.6720939-CDS-E-siliculosus-1a_M_contig95:375445..375724Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 375446..375724 +
1696251113.6626976-CDS-E-siliculosus-1a_M_contig95:375445..3757241696251113.6626976-CDS-E-siliculosus-1a_M_contig95:375445..375724Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 375446..375724 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936517.7193596-UTR-E-siliculosus-1a_M_contig95:375724..3772511622936517.7193596-UTR-E-siliculosus-1a_M_contig95:375724..377251Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 375725..377251 +
1696251113.6729062-UTR-E-siliculosus-1a_M_contig95:375724..3772511696251113.6729062-UTR-E-siliculosus-1a_M_contig95:375724..377251Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 375725..377251 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig95.17504.1prot_E-siliculosus-1a_M_contig95.17504.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig95 367900..375724 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig95.17504.1

>prot_E-siliculosus-1a_M_contig95.17504.1 ID=prot_E-siliculosus-1a_M_contig95.17504.1|Name=mRNA_E-siliculosus-1a_M_contig95.17504.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=394bp
MAEISTEDAVEQLHQMFGDYDKTALATVLEAHGGHVERTVEHLLSNPQAA
AGGGGGGGGGGGSGGGGASSGTDHDAALALQLSREWSDEPTNMPPPPVRP
QGIPTPYGVGGRGGGGGGGGGGGGGGGGGGGAGGVFAAERGSSMAQSAAA
AAASRGGGGGGGGSGDRRGRRVALPEQFLRTPGWTGGGAGEVSSDPQVAA
DAKLAMMLQNEAFQRELQSHPDLAYLGRGSRSGDSRGNAFGMGGEGPSIK
EQMTSMGNDIRRKVDELAVRWKMKDPGRADQTTEYSSVPLMSSVDDDADD
QAEVVHFSQNNATRRSSSGGSAAGVGVFRADSAGEEQLGESGQGDRHVLL
HVSAEVFAVEGACSLANTGVQDLPRAVLTERSMGLVIRWHVCR*
back to top

mRNA from alignment at E-siliculosus-1a_M_contig95:367900..377251+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig95.17504.1 ID=mRNA_E-siliculosus-1a_M_contig95.17504.1|Name=mRNA_E-siliculosus-1a_M_contig95.17504.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=9352bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:367900..377251+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGCCGAGATTTCTACCGAAGACGCCGTGGAGCAGCTGCACCAGATGTT
