mRNA_E-siliculosus-1a_M_contig95.17498.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig95.17498.1
Unique NamemRNA_E-siliculosus-1a_M_contig95.17498.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig95.17498.1 vs. uniprot
Match: D7G1U0_ECTSI (Altered inheritance of mitochondria protein 24, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1U0_ECTSI)

HSP 1 Score: 438 bits (1127), Expect = 1.790e-149
Identity = 225/227 (99.12%), Postives = 225/227 (99.12%), Query Frame = 2 
Query:  557 MASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSMFRRVITGQNMFVTDYVNRGDASGKVGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTKMMAGFFGGEGFVLQRLTGKGDAFVKASGPLIQRELREGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGGR 1237
            MASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSMFRRVITGQNMFVTDYVNRGDASGKVGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTKMMAGFFGGEGFVLQRLTGKGDAFVKASGPLIQREL EGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKL GPGTVFLQGLPFDRMVDQIARRIPGGR
Sbjct:    1 MASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSMFRRVITGQNMFVTDYVNRGDASGKVGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTKMMAGFFGGEGFVLQRLTGKGDAFVKASGPLIQRELSEGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKLAGPGTVFLQGLPFDRMVDQIARRIPGGR 227
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BLAST of mRNA_E-siliculosus-1a_M_contig95.17498.1 vs. uniprot
Match: A0A7S2WLF3_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WLF3_9STRA)

HSP 1 Score: 301 bits (771), Expect = 6.350e-97
Identity = 141/231 (61.04%), Postives = 189/231 (81.82%), Query Frame = 2 
Query:  545 LDFDMASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSMFRRVITGQNMFVTDYVNRGDASGKVGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTKMMA-GFFGGEGFVLQRLTGKGDAFVKASGPLIQRELREGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGG 1234
            +DF+ AS++EG +SQ+VT  LEPGQV+RAE+G +++M DG+EM+T+TGGG  + F+R +TGQN+F++DY  +GD  G V LGTD PSKI+RL L  + G+++CQ+GA L  SHT+DI+TEFTK  + GFFGGEGFVLQ L G+GD FVKA G +I++EL  GE LR+SSGS+VAFS +V+YD+Q +PGFKNV+FGGEGLF+T LTGPGT++LQG+P  RM+ +IARR+P G
Sbjct:   49 IDFNTASRIEGSDSQIVTVRLEPGQVLRAESGGMMYMTDGVEMNTSTGGGVGAGFKRFLTGQNVFISDYTYKGDRFGIVALGTDFPSKIMRLSLPEWDGKIVCQKGALLCASHTVDIETEFTKKFSTGFFGGEGFVLQALLGEGDVFVKAGGSIIKKELNPGEQLRISSGSLVAFSQTVEYDIQMMPGFKNVLFGGEGLFVTTLTGPGTIWLQGMPPQRMISEIARRVPSG 279
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BLAST of mRNA_E-siliculosus-1a_M_contig95.17498.1 vs. uniprot
Match: A0A4D9D418_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D418_9STRA)

HSP 1 Score: 301 bits (772), Expect = 3.310e-96
Identity = 149/242 (61.57%), Postives = 195/242 (80.58%), Query Frame = 2 
Query:  518 QDHLALAKPLDFDMASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSMFRRVITGQNMFVTDYVNRGD--ASGKVGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTKMM-AGFFGGEGFVLQRLTGKGDAFVKASGPLIQRELREGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGG 1234