CGGCGACTACGACAAGACGGCCCTTGCTACTGTTCTCGAGGTACGCCTAC
GCACGTTGCCTGCACTTTTCTTTAGATACGGCCGGTGCCCGGTGAAGGAA
ATACTAGTACTTGGACACAGCAAATTTCGCATACCTCGCGAGCACTCATC
TAAAGAGCCTCCTTTACGGCCGCGTCCTTCAGATGAGATTACCTTTCGTG
TACGCGAATCTCTCCGCTTGTGCCTCCTCATCTTGGTGGTTCCGTGTGTT
CAATCCATCCAGCATCCAGTCAAGTCTTCAAATCCTTCGCACGCGTGCAG
GTTCCCCTGCCATCTCCCGGCGATTGGCGCTTCCATCGTGCGCTGCTGTT
GCCTATGGATCTTTTGGCGTTCTAACATCATGTTTCGCTGGTTGTGTCAT
TAGCAAGAGTGCGGGTGTGCCGGTACATACTCCAACTGCTTTGAATTCGT
GCTGCAATTACTCTCTGCATTCATGTCACCCCCAGCTCGCCATGTGCTGC
TCGTTTAAGCCATAGGAAAACGAAAGTGGGAGTGCAGAACTCCAGCACGA
AATCGTCGAAATGCCTGATTTTCCCGCAGAGAGTTCTGGCTGCGGCGGCC
AATCCGGCACTCGCAGACGTTCGCATACTGACGGCCTGGTATTCTAGCAC
GGAAACAGTGCTCAAAGTGTCAATTCAGTACAATAGCGGCGTGAAGCGAT
ACGAGGCCTCTTTCTTGACTTGAGGCACCTTTTCCGCCTGCCAAGTATTA
ATAAATTTGGTGTTGTAAAACCCAAGAACATGCACGACAACAGCATTGGT
CCGTGTGCGCTGCTCTGCAGCCCAGCAGATGATTTCTTGCATTCTCTCTC
CCCCCTCCTGCTCCGCTATCTACTATCTACCCGCCGAAGCTCATGGAACC
TCCTCACGCTACGTCTCACACCTTTCGTTTCTGTTTTTTCATGGCTGACC
CCTTCTTCTCACAGGCACACGGTGGGCACGTGGAGCGAACGGTGGAACAC
CTACTCAGCAACCCGCAAGCCGCTGCAGGAGGTGGAGGCGGCGGCGGCGG
CGGCGGCGGTAGTGGTGGTGGTGGGGCTTCCAGCGGCACGTAAGTGTGAA
GAGACGGTCTCTACGAGTTTCCGATGCCGCTGCGCTATGCCGACCACAGC
GAGGCGGTTGAAGCAGAGCTACACTACTCTTTGGAGGTTACGCCGAGTGT
TTTTGTGTTGTTTTGTTGGTTTTCTTTCAGCTGTGGGTTTACCCCGTTTT
CTTTCCTGCGCGCGCACGAAAAAGTACGCGGGAAGCGTGTTTACCCACGC
TTGTCGCGCCAAGCCAGACCTAAACCTATCGCCGCACAACGTACTATGCA
TACAAGTCATTTCATGGAGACACACACCACAGCTCCACGCATGCCCTCGC
CCGAACCTAGGAAGCCGCTGATGCAAAGGGCGGAGGGCAGTAAACGGGGT
GTTTCAAGCCAAGACACAGCAAGAAATTCGTTGCATGCATCTCCCTTCGA
CGCTCGTACACTCCCAAGATCCAGCAGTCATCGTGTCAGCAGACAGAAAA
AGTCAAACAAAATTGCAACACATGCATCCTTGCGTGGAAGAGTGAAGGTG
GATAGCCCTCCCGCGAGAACGTGTGTTCGTGTGTGGCTGTGTATGTGTGT
GTGTGTTTATTTTTAGCGTCGACCGCACCAACCGGCTGACTAATGAAAAG
ACGTCAGTCTCAGTGCGGTTGAAAACACAAAGCACTTCTAATGGGACCCC
GTGAGGGGGCGGCATGTGTGTGATGTGTGTGTGTGCGTGTGTTTGTGTGT
GTTTATTAGCATCGACCGCGCTAACCGGCTGACCAATGAAAAGACGTCAG
TCTTCGTGCGTGTGTGTTTACTTTTTTTTGCTGCGCTCGCGGAGACGACG
CCGCATTTTGACGTTTGCCCTGCGGCTGCCCCTCACCGGACATGACGACC
ACCACCATATCAAGGTTCAGAAGAGTCCATCCTACTTTTCGCCATACCCC