            +D  ALAKP+DFD+AS+VEG E+Q+V  +LEPGQV+RAE G+L++M DG+E++T+ GGG S+  +R +TG+NMF++D+   G   +SG V LGT+ PSKI+R+ LA YGG +ICQ+GAFL G+H   ++ EFT+   +GFFGGEGFVLQRLTG GDAF+KA G LI+REL EGETLRV+SGS+V F+ SVQYDV+ + G KNV+FGGEGLF+T LTGPG+VFLQ +PFDR+V  IA R+P G
Sbjct:   17 EDQTALAKPIDFDVASRVEGAETQIVVVDLEPGQVLRAETGSLLYMTDGVELETSLGGGLSAGLKRYMTGENMFISDFKYHGPEGSSGTVALGTEFPSKIIRVTLADYGGSLICQKGAFLCGTHLTGMEMEFTRSFKSGFFGGEGFVLQRLTGGGDAFIKAGGALIRRELSEGETLRVTSGSLVGFAPSVQYDVEMLKGVKNVMFGGEGLFVTTLTGPGSVFLQSMPFDRVVASIASRVPRG 258
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BLAST of mRNA_E-siliculosus-1a_M_contig95.17498.1 vs. uniprot
Match: W7T4F9_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T4F9_9STRA)

HSP 1 Score: 301 bits (770), Expect = 1.280e-95
Identity = 149/242 (61.57%), Postives = 193/242 (79.75%), Query Frame = 2 
Query:  518 QDHLALAKPLDFDMASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSMFRRVITGQNMFVTDYVNRGD--ASGKVGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTKMM-AGFFGGEGFVLQRLTGKGDAFVKASGPLIQRELREGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGG 1234
            +D  ALAKP+DFD+AS+VEG E+Q+V  +LEPGQV+RAE G+L++M DG+E++T+ GGG S+  +R +TG+NMF++D+   G   +SG V LGT+ PSKI+R+ LA YGG +ICQ+GAFL G+H   ++ EFT+    GFFGGEGFVLQRLTG GDAF+KA G LI+REL EGETLRV+SGS+V F+ SVQYDV+ + G KNV+FGGEGLF+T LTGPG VFLQ +PFDR+V  IA R+P G
Sbjct:   74 EDQTALAKPIDFDVASRVEGAETQIVVVDLEPGQVLRAETGSLLYMTDGVELETSLGGGLSAGLKRYMTGENMFISDFKYHGPEGSSGTVALGTEFPSKIIRVTLADYGGSLICQKGAFLCGTHLTGMEMEFTRSFKGGFFGGEGFVLQRLTGGGDAFIKAGGALIRRELSEGETLRVTSGSLVGFAPSVQYDVEMLKGVKNVMFGGEGLFVTTLTGPGAVFLQSMPFDRVVASIASRVPRG 315
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BLAST of mRNA_E-siliculosus-1a_M_contig95.17498.1 vs. uniprot
Match: A0A1Z5KFL0_FISSO (Altered inheritance of mitochondria protein 24, mitochondrial n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KFL0_FISSO)

HSP 1 Score: 296 bits (757), Expect = 6.750e-95
Identity = 145/251 (57.77%), Postives = 192/251 (76.49%), Query Frame = 2 
Query:  485 TGVSDAPAATEQDHLALAKPLDFDMASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSMFRRVITGQNMFVTDYVNRGDASGKVGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTKMM-AGFFGGEGFVLQRLTGKGDAFVKASGPLIQRELREGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGG 1234
            T  S  P  T  D + + +P+DFD+A+K+EG ESQ+VT EL P QV+RAE+G ++++ +G+EM+T TGGG S+ FRR++TGQN F++DY   G+  G+V LGTD PSKI+RL +  YGG+++CQ+GA L  SHTID+Q EFTK   +GFFGGEGF+LQ LTG+GD F+KA G LI+R+LR GE LR+SSG +VAF++ + YDVQ + GF NV  GGEGLFIT L GPGTV+LQG P  RM+ +IARR+P G
Sbjct:   29 TFASQTPTLTSVDGV-VGEPIDFDLAAKIEGNESQIVTIELRPNQVLRAESGAMMYLTEGVEMNTTTGGGLSAGFRRMMTGQNFFISDYTYTGNTVGRVALGTDFPSKILRLNVPEYGGKLVCQKGALLCASHTIDVQMEFTKSFTSGFFGGEGFILQALTGEGDVFLKAGGTLIRRDLRAGEELRISSGCLVAFTSQIDYDVQMVKGFANVFAGGEGLFITTLKGPGTVWLQGQPPQRMISEIARRVPAG 278
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BLAST of mRNA_E-siliculosus-1a_M_contig95.17498.1 vs. uniprot
Match: A0A7S4QQY9_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QQY9_9STRA)

HSP 1 Score: 297 bits (760), Expect = 1.500e-94
Identity = 147/244 (60.25%), Postives = 189/244 (77.46%), Query Frame = 2 