CTCACCCCTGCGTTACAACGCCCAGAAACGTCTATATTCGACTGCTTTTT
GCTGCCCTGTCACGGTGGCAAGTGTGGTGTCAATGCTAAAGCTCGCGTTT
TGCTTGACCCTTCGCGTGCCTGCCTTCCTTTCTTTCTTCCTTGCTCCTTC
TCACGGTCTCCTTGTGTGTTGTGTTGTACGCGGCGCTTCCAACTCGTCTT
GGTTGTACCAGCGACCACGACGCGGCGTTGGCGCTGCAGCTGTCTCGTGA
GTGGTCGGACGAGCCGACCAACATGCCCCCGCCACCGGTGAGGCCGCAAG
GGATACCGACGCCGTATGGCGTGGGCGGCCGGGGCGGCGGCGGCGGCGGC
GGCGGCGGCGGCGGCGGCGGCGGTGGCGGTGGCGGAGGAGCTGGGGGCGT
TTTCGCGGCCGAACGGGGCTCGAGCATGGCGCAATGTATGTTCGCTTTCG
TGGTGCAGTTTTTGGTCGATGCTAAAGGCGATGTCTTGTTTCGTGACTTG
ACCTGGCATCTTGGCTTGTCGTCTCAACTCGTCAAGAACTTAAAATGAGT
CCGTGAGTACTCTTCTGGATTGCCTCTGGAGTTTTATGTGATCTCTCTTG
TCGTGTGTGTGTGTATTGTATGTTTTTTAGTTCCCCAAAGGAGGTTTGAT
GCTGATCCGGACCCAAAAAATGCTAACGAGGATTGACGCCTTTGGTCACT
GCGGCAGGCATCGTCTTCCGTTCTCTTCATCTTTTAAAGCCATGCCATCT
ATTGCCCCACGGTCTGATCTGGCCGAAGAGAATCCGATCCGGGATAGGCC
GCTCAAAAGACTCTCGCGTGTATTCTTTCACCGTCGGGTCGGGCGTCGAG
TACATCACGTACGGCCCCCCTTCTTTCACAAACGCGGATTCTCGTGCTTC
CTTCCACAAGCGCGGCAAGTGCGCGGGTCCACGTTTGTGGAAGAGGGGCC
GTACGGGATGTACTCAACGCCCGACGCGATGGTGCAAGAACGAACGCAAG
CGTCTCTTGAGCGGTCTATCCCAGATCGAATTTATGTCAGAAATTTCGGT
AGGACGCCGAGTTTTCTGTGCGTGGTAAGGAGGTTAAGCCATGCCATCTA
TTGCCCCACGGTCTGACCTGGCCGGAGAGAATCCGATTCGGGATAGGCCG
CTCAAAGACGTTCATTCTTGCGCCGTCGCGTCGGGCGTCGAGTACATCCC
GTACGGCCCCCATTCCACAAACGCGGACCCTCGTGCTTCCTTCCACAAGC
GCGGCAAGTGCGCGGGTCCACGTTTGTGGAAGAGGGGCCGTACGGGATGT
ACTCGACGCCCGACGCAATGGTGCAAGAACGAACGCAAGAGTATTTTGAG
TGGCGTACGTATCCCAGATCGGAATTTCTGCGGGAAGCCTTATGTAGGGT
CCGCGTTTGTGGAAGGGGGACTGTAAGGGATTGTGTACTCGACGCCCGAC
GCAACGGTGAAAGAGCTTCCCGCAGGTGACACAAGGTTGTACACCCGTTG
GACCGATATCTAAACCTCGATTGCTCGACGTGTTAGGAGTTGTAGTGCCA
ATGATGGTATGATGGTGGGGTTGGTACCTCTTCATCGAGAGGACCCCAAA
AACATGTCGTTTGATTGTGGCACCCATCGTGCTTTATAGATTGGATACAG
GGGGTGTGATATATCATGTCACCTACGGAATACTAGCTGTACAGCAGCAG
CAACAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCTCCTTCCCTG
ACCCCCTGCCTTGTCACGAGCCGTGTGGACAGCTACCGTTGCACGTGAGA
GTGGTCGCGGCTTCGTGGCTGCACTGCCAATGCCTGGGTCGGTTGTCGTC
TGTGAGCGCTCGTATGTCTGTCGCGGGATCGATAGTACAGGCAGCACCTG
CATTATGACGAAACCGCGAAGTGGCATGACAACGGCGACAGCGATGGTAG
TGGTGGCGTGCGCACCCCCACGCAGCCACCTTTTGACCGTACGCGTTTGG