Query:  512 TEQDHLALAKPLDFDMASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSMFRRVITGQNMFVTDYVNRGDAS--GKVGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTKMM-AGFFGGEGFVLQRLTGKGDAFVKASGPLIQRELREGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGG 1234
            T  D +    P++FD+ASK+EG+ESQ+VT  +EPGQV+RAE+G L++M DGIEM+T +GGG S+ F+R++TGQN+F++DY   G++   G V LGTD PSKI+RL    YGG+++CQ+GA L  SHTIDI+ EF K   AGFFGGEGFVLQ LTG GD FVKA G +I++EL  GE LR+SSG +V FS  V +DVQ +PGFKNV+FGGEGLF+T LTGPGTV+LQG P  RM+ +IARR+P G
Sbjct:   95 TSSDGVVATHPINFDIASKIEGKESQIVTVAIEPGQVLRAESGALMYMTDGIEMNTTSGGGMSAGFKRLLTGQNVFISDYTYTGESGTRGLVALGTDFPSKIIRLNPNQYGGKIVCQKGALLCASHTIDIEMEFAKKFTAGFFGGEGFVLQALTGDGDVFVKAGGTMIRKELEAGEQLRISSGCLVCFSQGVDFDVQMMPGFKNVLFGGEGLFVTTLTGPGTVWLQGQPPQRMISEIARRVPSG 338
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BLAST of mRNA_E-siliculosus-1a_M_contig95.17498.1 vs. uniprot
Match: A0A7S0C9P2_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial n=6 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C9P2_9STRA)

HSP 1 Score: 293 bits (751), Expect = 4.910e-94
Identity = 147/246 (59.76%), Postives = 191/246 (77.64%), Query Frame = 2 
Query:  506 AATEQDHLALAKPLDFDMASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSMFRRVITGQNMFVTDYVNRGD--ASGKVGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTKMM-AGFFGGEGFVLQRLTGKGDAFVKASGPLIQRELREGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGG 1234
            AAT  D + +  P+DFD++SK+EG ESQ+VT ELEP QV+RAE+G +++M +G+ M+T TGGG S+ F+R++TGQN F++DY   G+    G V LGTD PSKI+RL +  YGG+++CQ+GA L  SHTI+I+ EF K M AGFFGGEGFVLQ LTG GD FVKA G LI+R+L +GE LR+SSG +V FS  V+YD+Q +PG KNV+FGGEGLF+T LTGPGTV+LQG P  RM+ +IA R+PGG
Sbjct:   25 AATSADGV-VGLPIDFDVSSKIEGNESQIVTIELEPNQVLRAESGAMMYMTEGVTMETTTGGGMSAGFKRMMTGQNAFISDYRYDGEPGTKGLVALGTDFPSKIIRLDVKDYGGKIVCQKGALLCASHTINIEMEFAKKMTAGFFGGEGFVLQSLTGDGDVFVKAGGTLIRRDLGDGEILRISSGCLVGFSNGVEYDIQMMPGIKNVMFGGEGLFVTTLTGPGTVWLQGQPPSRMISEIASRVPGG 269
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BLAST of mRNA_E-siliculosus-1a_M_contig95.17498.1 vs. uniprot
Match: A0A7S2GIV3_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GIV3_9STRA)

HSP 1 Score: 293 bits (750), Expect = 9.030e-94
Identity = 150/248 (60.48%), Postives = 192/248 (77.42%), Query Frame = 2 
Query:  497 DAPAATEQDHL-ALAKPLDFDMASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSMFRRVITGQNMFVTDYVNRGDASGKVGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTKMMA-GFFGGEGFVLQRLTGKGDAFVKASGPLIQRELREGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGG 1234
            D   AT   H   + KP++FD A +VEG ++Q+V  EL PGQ +RAE+GNL++M +G+EM+T   GG SS F R+++G  MF++++   G  SG V LGTDVPSKI+R+ L  YGGE+ICQ+GAFLAGS  I+I+  FTK    GFFGGEGFVLQ+L+G+GDA+VKA+G L+ ++L EGETLRV++GS+VAF  S+ YDVQ + G KNVVFGGEGLFIT LTGPGTV+LQG+ FDRMVDQIARRIP G
Sbjct:   50 DKKVATTSPHADVVRKPINFDAAGRVEGGDAQIVHVELLPGQTLRAESGNLIYMTEGVEMETVALGGVSSGFARLLSGGTMFLSNFEYTGSGSGTVALGTDVPSKILRMHLPNYGGEIICQKGAFLAGSDDINIEMAFTKSFTTGFFGGEGFVLQKLSGEGDAYVKATGALVTKQLEEGETLRVTAGSLVAFEASIDYDVQMMKGMKNVVFGGEGLFITTLTGPGTVYLQGMQFDRMVDQIARRIPRG 297
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BLAST of mRNA_E-siliculosus-1a_M_contig95.17498.1 vs. uniprot
Match: A0A7S1VUA2_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VUA2_9STRA)

HSP 1 Score: 294 bits (752), Expect = 3.610e-93
Identity = 149/248 (60.08%), Postives = 192/248 (77.42%), Query Frame = 2 
Query:  497 DAPAATEQDHLALAKPLDFDMASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSMFRRVITGQNMFVTDYV-NRGDASGKVGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTK-MMAGFFGGEGFVLQRLTGKGDAFVKASGPLIQRELREGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGG 1234
            DA A T  D ++  +P++FD+A+K+EG ESQ+VT  LEP QV+RAE+G ++FM DG+EM+T TGGG S+ F+R++TGQN F++DYV NR    G+V LGTD PSKIVRL +A YGG++ CQ+GA L  SHTIDI+  FTK   AGFFG EGFVLQ L+G+GD FVKA G LI+++L EGE LR+S GS+VAFS  V +DVQ + G KN +FGGEGLF+T LTGPGTV++QG P  RM+ +IARR+P G
Sbjct:  105 DAGALTSSDGVS-GRPINFDVAAKIEGNESQIVTVTLEPNQVLRAESGAMMFMTDGVEMNTTTGGGLSTGFQRMLTGQNFFISDYVYNRPTGKGQVALGTDFPSKIVRLNVAEYGGKITCQKGALLCASHTIDIEMAFTKNFSAGFFGSEGFVLQALSGQGDVFVKAGGTLIRKDLEEGEDLRISGGSLVAFSNGVDFDVQMMKGVKNTLFGGEGLFVTTLTGPGTVWIQGQPPQRMIGEIARRVPSG 351
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig95.17498.1 vs. uniprot
Match: A0A7S4J9C2_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J9C2_9STRA)

HSP 1 Score: 291 bits (745), Expect = 3.170e-92
Identity = 142/237 (59.92%), Postives = 188/237 (79.32%), Query Frame = 2 
Query:  533 LAKPLDFDMASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSMFRRVITGQNMFVTDYVNRGD--ASGKVGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTKMM-AGFFGGEGFVLQRLTGKGDAFVKASGPLIQRELREGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGG 1234
            +A P+DFD++SKVEG+ESQ+VT  ++PGQ++RAE+G +++M  G+ M+T TGGG S+ F+R++TGQN+F++DY   G+   +G V LGTD PSKI+RL +  YGG+++ Q+GA L  +HTIDI+ EF K   AGFFGGEGFVLQ LTG GD F+KA G LI+REL  GE LR+SSG +VAFS  V +D+QT+PGFKNV+FGGEGLF+T LTGPGTV+LQG P  RM+ +IARR+P G
Sbjct:  102 VAVPIDFDVSSKVEGKESQIVTVAIKPGQILRAESGAMMYMTQGVSMNTTTGGGLSAGFKRMLTGQNVFISDYSYEGEPGTTGLVALGTDFPSKIIRLNVDQYGGKIVAQKGALLCATHTIDIEMEFAKKFSAGFFGGEGFVLQALTGDGDVFLKAGGTLIRRELSAGEQLRISSGCLVAFSDGVDFDIQTMPGFKNVMFGGEGLFVTTLTGPGTVWLQGQPPQRMISEIARRVPSG 338
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig95.17498.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1U0_ECTSI1.790e-14999.12Altered inheritance of mitochondria protein 24, mi... [more]
A0A7S2WLF3_9STRA6.350e-9761.04Altered inheritance of mitochondria protein 24, mi... [more]
A0A4D9D418_9STRA3.310e-9661.57Altered inheritance of mitochondria protein 24, mi... [more]
W7T4F9_9STRA1.280e-9561.57Altered inheritance of mitochondria protein 24, mi... [more]
A0A1Z5KFL0_FISSO6.750e-9557.77Altered inheritance of mitochondria protein 24, mi... [more]
A0A7S4QQY9_9STRA1.500e-9460.25Altered inheritance of mitochondria protein 24, mi... [more]
A0A7S0C9P2_9STRA4.910e-9459.76Altered inheritance of mitochondria protein 24, mi... [more]
A0A7S2GIV3_9STRA9.030e-9460.48Altered inheritance of mitochondria protein 24, mi... [more]
A0A7S1VUA2_9STRA3.610e-9360.08Altered inheritance of mitochondria protein 24, mi... [more]