CATCGCCAAGAGCGAAAGAACAAAAAAAAGGCGATGCGCATCAGCAGACG
GTGCTCATCCGACGATGCCCACCCGACATTTCTCGCGCTTGACCGATCGC
AAACCCCGACTCCCTTGGTCGCAACGGCAGCCGCAGCAGCGGCGGCCGCA
TCACGAGGCGGCGGCGGAGGCGGTGGGGGTAGCGGCGATCGAAGAGGCCG
ACGTGTCGCGCTGCCAGAGCAGTTTCTGCGGACGCCCGGCTGGACGGGCG
GGGGCGCGGGCGAGGTGTCGAGCGATCCGCAGGTGGCGGCGGACGCTAAG
CTTGCCATGATGCTGCAGGTGGGTTGATGGTACTGCAGTGGTGTTCGGGG
TGTGTCTGCTGTTTGTGCACCGGGCGTCGCGCTGTTTTCGTTTTTTTGTT
GGTTCGCGCGTTTCTTGTCCCTTGTTTGTCTGGTGCTTGCTCGCGAACAA
GCGCGTGCTACCGACCACCGATGCCCTCCGCTACGTTTGTTGTTGTTGTT
GTTGTTGCTGTTGCTGATATTGATATTGCGTTGCTCTTGCTTGTATTTTC
TAGGCGCTTATTATCCTCTCTTCGATTTCCCTCGAGACAACATCCGAATC
AGAGTTGCTGTTGCATGGGTTTATTCTTTTGCGTGCTTTCGTTCGGCTTG
TTCACCGCACCTCCCGTCTATTTTCGGCTGAAGATTCGCCTCAAACATAC
ACCCGTTGCGATTGGTACGACTTAAAACCCAATTACGTTCCCTATTGAAC
CTGCGAAACACCATAAATCATTTTCGTTCTTTTTCTCTCTCGCTTGCCTC
CGATCGCAGCGCAAGTTGTCCCGGGAAAACTCTCGAGTCGTTTTTTCGCC
ATCCGTGCGCTTGCGCTTTTTTACGTAACATGACCCCCCAACCCCACACG
TGCTTGTGTTCGCGTCTCTGGCAGAATGAAGCATTTCAGCGCGAGCTCCA
ATCGCACCCGGACTTGGCCTACCTGGGGAGGGGTTCACGGAGTGGCGACA
GCCGAGGTAAGCAGATAGGCGAGCGTGGGTGTCGCAGAAATATGGTGTAC
GAGTAGGTGAACGCGCTACGGCGGAGCCTCGCATCATGAGGGGATACATG
GCGTTGTGGCGGCACCCATAGTCAAGCAAATAGGCAAGGATGGGGTGCCG
CAGAATGGCGGTGTAGTGGAAAGCATAGGTGAACGAAATACGACGGAACC
AACCCCGCACCTTGACGGGTTTTTTTTTGCGTTTGTGTCGCTTGGTCGCC
AACTCTGCACCAGGACGTTTTGACCGCGCGGCATCTGAACACGGGCACAA
GGCAGTCGGTCAGTTTGCTCATCTCTCTCTTCCCTTTGTCTCACTCTTTT
GCTTGAAGGGAACGCGTTCGGCATGGGAGGGGAAGGTCCGAGCATTAAGG
AGCAGATGACCTCCATGGGAAACGGTGAGAAAGCCTTACCTGTGCATGCG
AGAGTCGTCGGGTAGCTGGCCGTGTGACGTTTGGACTTTTTATTTGGTAC
AGGACGATGACACAAGCCTGCGTGGGTACCGTACACGACACCTGGACCGA
TTGTCAAAGCTCGATTTCTCGACAACGAAGAGGATTCATAAACGAAACGC
TACCTTTTCGGAGAGCCTCTCGACCAGACGGCTTCAACGCCGCCATTTTC
GGCGCAGTGACTCTTTCTGCCGTTGAGAAAATCGATCTTTGAAAATCGGT
CGAGCAGGGGGTGGTGTTTTGTCTTGTGTCGTAGGCTTGTTGGGATGGTG
CACGCGAGGCCGGCAGCAGACCGGTAAGAAGGGAGAGAACTGGAAAGGGG
AGCTCGTCGCTCGCATGAATCTGATCCGTTATTTTGCCGAAAGCGCTCTT
CTGAGTAACGCTTTTCGCTTGGGGCAGGCATCATCCTACGAGTGGAAAGC
TTGTACTTCTTGATTTCACCGGAGGTAACGATGAGGGGAGACACCCGCTT
TCGCGGATTCGTTCAGTTGTTGGACGGGGAACGCCGGCCGATACGTGGAG
ATGATGATGGGTGTGTACCGAAGACGCGCTCACATGAAGAGCAGCGAACA
CGGGGGAAGTGCTACTTTGTTCTTTTTCACGGGAGACTTGATTGGTTTTT
TGACAGCGGTCGGGTAGAAGGGGTCGAGATCGTGGTCAGGTTTGATGGTT
CTGGACGCCGCTCGCTGCTTGAGCCGCCACCGACGACACAAATGTTTGGG
GTGAAAATGATTCCGTACACAGACATTCGTCGCAAGGTGGACGAGTTGGC
CGTGCGGTGGAAGATGAAGGACCCTGGGCGGGCGGACCAGACTACGGAGT
ACAGCTCGGTGCCGCTGATGAGCTCGGTCGATGACGATGCAGATGACCAG
GTGCGGTGTGACTCATTTCGTTTCGTGAACTTTGGGTTTCAACGTCTACG
TGGGTCAAATCGCCCGCCTGGTCGGTGCAAGCTCTACTTTGCGTGCCCGG
ACTGCTGTGTGTTTGTGTGTGCGCGTTCTTGTCTTGTTTGGTTTTGATTT
TGTTCCTATATACGGAAAATCTCTGAACTGTGATATCAGCTGATCCATGG
GTCTGAGTAGAGATGACGGCCGTGCCTGATTCTGAACACGCACATGCTTG
AGCCAGTGCCGCACTCCAGGGGATCCCCCTGGACCGGTTTTGTGGTTGCA
AGTTAGGAGGGGGGGAAAGTGTGGTATTTGCAGCTCAGAACCGCTTTCGG
ATCGGCGTCAAGACGATGCGGTGTAATCTATGGAGCAGCCGAAGTTGTAC
GCTTTCTGACGCCATGCTGAAGCAAGTTTGCCCAACCTTCAACCCCTTTG
AGAGGCCCAGAAATTCAGTGTTGTTGCGAAGTTTCTGAGAAGTACGAAAA
CGAGAGAACGACGCCTGCTGTATGGATGACGCGGGCAGTTCCATTCCTGG
GTGCTATTGCAAAGCGAACTTGCCCATCCAAGCCGCTTCTTGTCTAAAAG
CCCCTCTCAAGTGTCCCCTCGAAATTGAGGGGACATTTGGTAGGGGTTGT
AGACGACAACCGGAGGGAGCGTGGTAAAACGGGGCACGAAAAGGAGGCTT
TCAAGATGTTCCTCTTGAGGAAAGAGAGAACTTCTAACCCAAGCCCTAGG
TTGCCCGGTGCCTCCCCTCATCGGTGGGCTATTATAGTTACTTCTTCCAC
GCTTGCCCCTTGTTCGCGCTTTCCACCCAAGGGTAGACAGACGCGGTGCG
ACTTCGCTGTTGAACCCGCGGTATTGTCCCACCCTTCGGCCTGTCATTTA
CCCTCTTACTCCTCCACGCTCCAAAGCATCCACACTAGACTATAGTTGTC
CAACGTACCCGGCACCCCCCCGTTGTCGAGTAGTGCAAACGAGGAGACGA
CCGTGGCATTCTTGGCGAGGTAACGCAGGCGAAGAAGGTGGAGACAAAAA
GTGTTCCCGGGAGCCGATCTAGCTCTACAACGGTTATGCTCGTTGCCATG
GCATTCTCGTCGCGGCGTCTTTCTTTTTTTCTCTCTTGTTTTCTAGGCTG
AAGTCGTCCACTTCTCCCAGAACAACGCCACCCGCCGCAGCTCCTCGGGC
GGCAGCGCCGCAGGCGTGGGGGTGTTTCGCGCCGATTCCGCGGGGGAGGA
GCAGCTAGGTGAGAGTGGACAGGGAGACAGGCACGTGCTTCTACATGTAT
CAGCAGAAGTTTTTGCGGTTGAGGGGGCGTGCTCTTTGGCGAACACTGGG
GTTCAGGACTTGCCGCGCGCAGTATTGACAGAACGAAGTATGGGGTTGGT
TATCAGGTGGCATGTCTGCAGGTAATGTATGGGTAGGGGCCCTACAGGGC
AGTGCAGAGGAGATGCATCTGCTGCTGGGCGAAGGCCGGCAGGCGGTGTC
CAGGTGAGCGCGACCGGGTTGGTGGCGGAGGAGAGGGGAGACCGCGTCCT
TGGTGTACCCTTTTTTCTTACCGCGGTTTGTATGCATACCAAGACGTTTT
TCTCACCAATATGAGCACCCTCACTATGTAGCGCCCTGCGTGCTTGCAAC
GATTGGGCCGCGCCTCCCTCGTCGCCAGTGTACGCGTTTTTCCCTTTACC