A0A7S4J9C2_9STRA3.170e-9259.92Altered inheritance of mitochondria protein 24, mi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig95contigE-siliculosus-1a_M_contig95:296386..301354 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size999
Model size1237
Exons6
Ec32 orthologEc-07_004160.1
Ec32 ortholog descriptionTryptophan RNA-binding attenuator protein-like domain
Hectar predicted targeting categorymitochondrion
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGs2QVFQ@2759,COG2013@1
EggNOG free text desc.Mitochondrial biogenesis AIM24
Seed eggNOG ortholog2880.D7G1U0
Seed ortholog evalue3.7e-121
Seed ortholog score441.4
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig95.17498.1prot_E-siliculosus-1a_M_contig95.17498.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig95 296386..301116 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936516.319154-CDS-E-siliculosus-1a_M_contig95:296385..2964641622936516.319154-CDS-E-siliculosus-1a_M_contig95:296385..296464Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 296386..296464 -
1696251113.076607-CDS-E-siliculosus-1a_M_contig95:296385..2964641696251113.076607-CDS-E-siliculosus-1a_M_contig95:296385..296464Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 296386..296464 -
1622936516.3645387-CDS-E-siliculosus-1a_M_contig95:297406..2975711622936516.3645387-CDS-E-siliculosus-1a_M_contig95:297406..297571Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 297407..297571 -
1696251113.0887127-CDS-E-siliculosus-1a_M_contig95:297406..2975711696251113.0887127-CDS-E-siliculosus-1a_M_contig95:297406..297571Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 297407..297571 -
1622936516.3802862-CDS-E-siliculosus-1a_M_contig95:298239..2983341622936516.3802862-CDS-E-siliculosus-1a_M_contig95:298239..298334Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 298240..298334 -
1696251113.0970244-CDS-E-siliculosus-1a_M_contig95:298239..2983341696251113.0970244-CDS-E-siliculosus-1a_M_contig95:298239..298334Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 298240..298334 -
1622936516.3959146-CDS-E-siliculosus-1a_M_contig95:299239..2994231622936516.3959146-CDS-E-siliculosus-1a_M_contig95:299239..299423Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 299240..299423 -
1696251113.1054847-CDS-E-siliculosus-1a_M_contig95:299239..2994231696251113.1054847-CDS-E-siliculosus-1a_M_contig95:299239..299423Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 299240..299423 -
1622936516.4125948-CDS-E-siliculosus-1a_M_contig95:299901..2999871622936516.4125948-CDS-E-siliculosus-1a_M_contig95:299901..299987Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 299902..299987 -
1696251113.1151161-CDS-E-siliculosus-1a_M_contig95:299901..2999871696251113.1151161-CDS-E-siliculosus-1a_M_contig95:299901..299987Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 299902..299987 -
1622936516.4283943-CDS-E-siliculosus-1a_M_contig95:300726..3011161622936516.4283943-CDS-E-siliculosus-1a_M_contig95:300726..301116Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 300727..301116 -