TTTTACTCTCACGAGTCTGCCTCCCCCGATGCCCCGCCCCCGGCTCTATC
GTTCGCGCTGCATACTTCTTGGTTGCCTTTTTGGTACACCTTCCGCAGCC
GACCCCCGGCGTGCCAACAAGAAGGACCGGTAACGGCTCGGGGGGCAAGC
TTGTTCTTCTTTTTCGGCCCCGCTGCCTCGACTCGGCGCGTGCCTCTAAC
GCGGCGTGGCCGATGGTCCCAAGCCCTTCCCTGGAACAGGCGGACCGGTA
GAGGCAGAGCGTTCTTTGTTGGGCCTCCCTTCGTTCGGTGCGTTCTTGAA
ATGTTTTTGGGGGAGGGCAGAAGACTATCGGTGCTGGTTAACTCATCATC
GTGTGTTGAATTTTTGTTGCCGTGGGGTTGGTCGGAACTGCGGCTCCCGC
GTTTTTGCGTTCGGGGTGGTGTAAGGAATGGTGATACATGCACCCCCGTA
AGGAGTGCGAGGCAGTCCTGTACCCCCCCTCCCCCCCCCCTCCCCCCCCG
CAACGAGGGGCTACCTCGCGACCCTGCCGCTGCGCTTGTTTGTGGCGTAT
AAGAGGCGCTTGATTTTGAACCAACATCGGGGGATGCGTACCACTGCAGC
TCTGTTCTGAAGAAGTTGGTTCGATTTTCTTTCTATTCTCGTTGAGGTCT
CTGCTAGGGACGGGAAGGGGTACTCGACTGCAATGATTTGGATGGATCCT
CTGCACGGTGTCGGCTGACGGGTTGCATCGGCGGCACTTCACCTTGCTCA
TGGTGTTGTTTCTTGGGCGTGGTGCTGTGTAAGCGTATCCTGCCTATTCG
CAAAAAAGGGTGTATGTAGCACGACAGCACGGGATTTTGTACGCTATGGT
TGTAGCTGTTTTCCCCCACCAGTCGTTTTGGCGGTGGCTGATTGTGTTGC
TGTATCGTTTGACAGGGCTACTGTGTTTTTATGAAGGGCCCGTGTGTGAG
AGGGATATGCACGGTGAAGTAGAGTAAAGTTCTGAAGTCTCACAGAATTG
AGAAAATACGTCGTAATCGCGTTAGTCATCGGCCCGATTTATCTCGAAAT
AAGAGGCTTTGATGTTCATATCCCACCCTTCACGAGCACCTCGCTGTAGG
CGTTGCGCCCAATTAAAGATCCCCCAGACGCTGCCGTCTTCCACCTGTGT
GTCCGCGTTGCGAGTGTGTGTGTCCTGTTCACCCATGTTTTCCCGGCGGC
AAACCAAACCATGACATGCAAACATGAATGCACGGGCGAGGGCCGCACGA
GG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:367900..377251+

>mRNA_E-siliculosus-1a_M_contig95.17504.1 ID=mRNA_E-siliculosus-1a_M_contig95.17504.1|Name=mRNA_E-siliculosus-1a_M_contig95.17504.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2364bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:367900..377251+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGCCGAGATTTCTACCGAAGACGCCGTGGAGCAGCTGCACCAGATGTT
CGGCGACTACGACAAGACGGCCCTTGCTACTGTTCTCGAGATGGCCGAGA
TTTCTACCGAAGACGCCGTGGAGCAGCTGCACCAGATGTTCGGCGACTAC
GACAAGACGGCCCTTGCTACTGTTCTCGAGGCACACGGTGGGCACGTGGA
GCGAACGGTGGAACACCTACTCAGCAACCCGCAAGCCGCTGCAGGAGGTG
GAGGCGGCGGCGGCGGCGGCGGCGGTAGTGGTGGTGGTGGGGCTTCCAGC
GGCACGCACACGGTGGGCACGTGGAGCGAACGGTGGAACACCTACTCAGC