1696251113.125379-CDS-E-siliculosus-1a_M_contig95:300726..3011161696251113.125379-CDS-E-siliculosus-1a_M_contig95:300726..301116Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 300727..301116 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936516.4462893-UTR-E-siliculosus-1a_M_contig95:301116..3013541622936516.4462893-UTR-E-siliculosus-1a_M_contig95:301116..301354Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 301117..301354 -
1696251113.1358464-UTR-E-siliculosus-1a_M_contig95:301116..3013541696251113.1358464-UTR-E-siliculosus-1a_M_contig95:301116..301354Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 301117..301354 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig95.17498.1

>prot_E-siliculosus-1a_M_contig95.17498.1 ID=prot_E-siliculosus-1a_M_contig95.17498.1|Name=mRNA_E-siliculosus-1a_M_contig95.17498.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=333bp
MTCRGLAMSARRLAVLRRGNGSTAVLAVGGSVAPPAANLPAFSAIASGER
ATTTAVFSRKSSSSSSSSRSIRRTSDGAAATATGVSDAPAATEQDHLALA
KPLDFDMASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTG
GGASSMFRRVITGQNMFVTDYVNRGDASGKVGLGTDVPSKIVRLPLAAYG
GEVICQRGAFLAGSHTIDIQTEFTKMMAGFFGGEGFVLQRLTGKGDAFVK
ASGPLIQRELREGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGL
FITKLTGPGTVFLQGLPFDRMVDQIARRIPGGR
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mRNA from alignment at E-siliculosus-1a_M_contig95:296386..301354-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig95.17498.1 ID=mRNA_E-siliculosus-1a_M_contig95.17498.1|Name=mRNA_E-siliculosus-1a_M_contig95.17498.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=4969bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:296386..301354- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GGGCTGAGAGTCTTTGCTAGATTTTGGCATTTAGCAACCGACATACGGTT
TAATGTGAAGACAACAACAACAACAACAACCCAAGATCCCTGGGAAACCG
GATGGAACTCCTTTTTTTGTCGTCCGTCCGCAGCCATTCCCAACTTTCTA
GAAGCAAAGAAGGAGCACACACAAGGCTGGCTGCCTGCTGCCTGCACACA
CGCAGCCACCACGAAACCAGAAGAGGCTGAAGACACAGATGACTTGCCGC
GGGTTAGCAATGTCGGCCAGGAGGCTGGCGGTCTTGCGCAGGGGCAATGG
TTCCACGGCAGTTTTGGCGGTTGGCGGTTCCGTTGCTCCGCCAGCAGCAA
ATCTCCCCGCTTTTTCGGCGATTGCGTCCGGCGAACGGGCCACCACGACC
GCCGTCTTCTCCAGAAAGAGCAGCAGCAGCAGCAGCAGCAGCAGAAGTAT
CCGCAGGACCAGCGATGGTGCTGCGGCCACGGCGACAGGCGTCTCCGATG
CCCCAGCCGCCACGGAGCAAGACCACCTTGCTCTCGCGAAGCCCCTTGAT
TTCGACATGGCGTCCAAGGTCGAAGGGCAGGAATCGCAGATGGTTACGTT
TGAGCTGGAGCCCGGCCAAGTCATAAGGGTGAGTGAGTTGAACGATGCCT
GGGTATCTCAGGGCTGTGGAGTACGAAGCTGATTGATCGTTGGTGTCATT
GTTATTTCTTGCGGGAGTTGGCTCGGATGCACGCGCCTCTGGTCCTAATA
CACAAACCAATACAGTCCTATCCCCAAGTATCGTGCCGGAAACATCCTAC
ATATCTCGCGTCATCAGGGGATCGGTGTGTACTTGTTACATGTACACGTG
CACACTCACCTTCGACTCTGTCGCCATATGCTGCGTCTCTGATCATGGAT
ATCAGTCTGCGTATGGATCCGCCTCATATTTCGCCACCGGGCCACACACC
CCACAGGGAAAAATGCTGATGGCCGACTGCGCTGTGATCCAGAGCTCTTG
AGAATTTGGCTGCAACGGTCAAGGTTTTCGGTCTGTTCGCGAACCGCTTA
CCTGCAGAGGGTAGAGCGTAGGTGTTGGATGATAAGGCGGGTGAAACATG
GAACCTTTGCACCATCATCATCCTTGAGATCACGTGATCCTTACTATTCG
TCAGCTAGACCCCATCCATGTCCATATGTGAAAGGCTACGTTTAACGCGA
CAGTTAACAGCAGTAGGCACGACGCGCAACTGAGCGTGTGAAAGTTACGA
CGACACAACGAAGAGCCTGGAACACGCAACCCCGGAACATAAGTATGTTA
GTAATTGGGGTGTGCCAACGTATCTGTTATAACATTGTGTGCCTGGTTTC