AACCCGCAAGCCGCTGCAGGAGGTGGAGGCGGCGGCGGCGGCGGCGGCGG
TAGTGGTGGTGGTGGGGCTTCCAGCGGCACCGACCACGACGCGGCGTTGG
CGCTGCAGCTGTCTCGTGAGTGGTCGGACGAGCCGACCAACATGCCCCCG
CCACCGGTGAGGCCGCAAGGGATACCGACGCCGTATGGCGTGGGCGGCCG
GGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGTGGCGGTG
GCGGAGGAGCTGGGGGCGTTTTCGCGGCCGAACGGGGCTCGAGCATGGCG
CAATCGACCACGACGCGGCGTTGGCGCTGCAGCTGTCTCGTGAGTGGTCG
GACGAGCCGACCAACATGCCCCCGCCACCGGTGAGGCCGCAAGGGATACC
GACGCCGTATGGCGTGGGCGGCCGGGGCGGCGGCGGCGGCGGCGGCGGCG
GCGGCGGCGGCGGCGGTGGCGGTGGCGGAGGAGCTGGGGGCGTTTTCGCG
GCCGAACGGGGCTCGAGCATGGCGCAATCCGCAGCAGCGGCGGCCGCATC
ACGAGGCGGCGGCGGAGGCGGTGGGGGTAGCGGCGATCGAAGAGGCCGAC
GTGTCGCGCTGCCAGAGCAGTTTCTGCGGACGCCCGGCTGGACGGGCGGG
GGCGCGGGCGAGGTGTCGAGCGATCCGCAGGTGGCGGCGGACGCTAAGCT
TGCCATGATGCTGCAGCCGCAGCAGCGGCGGCCGCATCACGAGGCGGCGG
CGGAGGCGGTGGGGGTAGCGGCGATCGAAGAGGCCGACGTGTCGCGCTGC
CAGAGCAGTTTCTGCGGACGCCCGGCTGGACGGGCGGGGGCGCGGGCGAG
GTGTCGAGCGATCCGCAGGTGGCGGCGGACGCTAAGCTTGCCATGATGCT
GCAGAATGAAGCATTTCAGCGCGAGCTCCAATCGCACCCGGACTTGGCCT
ACCTGGGGAGGGGTTCACGGAGTGGCGACAGCCGAGAATGAAGCATTTCA
GCGCGAGCTCCAATCGCACCCGGACTTGGCCTACCTGGGGAGGGGTTCAC
GGAGTGGCGACAGCCGAGGGAACGCGTTCGGCATGGGAGGGGAAGGTCCG
AGCATTAAGGAGCAGATGACCTCCATGGGAAACGGGAACGCGTTCGGCAT
GGGAGGGGAAGGTCCGAGCATTAAGGAGCAGATGACCTCCATGGGAAACG
ACATTCGTCGCAAGGTGGACGAGTTGGCCGTGCGGTGGAAGATGAAGGAC
CCTGGGCGGGCGGACCAGACTACGGAGTACAGCTCGGTGCCGCTGATGAG
CTCGGTCGATGACGATGCAGATGACCAGACATTCGTCGCAAGGTGGACGA
GTTGGCCGTGCGGTGGAAGATGAAGGACCCTGGGCGGGCGGACCAGACTA
CGGAGTACAGCTCGGTGCCGCTGATGAGCTCGGTCGATGACGATGCAGAT
GACCAGGCTGAAGTCGTCCACTTCTCCCAGAACAACGCCACCCGCCGCAG
CTCCTCGGGCGGCAGCGCCGCAGGCGTGGGGGTGTTTCGCGCCGATTCCG
CGGGGGAGGAGCAGCTAGGTGAGAGTGGACAGGGAGACAGGCACGTGCTT
CTACATGTATCAGCAGAAGTTTTTGCGGTTGAGGGGGCGTGCTCTTTGGC
GAACACTGGGGTTCAGGACTTGCCGCGCGCAGTATTGACAGAACGAAGTA
TGGGGTTGGTTATCAGGTGGCATGTCTGCAGGTAAGCTGAAGTCGTCCAC
TTCTCCCAGAACAACGCCACCCGCCGCAGCTCCTCGGGCGGCAGCGCCGC
AGGCGTGGGGGTGTTTCGCGCCGATTCCGCGGGGGAGGAGCAGCTAGGTG
AGAGTGGACAGGGAGACAGGCACGTGCTTCTACATGTATCAGCAGAAGTT
TTTGCGGTTGAGGGGGCGTGCTCTTTGGCGAACACTGGGGTTCAGGACTT
GCCGCGCGCAGTATTGACAGAACGAAGTATGGGGTTGGTTATCAGGTGGC
ATGTCTGCAGGTAA
back to top