ACGCAAACCCTGGTCAGGCCGAAGCGGGCAACCTCGTTTTCATGGAGGAC
GGCATCGAGATGGACACCAACACCGGCGGCGGCGCCAGCAGCATGTTCCG
GAGGTACGTATGATGCGTGGTACGCGAGGGCAGAGTGCAGGAACGGGGGA
ATCTTTGTTGACTCTCGCCAAGCACCAGCGCGCCAGCGCGCGGGCTTCCG
CCGCCGACGCGCCGACGCTTTTCACCCCTCTTGGTCTCTGGCCCCGGAGG
CGTTCGTCCGCTGATGCTTCGTGGGCCACCGCCAGGAGGGGACGGGCTGG
GCGTGGAGAAAAGAAATCTCGCTTGCTGTCACAGGATTTCTATGTCAAGT
TTCCTATCGCAAGAATCTATTGGCAAGTACGTGGGTTCTCATGCGTCGCG
ACCTCGGGGCATCCCCACCGGTTTGACGGCTTCTTTGCAATAGTCGCCGC
GTCGTCGATGGAGAGAGCAAGAACGCCCTATGTATTCAGTGAAAGTCCTC
ACGATGAGCCTTTTGCCGCCCGCCGACCCCTCCTTGCATATATTGTCTGC
GGACTCCTCTCTCTCGCGTGCCGCCGAGAAGGGTAATCACGGGTCAGAAC
ATGTTCGTGACGGACTACGTGAACCGCGGCGACGCTTCCGGCAAGGTCGG
CCTAGGCACGGACGTCCCCAGCAAGATCGTCCGCCTTCCCCTCGCCGCCT
ACGGGGGGGAAGTCATCTGCCAGCGGGGAGCGTTCCTGGCCGGAAGCCAC
ACCATCGACATACAGGTGGATTTTCTACGCCGAGAAGGAAGAAGAGCAAG
GTCAAAGGGGGGGTCCTGTAGTGTAGTACGTACGCATGCATGACCTTTGT
TGCGCCTAGGTTTTTCCCTGTCTGGTTTACCCCCGATGCTGTATTATAAG
AACGCAGGAAGTTATGAACGCCTTGCCGATGAATGGAGACGTTTACCCCT
CTAGTATTTCCTCGACATTTTGAAAGGGGGCCCGTGTGTGTGTGTGTGTG
TGTGAGAATTGAGTAAGGTATGCACCCCTTCCACGTGGTTTCGCCAGCCG
GGGCTCTCAGGTTTTGCCGCGGTTCCTTGATTGTGTGTACAACTCTTGCT
TGCCTTCGAACATGTCCTTGGGGTGTCCTGTGATGGCCCCTCATAACCCA
ATGGCTTCCCGTTGCATACACGCCGGGCCGCTGCTGTGCTTACCTGAACT
GAGGCCGCGGGGCCGCCACGGAGTGTTGAGTGATTTGCTGCCGAGTGTTG
GTGTGATGTTGCTCCAGGTGTTGTCGGCGTTGTGGCCCTTGCTGCGGGAA
GCGCGCCTGTTTAGTCTGGCGACAGGAACCATTCTCCAGAAGCGCGTTTT
CCCCTCCTCGCAGTCTTTGTTGGGCATGTTTCGACGATCGACTACACATC
GCGATCGTGTTTTTTTGCCAGATAGCCTCTGGGATTACTTCACACATGCT
AACGCCGGCATGCTTACCCCATACGCGGGAAAGGCATGGTTCTGCACCTT
ATTTGCTCGCTCTCTCAAGTCGCTTTCCTGACATCCCTTGTTCCTTTGCG
TACCGGTCCGCTCTCTCATTCAGCTTGACTTGTCTTGGTATGTAGTGCCT
TTTCGTGACCTGACTTTGCTCGCGTGTCCATCGCCAACTTCGTCTTCCCT
TCTTTTCCGGTGCCTTGCAGACGGAGTTTACAAAGATGATGGCGGGCTTC
TTCGGCGGAGAAGGTTTCGTCCTCCAGCGACTTACCGGAAAGGGCGATGC
CTTCGTCAAGGCTAGGTACGGCACGGTACGGTACGGTACGGTACGGTACG
GTACGGTACGGTACGGTACGGTACGGTAGGGAAAGGCGCGCGGGTGTATT
GGTTACGGTCCCGTGTCGCTCGCAAAGTGATGGTCCCTGTCGCTTACAAG
CACGAGCGTGTTCTGTTTAGTAGCGTAGCGATCGCAGCGGTGCCGGTGGA
AGAATAATTTGGAGAGGCCTCTTTGCTCGTTTTGTAAGCGATCGTGGGAG
AATATTGGCGGCACGAAGTGATTATACAGCGACGCGTCGTCTAGGGTTTA
ACTGGTTCCGACAGCAGTGACAGTGATCTCCGGGGACGGAACCGTCGTCA
TGCTGATGGTGCTTCTACAAGTGATCCGGCTGGGATTCGAACCCATGCGT
GTATCTTTGTGCTACGAACGATTATTGTATCCACTACGCTAACAGAGCAT
TCGAATGAACGTGCTCTCTCTTTCAACACCATTATTTAGAGTGTATTCGG
GGAAGCGTGGCTGTTGGCCGTTACAGCTGCCCCTCGGTCGTCGGTACAGC
ACGCCACGCCAACGGACAAACGCCTCTTCGATCGCCTTGTTACCCCGCCA
TGTCTTTCGCAAAATCGCAACAAAGATACGATAGAAAGCGCACCAACCGC
CGAGATTGTGTGTTTTTCCCTCCTCTTTGGCAGTGGTCCGCTGATCCAGC
GGGAGCTCCGAGAAGGGGAGACCCTGAGAGTTAGCTCGGGCAGCGTCGTC
GCGTTCTCGACGTCGGTGCAGTACGACGTGCAGACGATTCCCGGCTTCAA
GAACGTGGTCTTCGGGGGGGAGGGGCTGTTCATCACCAAGCTCACGGGGT
AAGGAAGCTAAACAGCACGGCAGGGACGAGGAGATAATGAATGCTGCGCA
CCTGCTGTTGTACAGGCGGTACGTAGCCCTTGTTTTCTTTCTTTGTGCGG
CAGTGGGCGCCGACAAATGTGCGACGTGCTACTGCTGTGGCGGGCAGCAG
CGGCCCCGTCCCCCGGTCGTTGCTGTCTGCACGTCCTGATTCTTTGTACG
TGCGTGCGCCGGCGTATATCAAGAGAGGAAAAAGTGAGACTGCATCAAAC
CGTTTGGTGCTTTCGGCCGGGCTTTCCGGCGAGACTATTAAGTAGGAGCC
AATACTTCGTTCTAACACGTTCTGGACGAGGTTCGTTGTCCTCGCGCAGA
GCACATGAATACATGACATCGTACACGACTGTCGCCTTCTCCGGCGGGGG
GCTGTTCGCCAAGCTTTTGGCGGTAGACCCCAGGGGCAGGAGCAGTCCTG
GCGTGTTGTTGCTATTTTGTATGCCGGTTAGAACCGTACGTGTGTTTCAG
GTTCTGGGTACGGTGGGGAAAGTAGGCTTCAAAGCCCGCCCGTCTACCTC
GCTTTTTTTCTTTCGTTGCTGGGAGCTTTTTTCTTCATTGCTGGGAGCTC
TTTTCTTTCATTGCTGGGAGATCTCTCTCTGAATTTGTGGTGATGGTGAG
ATCGAGCTGGACAAGGGCATGTGCTTGATTGAAAACTGTCTTTCGTTGGG
TTTCGGGGTGACCGAAGCAGATTCGCATCCCCTCTTCTCGCCGCGCCCGC
CTGCAGTGGCGGATAGAAATCCCCAGGCCTGATTTCCCCCATCAACCCAC
AGTATTATGCGCCATGCAGTAGAAGGGTTGCTTGTTGCTCTAGAGTATCC
GTGCCAAGTGCTGCCATTACCCCCGCCCATAGCCGCAACCATTTCTGATC
GAATCATGCCGCTGCGCCCCCTCCGCCTGCTGTGTTGAAGGCCTGGCACC
GTGTTCCTTCAGGGTCTGCCGTTCGACCGAATGGTGGACCAAATAGCACG
GCGGATTCCTGGCGGTCGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:296386..301354-

>mRNA_E-siliculosus-1a_M_contig95.17498.1 ID=mRNA_E-siliculosus-1a_M_contig95.17498.1|Name=mRNA_E-siliculosus-1a_M_contig95.17498.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1998bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:296386..301354- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGACTTGCCGCGGGTTAGCAATGTCGGCCAGGAGGCTGGCGGTCTTGCG
CAGGGGCAATGGTTCCACGGCAGTTTTGGCGGTTGGCGGTTCCGTTGCTC
CGCCAGCAGCAAATCTCCCCGCTTTTTCGGCGATTGCGTCCGGCGAACGG
GCCACCACGACCGCCGTCTTCTCCAGAAAGAGCAGCAGCAGCAGCAGCAG
CAGCAGAAGTATCCGCAGGACCAGCGATGGTGCTGCGGCCACGGCGACAG
GCGTCTCCGATGCCCCAGCCGCCACGGAGCAAGACCACCTTGCTCTCGCG
AAGCCCCTTGATTTCGACATGGCGTCCAAGGTCGAAGGGCAGGAATCGCA
GATGGTTACGTTTGAGCTGGAGCCCGGCCAAGTCATAAGGATGACTTGCC
GCGGGTTAGCAATGTCGGCCAGGAGGCTGGCGGTCTTGCGCAGGGGCAAT
GGTTCCACGGCAGTTTTGGCGGTTGGCGGTTCCGTTGCTCCGCCAGCAGC
AAATCTCCCCGCTTTTTCGGCGATTGCGTCCGGCGAACGGGCCACCACGA
CCGCCGTCTTCTCCAGAAAGAGCAGCAGCAGCAGCAGCAGCAGCAGAAGT
ATCCGCAGGACCAGCGATGGTGCTGCGGCCACGGCGACAGGCGTCTCCGA
TGCCCCAGCCGCCACGGAGCAAGACCACCTTGCTCTCGCGAAGCCCCTTG
ATTTCGACATGGCGTCCAAGGTCGAAGGGCAGGAATCGCAGATGGTTACG
TTTGAGCTGGAGCCCGGCCAAGTCATAAGGGCCGAAGCGGGCAACCTCGT
TTTCATGGAGGACGGCATCGAGATGGACACCAACACCGGCGGCGGCGCCA
GCAGCATGTTCCGGAGGCCGAAGCGGGCAACCTCGTTTTCATGGAGGACG
GCATCGAGATGGACACCAACACCGGCGGCGGCGCCAGCAGCATGTTCCGG
AGGGTAATCACGGGTCAGAACATGTTCGTGACGGACTACGTGAACCGCGG
CGACGCTTCCGGCAAGGTCGGCCTAGGCACGGACGTCCCCAGCAAGATCG
TCCGCCTTCCCCTCGCCGCCTACGGGGGGGAAGTCATCTGCCAGCGGGGA
GCGTTCCTGGCCGGAAGCCACACCATCGACATACAGGGTAATCACGGGTC
AGAACATGTTCGTGACGGACTACGTGAACCGCGGCGACGCTTCCGGCAAG
GTCGGCCTAGGCACGGACGTCCCCAGCAAGATCGTCCGCCTTCCCCTCGC
CGCCTACGGGGGGGAAGTCATCTGCCAGCGGGGAGCGTTCCTGGCCGGAA
GCCACACCATCGACATACAGACGGAGTTTACAAAGATGATGGCGGGCTTC
TTCGGCGGAGAAGGTTTCGTCCTCCAGCGACTTACCGGAAAGGGCGATGC
CTTCGTCAAGGCTAGACGGAGTTTACAAAGATGATGGCGGGCTTCTTCGG
CGGAGAAGGTTTCGTCCTCCAGCGACTTACCGGAAAGGGCGATGCCTTCG
TCAAGGCTAGTGGTCCGCTGATCCAGCGGGAGCTCCGAGAAGGGGAGACC
CTGAGAGTTAGCTCGGGCAGCGTCGTCGCGTTCTCGACGTCGGTGCAGTA
CGACGTGCAGACGATTCCCGGCTTCAAGAACGTGGTCTTCGGGGGGGAGG
GGCTGTTCATCACCAAGCTCACGGGTGGTCCGCTGATCCAGCGGGAGCTC
CGAGAAGGGGAGACCCTGAGAGTTAGCTCGGGCAGCGTCGTCGCGTTCTC
GACGTCGGTGCAGTACGACGTGCAGACGATTCCCGGCTTCAAGAACGTGG
TCTTCGGGGGGGAGGGGCTGTTCATCACCAAGCTCACGGGGCCTGGCACC
GTGTTCCTTCAGGGTCTGCCGTTCGACCGAATGGTGGACCAAATAGCACG
GCGGATTCCTGGCGGTCGCGCCTGGCACCGTGTTCCTTCAGGGTCTGCCG
TTCGACCGAATGGTGGACCAAATAGCACGGCGGATTCCTGGCGGTCGC
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